data_4Q5K # _entry.id 4Q5K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4Q5K pdb_00004q5k 10.2210/pdb4q5k/pdb RCSB RCSB085631 ? ? WWPDB D_1000085631 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-05-21 2 'Structure model' 1 1 2014-12-24 3 'Structure model' 1 2 2017-11-22 4 'Structure model' 1 3 2019-09-18 5 'Structure model' 1 4 2023-02-01 6 'Structure model' 1 5 2023-09-20 7 'Structure model' 1 6 2023-12-06 8 'Structure model' 1 7 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 6 'Structure model' 'Data collection' 9 6 'Structure model' 'Refinement description' 10 7 'Structure model' 'Data collection' 11 8 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' citation 3 4 'Structure model' citation_author 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_struct_conn_angle 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_ref_seq_dif 9 5 'Structure model' struct_site 10 6 'Structure model' chem_comp_atom 11 6 'Structure model' chem_comp_bond 12 6 'Structure model' pdbx_initial_refinement_model 13 7 'Structure model' chem_comp_atom 14 7 'Structure model' chem_comp_bond 15 8 'Structure model' pdbx_entry_details 16 8 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_citation.country' 4 4 'Structure model' '_citation.journal_abbrev' 5 4 'Structure model' '_citation.journal_id_ASTM' 6 4 'Structure model' '_citation.journal_id_CSD' 7 4 'Structure model' '_citation.journal_id_ISSN' 8 4 'Structure model' '_citation.journal_volume' 9 4 'Structure model' '_citation.page_first' 10 4 'Structure model' '_citation.page_last' 11 4 'Structure model' '_citation.pdbx_database_id_DOI' 12 4 'Structure model' '_citation.pdbx_database_id_PubMed' 13 4 'Structure model' '_citation.title' 14 4 'Structure model' '_citation.year' 15 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 16 5 'Structure model' '_database_2.pdbx_DOI' 17 5 'Structure model' '_database_2.pdbx_database_accession' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 26 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 27 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 28 5 'Structure model' '_pdbx_struct_conn_angle.value' 29 5 'Structure model' '_struct_conn.pdbx_dist_value' 30 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 31 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 32 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 33 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 34 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 35 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 36 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 37 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 38 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 39 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 40 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 41 5 'Structure model' '_struct_ref_seq_dif.details' 42 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 43 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 44 5 'Structure model' '_struct_site.pdbx_auth_seq_id' 45 7 'Structure model' '_chem_comp_atom.atom_id' 46 7 'Structure model' '_chem_comp_bond.atom_id_2' 47 8 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4Q5K _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-04-17 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-417815 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Structure-guided functional characterization of DUF1460 reveals a highly specific NlpC/P60 amidase family.' _citation.journal_abbrev Structure _citation.journal_volume 22 _citation.page_first 1799 _citation.page_last 1809 _citation.year 2014 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25465128 _citation.pdbx_database_id_DOI 10.1016/j.str.2014.09.018 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xu, Q.' 1 ? primary 'Mengin-Lecreulx, D.' 2 ? primary 'Patin, D.' 3 ? primary 'Grant, J.C.' 4 ? primary 'Chiu, H.J.' 5 ? primary 'Jaroszewski, L.' 6 ? primary 'Knuth, M.W.' 7 ? primary 'Godzik, A.' 8 ? primary 'Lesley, S.A.' 9 ? primary 'Elsliger, M.A.' 10 ? primary 'Deacon, A.M.' 11 ? primary 'Wilson, I.A.' 12 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 26898.617 1 ? ? 'UNP residues 24-262' ? 2 non-polymer syn ;(2R)-2-[[(1R,2S,3R,4R,5R)-4-acetamido-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-6,8-dioxabicyclo[3.2.1]octan-3-yl]oxy]propanoic acid ; 478.448 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 water nat water 18.015 455 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GQGGKD(MSE)LSNGIKYLDVPYVAHTLEADGPEELVINCDEVDCTTLVEYVLAETLTPKLADGDISESAFADNLQKIRY RDGKIDGYTSRLHYIADWINNGVRNGFLQDVTGA(MSE)SPDTERLSISY(MSE)SSHPQLYKQLANSPENVAK(MSE)K KIEQSLSGKEVHYLPKAKLPADGLPWIKDGDIIAITTNTPGLDVAH(MSE)GIAFYADNKLLLVHASSTDKKVVVSKVPL SQ(MSE)LKDNNKWTGIRVLR(MSE)KK ; _entity_poly.pdbx_seq_one_letter_code_can ;GQGGKDMLSNGIKYLDVPYVAHTLEADGPEELVINCDEVDCTTLVEYVLAETLTPKLADGDISESAFADNLQKIRYRDGK IDGYTSRLHYIADWINNGVRNGFLQDVTGAMSPDTERLSISYMSSHPQLYKQLANSPENVAKMKKIEQSLSGKEVHYLPK AKLPADGLPWIKDGDIIAITTNTPGLDVAHMGIAFYADNKLLLVHASSTDKKVVVSKVPLSQMLKDNNKWTGIRVLRMKK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-417815 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(2R)-2-[[(1R,2S,3R,4R,5R)-4-acetamido-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-6,8-dioxabicyclo[3.2.1]octan-3-yl]oxy]propanoic acid ; 2YP 3 'SODIUM ION' NA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 GLY n 1 4 GLY n 1 5 LYS n 1 6 ASP n 1 7 MSE n 1 8 LEU n 1 9 SER n 1 10 ASN n 1 11 GLY n 1 12 ILE n 1 13 LYS n 1 14 TYR n 1 15 LEU n 1 16 ASP n 1 17 VAL n 1 18 PRO n 1 19 TYR n 1 20 VAL n 1 21 ALA n 1 22 HIS n 1 23 THR n 1 24 LEU n 1 25 GLU n 1 26 ALA n 1 27 ASP n 1 28 GLY n 1 29 PRO n 1 30 GLU n 1 31 GLU n 1 32 LEU n 1 33 VAL n 1 34 ILE n 1 35 ASN n 1 36 CYS n 1 37 ASP n 1 38 GLU n 1 39 VAL n 1 40 ASP n 1 41 CYS n 1 42 THR n 1 43 THR n 1 44 LEU n 1 45 VAL n 1 46 GLU n 1 47 TYR n 1 48 VAL n 1 49 LEU n 1 50 ALA n 1 51 GLU n 1 52 THR n 1 53 LEU n 1 54 THR n 1 55 PRO n 1 56 LYS n 1 57 LEU n 1 58 ALA n 1 59 ASP n 1 60 GLY n 1 61 ASP n 1 62 ILE n 1 63 SER n 1 64 GLU n 1 65 SER n 1 66 ALA n 1 67 PHE n 1 68 ALA n 1 69 ASP n 1 70 ASN n 1 71 LEU n 1 72 GLN n 1 73 LYS n 1 74 ILE n 1 75 ARG n 1 76 TYR n 1 77 ARG n 1 78 ASP n 1 79 GLY n 1 80 LYS n 1 81 ILE n 1 82 ASP n 1 83 GLY n 1 84 TYR n 1 85 THR n 1 86 SER n 1 87 ARG n 1 88 LEU n 1 89 HIS n 1 90 TYR n 1 91 ILE n 1 92 ALA n 1 93 ASP n 1 94 TRP n 1 95 ILE n 1 96 ASN n 1 97 ASN n 1 98 GLY n 1 99 VAL n 1 100 ARG n 1 101 ASN n 1 102 GLY n 1 103 PHE n 1 104 LEU n 1 105 GLN n 1 106 ASP n 1 107 VAL n 1 108 THR n 1 109 GLY n 1 110 ALA n 1 111 MSE n 1 112 SER n 1 113 PRO n 1 114 ASP n 1 115 THR n 1 116 GLU n 1 117 ARG n 1 118 LEU n 1 119 SER n 1 120 ILE n 1 121 SER n 1 122 TYR n 1 123 MSE n 1 124 SER n 1 125 SER n 1 126 HIS n 1 127 PRO n 1 128 GLN n 1 129 LEU n 1 130 TYR n 1 131 LYS n 1 132 GLN n 1 133 LEU n 1 134 ALA n 1 135 ASN n 1 136 SER n 1 137 PRO n 1 138 GLU n 1 139 ASN n 1 140 VAL n 1 141 ALA n 1 142 LYS n 1 143 MSE n 1 144 LYS n 1 145 LYS n 1 146 ILE n 1 147 GLU n 1 148 GLN n 1 149 SER n 1 150 LEU n 1 151 SER n 1 152 GLY n 1 153 LYS n 1 154 GLU n 1 155 VAL n 1 156 HIS n 1 157 TYR n 1 158 LEU n 1 159 PRO n 1 160 LYS n 1 161 ALA n 1 162 LYS n 1 163 LEU n 1 164 PRO n 1 165 ALA n 1 166 ASP n 1 167 GLY n 1 168 LEU n 1 169 PRO n 1 170 TRP n 1 171 ILE n 1 172 LYS n 1 173 ASP n 1 174 GLY n 1 175 ASP n 1 176 ILE n 1 177 ILE n 1 178 ALA n 1 179 ILE n 1 180 THR n 1 181 THR n 1 182 ASN n 1 183 THR n 1 184 PRO n 1 185 GLY n 1 186 LEU n 1 187 ASP n 1 188 VAL n 1 189 ALA n 1 190 HIS n 1 191 MSE n 1 192 GLY n 1 193 ILE n 1 194 ALA n 1 195 PHE n 1 196 TYR n 1 197 ALA n 1 198 ASP n 1 199 ASN n 1 200 LYS n 1 201 LEU n 1 202 LEU n 1 203 LEU n 1 204 VAL n 1 205 HIS n 1 206 ALA n 1 207 SER n 1 208 SER n 1 209 THR n 1 210 ASP n 1 211 LYS n 1 212 LYS n 1 213 VAL n 1 214 VAL n 1 215 VAL n 1 216 SER n 1 217 LYS n 1 218 VAL n 1 219 PRO n 1 220 LEU n 1 221 SER n 1 222 GLN n 1 223 MSE n 1 224 LEU n 1 225 LYS n 1 226 ASP n 1 227 ASN n 1 228 ASN n 1 229 LYS n 1 230 TRP n 1 231 THR n 1 232 GLY n 1 233 ILE n 1 234 ARG n 1 235 VAL n 1 236 LEU n 1 237 ARG n 1 238 MSE n 1 239 LYS n 1 240 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BACUNI_02947 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides uniformis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 411479 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 8492 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2YP non-polymer . ;(2R)-2-[[(1R,2S,3R,4R,5R)-4-acetamido-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-6,8-dioxabicyclo[3.2.1]octan-3-yl]oxy]propanoic acid ; ? 'C19 H30 N2 O12' 478.448 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLN 2 24 ? ? ? A . n A 1 3 GLY 3 25 ? ? ? A . n A 1 4 GLY 4 26 26 GLY GLY A . n A 1 5 LYS 5 27 27 LYS LYS A . n A 1 6 ASP 6 28 28 ASP ASP A . n A 1 7 MSE 7 29 29 MSE MSE A . n A 1 8 LEU 8 30 30 LEU LEU A . n A 1 9 SER 9 31 31 SER SER A . n A 1 10 ASN 10 32 32 ASN ASN A . n A 1 11 GLY 11 33 33 GLY GLY A . n A 1 12 ILE 12 34 34 ILE ILE A . n A 1 13 LYS 13 35 35 LYS LYS A . n A 1 14 TYR 14 36 36 TYR TYR A . n A 1 15 LEU 15 37 37 LEU LEU A . n A 1 16 ASP 16 38 38 ASP ASP A . n A 1 17 VAL 17 39 39 VAL VAL A . n A 1 18 PRO 18 40 40 PRO PRO A . n A 1 19 TYR 19 41 41 TYR TYR A . n A 1 20 VAL 20 42 42 VAL VAL A . n A 1 21 ALA 21 43 43 ALA ALA A . n A 1 22 HIS 22 44 44 HIS HIS A . n A 1 23 THR 23 45 45 THR THR A . n A 1 24 LEU 24 46 46 LEU LEU A . n A 1 25 GLU 25 47 47 GLU GLU A . n A 1 26 ALA 26 48 48 ALA ALA A . n A 1 27 ASP 27 49 49 ASP ASP A . n A 1 28 GLY 28 50 50 GLY GLY A . n A 1 29 PRO 29 51 51 PRO PRO A . n A 1 30 GLU 30 52 52 GLU GLU A . n A 1 31 GLU 31 53 53 GLU GLU A . n A 1 32 LEU 32 54 54 LEU LEU A . n A 1 33 VAL 33 55 55 VAL VAL A . n A 1 34 ILE 34 56 56 ILE ILE A . n A 1 35 ASN 35 57 57 ASN ASN A . n A 1 36 CYS 36 58 58 CYS CYS A . n A 1 37 ASP 37 59 59 ASP ASP A . n A 1 38 GLU 38 60 60 GLU GLU A . n A 1 39 VAL 39 61 61 VAL VAL A . n A 1 40 ASP 40 62 62 ASP ASP A . n A 1 41 CYS 41 63 63 CYS CYS A . n A 1 42 THR 42 64 64 THR THR A . n A 1 43 THR 43 65 65 THR THR A . n A 1 44 LEU 44 66 66 LEU LEU A . n A 1 45 VAL 45 67 67 VAL VAL A . n A 1 46 GLU 46 68 68 GLU GLU A . n A 1 47 TYR 47 69 69 TYR TYR A . n A 1 48 VAL 48 70 70 VAL VAL A . n A 1 49 LEU 49 71 71 LEU LEU A . n A 1 50 ALA 50 72 72 ALA ALA A . n A 1 51 GLU 51 73 73 GLU GLU A . n A 1 52 THR 52 74 74 THR THR A . n A 1 53 LEU 53 75 75 LEU LEU A . n A 1 54 THR 54 76 76 THR THR A . n A 1 55 PRO 55 77 77 PRO PRO A . n A 1 56 LYS 56 78 78 LYS LYS A . n A 1 57 LEU 57 79 79 LEU LEU A . n A 1 58 ALA 58 80 80 ALA ALA A . n A 1 59 ASP 59 81 81 ASP ASP A . n A 1 60 GLY 60 82 82 GLY GLY A . n A 1 61 ASP 61 83 83 ASP ASP A . n A 1 62 ILE 62 84 84 ILE ILE A . n A 1 63 SER 63 85 85 SER SER A . n A 1 64 GLU 64 86 86 GLU GLU A . n A 1 65 SER 65 87 87 SER SER A . n A 1 66 ALA 66 88 88 ALA ALA A . n A 1 67 PHE 67 89 89 PHE PHE A . n A 1 68 ALA 68 90 90 ALA ALA A . n A 1 69 ASP 69 91 91 ASP ASP A . n A 1 70 ASN 70 92 92 ASN ASN A . n A 1 71 LEU 71 93 93 LEU LEU A . n A 1 72 GLN 72 94 94 GLN GLN A . n A 1 73 LYS 73 95 95 LYS LYS A . n A 1 74 ILE 74 96 96 ILE ILE A . n A 1 75 ARG 75 97 97 ARG ARG A . n A 1 76 TYR 76 98 98 TYR TYR A . n A 1 77 ARG 77 99 99 ARG ARG A . n A 1 78 ASP 78 100 100 ASP ASP A . n A 1 79 GLY 79 101 101 GLY GLY A . n A 1 80 LYS 80 102 102 LYS LYS A . n A 1 81 ILE 81 103 103 ILE ILE A . n A 1 82 ASP 82 104 104 ASP ASP A . n A 1 83 GLY 83 105 105 GLY GLY A . n A 1 84 TYR 84 106 106 TYR TYR A . n A 1 85 THR 85 107 107 THR THR A . n A 1 86 SER 86 108 108 SER SER A . n A 1 87 ARG 87 109 109 ARG ARG A . n A 1 88 LEU 88 110 110 LEU LEU A . n A 1 89 HIS 89 111 111 HIS HIS A . n A 1 90 TYR 90 112 112 TYR TYR A . n A 1 91 ILE 91 113 113 ILE ILE A . n A 1 92 ALA 92 114 114 ALA ALA A . n A 1 93 ASP 93 115 115 ASP ASP A . n A 1 94 TRP 94 116 116 TRP TRP A . n A 1 95 ILE 95 117 117 ILE ILE A . n A 1 96 ASN 96 118 118 ASN ASN A . n A 1 97 ASN 97 119 119 ASN ASN A . n A 1 98 GLY 98 120 120 GLY GLY A . n A 1 99 VAL 99 121 121 VAL VAL A . n A 1 100 ARG 100 122 122 ARG ARG A . n A 1 101 ASN 101 123 123 ASN ASN A . n A 1 102 GLY 102 124 124 GLY GLY A . n A 1 103 PHE 103 125 125 PHE PHE A . n A 1 104 LEU 104 126 126 LEU LEU A . n A 1 105 GLN 105 127 127 GLN GLN A . n A 1 106 ASP 106 128 128 ASP ASP A . n A 1 107 VAL 107 129 129 VAL VAL A . n A 1 108 THR 108 130 130 THR THR A . n A 1 109 GLY 109 131 131 GLY GLY A . n A 1 110 ALA 110 132 132 ALA ALA A . n A 1 111 MSE 111 133 133 MSE MSE A . n A 1 112 SER 112 134 134 SER SER A . n A 1 113 PRO 113 135 135 PRO PRO A . n A 1 114 ASP 114 136 136 ASP ASP A . n A 1 115 THR 115 137 137 THR THR A . n A 1 116 GLU 116 138 138 GLU GLU A . n A 1 117 ARG 117 139 139 ARG ARG A . n A 1 118 LEU 118 140 140 LEU LEU A . n A 1 119 SER 119 141 141 SER SER A . n A 1 120 ILE 120 142 142 ILE ILE A . n A 1 121 SER 121 143 143 SER SER A . n A 1 122 TYR 122 144 144 TYR TYR A . n A 1 123 MSE 123 145 145 MSE MSE A . n A 1 124 SER 124 146 146 SER SER A . n A 1 125 SER 125 147 147 SER SER A . n A 1 126 HIS 126 148 148 HIS HIS A . n A 1 127 PRO 127 149 149 PRO PRO A . n A 1 128 GLN 128 150 150 GLN GLN A . n A 1 129 LEU 129 151 151 LEU LEU A . n A 1 130 TYR 130 152 152 TYR TYR A . n A 1 131 LYS 131 153 153 LYS LYS A . n A 1 132 GLN 132 154 154 GLN GLN A . n A 1 133 LEU 133 155 155 LEU LEU A . n A 1 134 ALA 134 156 156 ALA ALA A . n A 1 135 ASN 135 157 157 ASN ASN A . n A 1 136 SER 136 158 158 SER SER A . n A 1 137 PRO 137 159 159 PRO PRO A . n A 1 138 GLU 138 160 160 GLU GLU A . n A 1 139 ASN 139 161 161 ASN ASN A . n A 1 140 VAL 140 162 162 VAL VAL A . n A 1 141 ALA 141 163 163 ALA ALA A . n A 1 142 LYS 142 164 164 LYS LYS A . n A 1 143 MSE 143 165 165 MSE MSE A . n A 1 144 LYS 144 166 166 LYS LYS A . n A 1 145 LYS 145 167 167 LYS LYS A . n A 1 146 ILE 146 168 168 ILE ILE A . n A 1 147 GLU 147 169 169 GLU GLU A . n A 1 148 GLN 148 170 170 GLN GLN A . n A 1 149 SER 149 171 171 SER SER A . n A 1 150 LEU 150 172 172 LEU LEU A . n A 1 151 SER 151 173 173 SER SER A . n A 1 152 GLY 152 174 174 GLY GLY A . n A 1 153 LYS 153 175 175 LYS LYS A . n A 1 154 GLU 154 176 176 GLU GLU A . n A 1 155 VAL 155 177 177 VAL VAL A . n A 1 156 HIS 156 178 178 HIS HIS A . n A 1 157 TYR 157 179 179 TYR TYR A . n A 1 158 LEU 158 180 180 LEU LEU A . n A 1 159 PRO 159 181 181 PRO PRO A . n A 1 160 LYS 160 182 182 LYS LYS A . n A 1 161 ALA 161 183 183 ALA ALA A . n A 1 162 LYS 162 184 184 LYS LYS A . n A 1 163 LEU 163 185 185 LEU LEU A . n A 1 164 PRO 164 186 186 PRO PRO A . n A 1 165 ALA 165 187 187 ALA ALA A . n A 1 166 ASP 166 188 188 ASP ASP A . n A 1 167 GLY 167 189 189 GLY GLY A . n A 1 168 LEU 168 190 190 LEU LEU A . n A 1 169 PRO 169 191 191 PRO PRO A . n A 1 170 TRP 170 192 192 TRP TRP A . n A 1 171 ILE 171 193 193 ILE ILE A . n A 1 172 LYS 172 194 194 LYS LYS A . n A 1 173 ASP 173 195 195 ASP ASP A . n A 1 174 GLY 174 196 196 GLY GLY A . n A 1 175 ASP 175 197 197 ASP ASP A . n A 1 176 ILE 176 198 198 ILE ILE A . n A 1 177 ILE 177 199 199 ILE ILE A . n A 1 178 ALA 178 200 200 ALA ALA A . n A 1 179 ILE 179 201 201 ILE ILE A . n A 1 180 THR 180 202 202 THR THR A . n A 1 181 THR 181 203 203 THR THR A . n A 1 182 ASN 182 204 204 ASN ASN A . n A 1 183 THR 183 205 205 THR THR A . n A 1 184 PRO 184 206 206 PRO PRO A . n A 1 185 GLY 185 207 207 GLY GLY A . n A 1 186 LEU 186 208 208 LEU LEU A . n A 1 187 ASP 187 209 209 ASP ASP A . n A 1 188 VAL 188 210 210 VAL VAL A . n A 1 189 ALA 189 211 211 ALA ALA A . n A 1 190 HIS 190 212 212 HIS HIS A . n A 1 191 MSE 191 213 213 MSE MSE A . n A 1 192 GLY 192 214 214 GLY GLY A . n A 1 193 ILE 193 215 215 ILE ILE A . n A 1 194 ALA 194 216 216 ALA ALA A . n A 1 195 PHE 195 217 217 PHE PHE A . n A 1 196 TYR 196 218 218 TYR TYR A . n A 1 197 ALA 197 219 219 ALA ALA A . n A 1 198 ASP 198 220 220 ASP ASP A . n A 1 199 ASN 199 221 221 ASN ASN A . n A 1 200 LYS 200 222 222 LYS LYS A . n A 1 201 LEU 201 223 223 LEU LEU A . n A 1 202 LEU 202 224 224 LEU LEU A . n A 1 203 LEU 203 225 225 LEU LEU A . n A 1 204 VAL 204 226 226 VAL VAL A . n A 1 205 HIS 205 227 227 HIS HIS A . n A 1 206 ALA 206 228 228 ALA ALA A . n A 1 207 SER 207 229 229 SER SER A . n A 1 208 SER 208 230 230 SER SER A . n A 1 209 THR 209 231 231 THR THR A . n A 1 210 ASP 210 232 232 ASP ASP A . n A 1 211 LYS 211 233 233 LYS LYS A . n A 1 212 LYS 212 234 234 LYS LYS A . n A 1 213 VAL 213 235 235 VAL VAL A . n A 1 214 VAL 214 236 236 VAL VAL A . n A 1 215 VAL 215 237 237 VAL VAL A . n A 1 216 SER 216 238 238 SER SER A . n A 1 217 LYS 217 239 239 LYS LYS A . n A 1 218 VAL 218 240 240 VAL VAL A . n A 1 219 PRO 219 241 241 PRO PRO A . n A 1 220 LEU 220 242 242 LEU LEU A . n A 1 221 SER 221 243 243 SER SER A . n A 1 222 GLN 222 244 244 GLN GLN A . n A 1 223 MSE 223 245 245 MSE MSE A . n A 1 224 LEU 224 246 246 LEU LEU A . n A 1 225 LYS 225 247 247 LYS LYS A . n A 1 226 ASP 226 248 248 ASP ASP A . n A 1 227 ASN 227 249 249 ASN ASN A . n A 1 228 ASN 228 250 250 ASN ASN A . n A 1 229 LYS 229 251 251 LYS LYS A . n A 1 230 TRP 230 252 252 TRP TRP A . n A 1 231 THR 231 253 253 THR THR A . n A 1 232 GLY 232 254 254 GLY GLY A . n A 1 233 ILE 233 255 255 ILE ILE A . n A 1 234 ARG 234 256 256 ARG ARG A . n A 1 235 VAL 235 257 257 VAL VAL A . n A 1 236 LEU 236 258 258 LEU LEU A . n A 1 237 ARG 237 259 259 ARG ARG A . n A 1 238 MSE 238 260 260 MSE MSE A . n A 1 239 LYS 239 261 261 LYS LYS A . n A 1 240 LYS 240 262 262 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2YP 1 301 263 2YP GML A . C 3 NA 1 302 301 NA NA A . D 4 HOH 1 401 302 HOH HOH A . D 4 HOH 2 402 303 HOH HOH A . D 4 HOH 3 403 304 HOH HOH A . D 4 HOH 4 404 305 HOH HOH A . D 4 HOH 5 405 306 HOH HOH A . D 4 HOH 6 406 307 HOH HOH A . D 4 HOH 7 407 308 HOH HOH A . D 4 HOH 8 408 309 HOH HOH A . D 4 HOH 9 409 310 HOH HOH A . D 4 HOH 10 410 311 HOH HOH A . D 4 HOH 11 411 312 HOH HOH A . D 4 HOH 12 412 313 HOH HOH A . D 4 HOH 13 413 314 HOH HOH A . D 4 HOH 14 414 315 HOH HOH A . D 4 HOH 15 415 316 HOH HOH A . D 4 HOH 16 416 317 HOH HOH A . D 4 HOH 17 417 318 HOH HOH A . D 4 HOH 18 418 319 HOH HOH A . D 4 HOH 19 419 320 HOH HOH A . D 4 HOH 20 420 321 HOH HOH A . D 4 HOH 21 421 322 HOH HOH A . D 4 HOH 22 422 323 HOH HOH A . D 4 HOH 23 423 324 HOH HOH A . D 4 HOH 24 424 325 HOH HOH A . D 4 HOH 25 425 326 HOH HOH A . D 4 HOH 26 426 327 HOH HOH A . D 4 HOH 27 427 328 HOH HOH A . D 4 HOH 28 428 329 HOH HOH A . D 4 HOH 29 429 330 HOH HOH A . D 4 HOH 30 430 331 HOH HOH A . D 4 HOH 31 431 332 HOH HOH A . D 4 HOH 32 432 333 HOH HOH A . D 4 HOH 33 433 334 HOH HOH A . D 4 HOH 34 434 335 HOH HOH A . D 4 HOH 35 435 336 HOH HOH A . D 4 HOH 36 436 337 HOH HOH A . D 4 HOH 37 437 338 HOH HOH A . D 4 HOH 38 438 339 HOH HOH A . D 4 HOH 39 439 340 HOH HOH A . D 4 HOH 40 440 341 HOH HOH A . D 4 HOH 41 441 342 HOH HOH A . D 4 HOH 42 442 343 HOH HOH A . D 4 HOH 43 443 344 HOH HOH A . D 4 HOH 44 444 345 HOH HOH A . D 4 HOH 45 445 346 HOH HOH A . D 4 HOH 46 446 347 HOH HOH A . D 4 HOH 47 447 348 HOH HOH A . D 4 HOH 48 448 349 HOH HOH A . D 4 HOH 49 449 350 HOH HOH A . D 4 HOH 50 450 351 HOH HOH A . D 4 HOH 51 451 352 HOH HOH A . D 4 HOH 52 452 353 HOH HOH A . D 4 HOH 53 453 354 HOH HOH A . D 4 HOH 54 454 355 HOH HOH A . D 4 HOH 55 455 356 HOH HOH A . D 4 HOH 56 456 357 HOH HOH A . D 4 HOH 57 457 358 HOH HOH A . D 4 HOH 58 458 359 HOH HOH A . D 4 HOH 59 459 360 HOH HOH A . D 4 HOH 60 460 361 HOH HOH A . D 4 HOH 61 461 362 HOH HOH A . D 4 HOH 62 462 363 HOH HOH A . D 4 HOH 63 463 364 HOH HOH A . D 4 HOH 64 464 365 HOH HOH A . D 4 HOH 65 465 366 HOH HOH A . D 4 HOH 66 466 367 HOH HOH A . D 4 HOH 67 467 368 HOH HOH A . D 4 HOH 68 468 369 HOH HOH A . D 4 HOH 69 469 370 HOH HOH A . D 4 HOH 70 470 371 HOH HOH A . D 4 HOH 71 471 372 HOH HOH A . D 4 HOH 72 472 373 HOH HOH A . D 4 HOH 73 473 374 HOH HOH A . D 4 HOH 74 474 375 HOH HOH A . D 4 HOH 75 475 376 HOH HOH A . D 4 HOH 76 476 377 HOH HOH A . D 4 HOH 77 477 378 HOH HOH A . D 4 HOH 78 478 379 HOH HOH A . D 4 HOH 79 479 380 HOH HOH A . D 4 HOH 80 480 381 HOH HOH A . D 4 HOH 81 481 382 HOH HOH A . D 4 HOH 82 482 383 HOH HOH A . D 4 HOH 83 483 384 HOH HOH A . D 4 HOH 84 484 385 HOH HOH A . D 4 HOH 85 485 386 HOH HOH A . D 4 HOH 86 486 387 HOH HOH A . D 4 HOH 87 487 388 HOH HOH A . D 4 HOH 88 488 389 HOH HOH A . D 4 HOH 89 489 390 HOH HOH A . D 4 HOH 90 490 391 HOH HOH A . D 4 HOH 91 491 392 HOH HOH A . D 4 HOH 92 492 393 HOH HOH A . D 4 HOH 93 493 394 HOH HOH A . D 4 HOH 94 494 395 HOH HOH A . D 4 HOH 95 495 396 HOH HOH A . D 4 HOH 96 496 397 HOH HOH A . D 4 HOH 97 497 398 HOH HOH A . D 4 HOH 98 498 399 HOH HOH A . D 4 HOH 99 499 400 HOH HOH A . D 4 HOH 100 500 401 HOH HOH A . D 4 HOH 101 501 402 HOH HOH A . D 4 HOH 102 502 403 HOH HOH A . D 4 HOH 103 503 404 HOH HOH A . D 4 HOH 104 504 405 HOH HOH A . D 4 HOH 105 505 406 HOH HOH A . D 4 HOH 106 506 407 HOH HOH A . D 4 HOH 107 507 408 HOH HOH A . D 4 HOH 108 508 409 HOH HOH A . D 4 HOH 109 509 410 HOH HOH A . D 4 HOH 110 510 411 HOH HOH A . D 4 HOH 111 511 412 HOH HOH A . D 4 HOH 112 512 413 HOH HOH A . D 4 HOH 113 513 414 HOH HOH A . D 4 HOH 114 514 415 HOH HOH A . D 4 HOH 115 515 416 HOH HOH A . D 4 HOH 116 516 417 HOH HOH A . D 4 HOH 117 517 418 HOH HOH A . D 4 HOH 118 518 419 HOH HOH A . D 4 HOH 119 519 420 HOH HOH A . D 4 HOH 120 520 421 HOH HOH A . D 4 HOH 121 521 422 HOH HOH A . D 4 HOH 122 522 423 HOH HOH A . D 4 HOH 123 523 424 HOH HOH A . D 4 HOH 124 524 425 HOH HOH A . D 4 HOH 125 525 426 HOH HOH A . D 4 HOH 126 526 427 HOH HOH A . D 4 HOH 127 527 428 HOH HOH A . D 4 HOH 128 528 429 HOH HOH A . D 4 HOH 129 529 430 HOH HOH A . D 4 HOH 130 530 431 HOH HOH A . D 4 HOH 131 531 432 HOH HOH A . D 4 HOH 132 532 433 HOH HOH A . D 4 HOH 133 533 434 HOH HOH A . D 4 HOH 134 534 435 HOH HOH A . D 4 HOH 135 535 436 HOH HOH A . D 4 HOH 136 536 437 HOH HOH A . D 4 HOH 137 537 438 HOH HOH A . D 4 HOH 138 538 439 HOH HOH A . D 4 HOH 139 539 440 HOH HOH A . D 4 HOH 140 540 441 HOH HOH A . D 4 HOH 141 541 442 HOH HOH A . D 4 HOH 142 542 443 HOH HOH A . D 4 HOH 143 543 444 HOH HOH A . D 4 HOH 144 544 445 HOH HOH A . D 4 HOH 145 545 446 HOH HOH A . D 4 HOH 146 546 447 HOH HOH A . D 4 HOH 147 547 448 HOH HOH A . D 4 HOH 148 548 449 HOH HOH A . D 4 HOH 149 549 450 HOH HOH A . D 4 HOH 150 550 451 HOH HOH A . D 4 HOH 151 551 452 HOH HOH A . D 4 HOH 152 552 453 HOH HOH A . D 4 HOH 153 553 454 HOH HOH A . D 4 HOH 154 554 455 HOH HOH A . D 4 HOH 155 555 456 HOH HOH A . D 4 HOH 156 556 457 HOH HOH A . D 4 HOH 157 557 458 HOH HOH A . D 4 HOH 158 558 459 HOH HOH A . D 4 HOH 159 559 460 HOH HOH A . D 4 HOH 160 560 461 HOH HOH A . D 4 HOH 161 561 462 HOH HOH A . D 4 HOH 162 562 463 HOH HOH A . D 4 HOH 163 563 464 HOH HOH A . D 4 HOH 164 564 465 HOH HOH A . D 4 HOH 165 565 466 HOH HOH A . D 4 HOH 166 566 467 HOH HOH A . D 4 HOH 167 567 468 HOH HOH A . D 4 HOH 168 568 469 HOH HOH A . D 4 HOH 169 569 470 HOH HOH A . D 4 HOH 170 570 471 HOH HOH A . D 4 HOH 171 571 472 HOH HOH A . D 4 HOH 172 572 473 HOH HOH A . D 4 HOH 173 573 474 HOH HOH A . D 4 HOH 174 574 475 HOH HOH A . D 4 HOH 175 575 476 HOH HOH A . D 4 HOH 176 576 477 HOH HOH A . D 4 HOH 177 577 478 HOH HOH A . D 4 HOH 178 578 479 HOH HOH A . D 4 HOH 179 579 480 HOH HOH A . D 4 HOH 180 580 481 HOH HOH A . D 4 HOH 181 581 482 HOH HOH A . D 4 HOH 182 582 483 HOH HOH A . D 4 HOH 183 583 484 HOH HOH A . D 4 HOH 184 584 485 HOH HOH A . D 4 HOH 185 585 486 HOH HOH A . D 4 HOH 186 586 487 HOH HOH A . D 4 HOH 187 587 488 HOH HOH A . D 4 HOH 188 588 489 HOH HOH A . D 4 HOH 189 589 490 HOH HOH A . D 4 HOH 190 590 491 HOH HOH A . D 4 HOH 191 591 492 HOH HOH A . D 4 HOH 192 592 493 HOH HOH A . D 4 HOH 193 593 494 HOH HOH A . D 4 HOH 194 594 495 HOH HOH A . D 4 HOH 195 595 496 HOH HOH A . D 4 HOH 196 596 497 HOH HOH A . D 4 HOH 197 597 498 HOH HOH A . D 4 HOH 198 598 499 HOH HOH A . D 4 HOH 199 599 500 HOH HOH A . D 4 HOH 200 600 501 HOH HOH A . D 4 HOH 201 601 502 HOH HOH A . D 4 HOH 202 602 503 HOH HOH A . D 4 HOH 203 603 504 HOH HOH A . D 4 HOH 204 604 505 HOH HOH A . D 4 HOH 205 605 506 HOH HOH A . D 4 HOH 206 606 507 HOH HOH A . D 4 HOH 207 607 508 HOH HOH A . D 4 HOH 208 608 509 HOH HOH A . D 4 HOH 209 609 510 HOH HOH A . D 4 HOH 210 610 511 HOH HOH A . D 4 HOH 211 611 512 HOH HOH A . D 4 HOH 212 612 513 HOH HOH A . D 4 HOH 213 613 514 HOH HOH A . D 4 HOH 214 614 515 HOH HOH A . D 4 HOH 215 615 516 HOH HOH A . D 4 HOH 216 616 517 HOH HOH A . D 4 HOH 217 617 518 HOH HOH A . D 4 HOH 218 618 519 HOH HOH A . D 4 HOH 219 619 520 HOH HOH A . D 4 HOH 220 620 521 HOH HOH A . D 4 HOH 221 621 522 HOH HOH A . D 4 HOH 222 622 523 HOH HOH A . D 4 HOH 223 623 524 HOH HOH A . D 4 HOH 224 624 525 HOH HOH A . D 4 HOH 225 625 526 HOH HOH A . D 4 HOH 226 626 527 HOH HOH A . D 4 HOH 227 627 528 HOH HOH A . D 4 HOH 228 628 529 HOH HOH A . D 4 HOH 229 629 530 HOH HOH A . D 4 HOH 230 630 531 HOH HOH A . D 4 HOH 231 631 532 HOH HOH A . D 4 HOH 232 632 533 HOH HOH A . D 4 HOH 233 633 534 HOH HOH A . D 4 HOH 234 634 535 HOH HOH A . D 4 HOH 235 635 536 HOH HOH A . D 4 HOH 236 636 537 HOH HOH A . D 4 HOH 237 637 538 HOH HOH A . D 4 HOH 238 638 539 HOH HOH A . D 4 HOH 239 639 540 HOH HOH A . D 4 HOH 240 640 541 HOH HOH A . D 4 HOH 241 641 542 HOH HOH A . D 4 HOH 242 642 543 HOH HOH A . D 4 HOH 243 643 544 HOH HOH A . D 4 HOH 244 644 545 HOH HOH A . D 4 HOH 245 645 546 HOH HOH A . D 4 HOH 246 646 547 HOH HOH A . D 4 HOH 247 647 548 HOH HOH A . D 4 HOH 248 648 549 HOH HOH A . D 4 HOH 249 649 550 HOH HOH A . D 4 HOH 250 650 551 HOH HOH A . D 4 HOH 251 651 552 HOH HOH A . D 4 HOH 252 652 553 HOH HOH A . D 4 HOH 253 653 554 HOH HOH A . D 4 HOH 254 654 555 HOH HOH A . D 4 HOH 255 655 556 HOH HOH A . D 4 HOH 256 656 557 HOH HOH A . D 4 HOH 257 657 558 HOH HOH A . D 4 HOH 258 658 559 HOH HOH A . D 4 HOH 259 659 560 HOH HOH A . D 4 HOH 260 660 561 HOH HOH A . D 4 HOH 261 661 562 HOH HOH A . D 4 HOH 262 662 563 HOH HOH A . D 4 HOH 263 663 564 HOH HOH A . D 4 HOH 264 664 565 HOH HOH A . D 4 HOH 265 665 566 HOH HOH A . D 4 HOH 266 666 567 HOH HOH A . D 4 HOH 267 667 568 HOH HOH A . D 4 HOH 268 668 569 HOH HOH A . D 4 HOH 269 669 570 HOH HOH A . D 4 HOH 270 670 571 HOH HOH A . D 4 HOH 271 671 572 HOH HOH A . D 4 HOH 272 672 573 HOH HOH A . D 4 HOH 273 673 574 HOH HOH A . D 4 HOH 274 674 575 HOH HOH A . D 4 HOH 275 675 576 HOH HOH A . D 4 HOH 276 676 577 HOH HOH A . D 4 HOH 277 677 578 HOH HOH A . D 4 HOH 278 678 579 HOH HOH A . D 4 HOH 279 679 580 HOH HOH A . D 4 HOH 280 680 581 HOH HOH A . D 4 HOH 281 681 582 HOH HOH A . D 4 HOH 282 682 583 HOH HOH A . D 4 HOH 283 683 584 HOH HOH A . D 4 HOH 284 684 585 HOH HOH A . D 4 HOH 285 685 586 HOH HOH A . D 4 HOH 286 686 587 HOH HOH A . D 4 HOH 287 687 588 HOH HOH A . D 4 HOH 288 688 589 HOH HOH A . D 4 HOH 289 689 590 HOH HOH A . D 4 HOH 290 690 591 HOH HOH A . D 4 HOH 291 691 592 HOH HOH A . D 4 HOH 292 692 593 HOH HOH A . D 4 HOH 293 693 594 HOH HOH A . D 4 HOH 294 694 595 HOH HOH A . D 4 HOH 295 695 596 HOH HOH A . D 4 HOH 296 696 597 HOH HOH A . D 4 HOH 297 697 598 HOH HOH A . D 4 HOH 298 698 599 HOH HOH A . D 4 HOH 299 699 600 HOH HOH A . D 4 HOH 300 700 601 HOH HOH A . D 4 HOH 301 701 602 HOH HOH A . D 4 HOH 302 702 603 HOH HOH A . D 4 HOH 303 703 604 HOH HOH A . D 4 HOH 304 704 605 HOH HOH A . D 4 HOH 305 705 606 HOH HOH A . D 4 HOH 306 706 607 HOH HOH A . D 4 HOH 307 707 608 HOH HOH A . D 4 HOH 308 708 609 HOH HOH A . D 4 HOH 309 709 610 HOH HOH A . D 4 HOH 310 710 611 HOH HOH A . D 4 HOH 311 711 612 HOH HOH A . D 4 HOH 312 712 613 HOH HOH A . D 4 HOH 313 713 614 HOH HOH A . D 4 HOH 314 714 615 HOH HOH A . D 4 HOH 315 715 616 HOH HOH A . D 4 HOH 316 716 617 HOH HOH A . D 4 HOH 317 717 618 HOH HOH A . D 4 HOH 318 718 619 HOH HOH A . D 4 HOH 319 719 620 HOH HOH A . D 4 HOH 320 720 621 HOH HOH A . D 4 HOH 321 721 622 HOH HOH A . D 4 HOH 322 722 623 HOH HOH A . D 4 HOH 323 723 624 HOH HOH A . D 4 HOH 324 724 625 HOH HOH A . D 4 HOH 325 725 626 HOH HOH A . D 4 HOH 326 726 627 HOH HOH A . D 4 HOH 327 727 628 HOH HOH A . D 4 HOH 328 728 629 HOH HOH A . D 4 HOH 329 729 630 HOH HOH A . D 4 HOH 330 730 631 HOH HOH A . D 4 HOH 331 731 632 HOH HOH A . D 4 HOH 332 732 633 HOH HOH A . D 4 HOH 333 733 634 HOH HOH A . D 4 HOH 334 734 635 HOH HOH A . D 4 HOH 335 735 636 HOH HOH A . D 4 HOH 336 736 637 HOH HOH A . D 4 HOH 337 737 638 HOH HOH A . D 4 HOH 338 738 639 HOH HOH A . D 4 HOH 339 739 640 HOH HOH A . D 4 HOH 340 740 641 HOH HOH A . D 4 HOH 341 741 642 HOH HOH A . D 4 HOH 342 742 643 HOH HOH A . D 4 HOH 343 743 644 HOH HOH A . D 4 HOH 344 744 645 HOH HOH A . D 4 HOH 345 745 646 HOH HOH A . D 4 HOH 346 746 647 HOH HOH A . D 4 HOH 347 747 648 HOH HOH A . D 4 HOH 348 748 649 HOH HOH A . D 4 HOH 349 749 650 HOH HOH A . D 4 HOH 350 750 651 HOH HOH A . D 4 HOH 351 751 652 HOH HOH A . D 4 HOH 352 752 653 HOH HOH A . D 4 HOH 353 753 654 HOH HOH A . D 4 HOH 354 754 655 HOH HOH A . D 4 HOH 355 755 656 HOH HOH A . D 4 HOH 356 756 657 HOH HOH A . D 4 HOH 357 757 658 HOH HOH A . D 4 HOH 358 758 659 HOH HOH A . D 4 HOH 359 759 660 HOH HOH A . D 4 HOH 360 760 661 HOH HOH A . D 4 HOH 361 761 662 HOH HOH A . D 4 HOH 362 762 663 HOH HOH A . D 4 HOH 363 763 664 HOH HOH A . D 4 HOH 364 764 665 HOH HOH A . D 4 HOH 365 765 666 HOH HOH A . D 4 HOH 366 766 667 HOH HOH A . D 4 HOH 367 767 668 HOH HOH A . D 4 HOH 368 768 669 HOH HOH A . D 4 HOH 369 769 670 HOH HOH A . D 4 HOH 370 770 671 HOH HOH A . D 4 HOH 371 771 672 HOH HOH A . D 4 HOH 372 772 673 HOH HOH A . D 4 HOH 373 773 674 HOH HOH A . D 4 HOH 374 774 675 HOH HOH A . D 4 HOH 375 775 676 HOH HOH A . D 4 HOH 376 776 677 HOH HOH A . D 4 HOH 377 777 678 HOH HOH A . D 4 HOH 378 778 679 HOH HOH A . D 4 HOH 379 779 680 HOH HOH A . D 4 HOH 380 780 681 HOH HOH A . D 4 HOH 381 781 682 HOH HOH A . D 4 HOH 382 782 683 HOH HOH A . D 4 HOH 383 783 684 HOH HOH A . D 4 HOH 384 784 685 HOH HOH A . D 4 HOH 385 785 686 HOH HOH A . D 4 HOH 386 786 687 HOH HOH A . D 4 HOH 387 787 688 HOH HOH A . D 4 HOH 388 788 689 HOH HOH A . D 4 HOH 389 789 690 HOH HOH A . D 4 HOH 390 790 691 HOH HOH A . D 4 HOH 391 791 692 HOH HOH A . D 4 HOH 392 792 693 HOH HOH A . D 4 HOH 393 793 694 HOH HOH A . D 4 HOH 394 794 695 HOH HOH A . D 4 HOH 395 795 696 HOH HOH A . D 4 HOH 396 796 697 HOH HOH A . D 4 HOH 397 797 698 HOH HOH A . D 4 HOH 398 798 699 HOH HOH A . D 4 HOH 399 799 700 HOH HOH A . D 4 HOH 400 800 701 HOH HOH A . D 4 HOH 401 801 702 HOH HOH A . D 4 HOH 402 802 703 HOH HOH A . D 4 HOH 403 803 704 HOH HOH A . D 4 HOH 404 804 705 HOH HOH A . D 4 HOH 405 805 706 HOH HOH A . D 4 HOH 406 806 707 HOH HOH A . D 4 HOH 407 807 708 HOH HOH A . D 4 HOH 408 808 709 HOH HOH A . D 4 HOH 409 809 710 HOH HOH A . D 4 HOH 410 810 711 HOH HOH A . D 4 HOH 411 811 712 HOH HOH A . D 4 HOH 412 812 713 HOH HOH A . D 4 HOH 413 813 714 HOH HOH A . D 4 HOH 414 814 715 HOH HOH A . D 4 HOH 415 815 716 HOH HOH A . D 4 HOH 416 816 717 HOH HOH A . D 4 HOH 417 817 718 HOH HOH A . D 4 HOH 418 818 719 HOH HOH A . D 4 HOH 419 819 720 HOH HOH A . D 4 HOH 420 820 721 HOH HOH A . D 4 HOH 421 821 722 HOH HOH A . D 4 HOH 422 822 723 HOH HOH A . D 4 HOH 423 823 724 HOH HOH A . D 4 HOH 424 824 725 HOH HOH A . D 4 HOH 425 825 726 HOH HOH A . D 4 HOH 426 826 727 HOH HOH A . D 4 HOH 427 827 728 HOH HOH A . D 4 HOH 428 828 729 HOH HOH A . D 4 HOH 429 829 730 HOH HOH A . D 4 HOH 430 830 731 HOH HOH A . D 4 HOH 431 831 732 HOH HOH A . D 4 HOH 432 832 733 HOH HOH A . D 4 HOH 433 833 734 HOH HOH A . D 4 HOH 434 834 735 HOH HOH A . D 4 HOH 435 835 736 HOH HOH A . D 4 HOH 436 836 737 HOH HOH A . D 4 HOH 437 837 738 HOH HOH A . D 4 HOH 438 838 739 HOH HOH A . D 4 HOH 439 839 740 HOH HOH A . D 4 HOH 440 840 741 HOH HOH A . D 4 HOH 441 841 742 HOH HOH A . D 4 HOH 442 842 743 HOH HOH A . D 4 HOH 443 843 744 HOH HOH A . D 4 HOH 444 844 745 HOH HOH A . D 4 HOH 445 845 746 HOH HOH A . D 4 HOH 446 846 747 HOH HOH A . D 4 HOH 447 847 748 HOH HOH A . D 4 HOH 448 848 749 HOH HOH A . D 4 HOH 449 849 750 HOH HOH A . D 4 HOH 450 850 751 HOH HOH A . D 4 HOH 451 851 752 HOH HOH A . D 4 HOH 452 852 753 HOH HOH A . D 4 HOH 453 853 754 HOH HOH A . D 4 HOH 454 854 755 HOH HOH A . D 4 HOH 455 855 756 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 27 ? CG ? A LYS 5 CG 2 1 Y 1 A LYS 27 ? CD ? A LYS 5 CD 3 1 Y 1 A LYS 27 ? CE ? A LYS 5 CE 4 1 Y 1 A LYS 27 ? NZ ? A LYS 5 NZ 5 1 Y 1 A LYS 78 ? CG ? A LYS 56 CG 6 1 Y 1 A LYS 78 ? CD ? A LYS 56 CD 7 1 Y 1 A LYS 78 ? CE ? A LYS 56 CE 8 1 Y 1 A LYS 78 ? NZ ? A LYS 56 NZ # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 MOLREP . ? ? ? ? phasing ? ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 REFMAC 5.8.0069 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? # _cell.entry_id 4Q5K _cell.length_a 49.471 _cell.length_b 60.930 _cell.length_c 80.122 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4Q5K _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4Q5K # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 45.20 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '29% polyethylene glycol 4000, 0.1mM Tris pH8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Vertical focusing mirror; double crystal Si(111) monochromator' _diffrn_detector.pdbx_collection_date 2014-03-18 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL14-1 _diffrn_source.type 'SSRL BEAMLINE BL14-1' _diffrn_source.pdbx_wavelength 1.0 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4Q5K _reflns.d_resolution_high 1.30 _reflns.d_resolution_low 40.061 _reflns.number_obs 60273 _reflns.pdbx_Rmerge_I_obs 0.039 _reflns.pdbx_netI_over_sigmaI 20.410 _reflns.percent_possible_obs 99.900 _reflns.B_iso_Wilson_estimate 12.667 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 3.99 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.300 1.350 25124 ? 6373 0.558 2.540 ? ? 3.94 ? ? 99.900 1 1 1.350 1.400 21731 ? 5495 0.416 3.4 ? ? ? ? ? 100.000 2 1 1.400 1.460 22350 ? 5637 0.300 4.6 ? ? ? ? ? 100.000 3 1 1.460 1.540 24794 ? 6219 0.203 6.9 ? ? ? ? ? 99.900 4 1 1.540 1.640 24832 ? 6183 0.136 10.1 ? ? ? ? ? 99.900 5 1 1.640 1.760 22916 ? 5697 0.091 14.6 ? ? ? ? ? 99.900 6 1 1.760 1.940 24657 ? 6138 0.056 22.4 ? ? ? ? ? 99.900 7 1 1.940 2.220 24395 ? 6036 0.033 34.7 ? ? ? ? ? 99.900 8 1 2.220 2.800 24872 ? 6176 0.026 44.3 ? ? ? ? ? 99.900 9 1 2.800 40.061 24647 ? 6319 0.019 56.9 ? ? ? ? ? 99.300 10 1 # _refine.entry_id 4Q5K _refine.ls_d_res_high 1.3000 _refine.ls_d_res_low 40.061 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.8700 _refine.ls_number_reflns_obs 60203 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 3. N-ACETYL-GLUCOSAMINE-1,6-ANHYDRO-N-ACETYLMURAMIC ACID (GML) MODELED WAS PRESENT IN CRYSTALLIZATION CONDITION. 4. DENSITIES FOR THE LOOP 79-83 ARE WEAK. 5. CRYTALS WERE OBTAINED BY COCROSTALLIZATION IN PRESENCE OF 0.93 MILLIMOLAR GLCNAC-1,6-ANHYDRO-MURNAC. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1173 _refine.ls_R_factor_R_work 0.1156 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1494 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.9000 _refine.ls_number_reflns_R_free 2940 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 17.7834 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.3500 _refine.aniso_B[2][2] 0.2600 _refine.aniso_B[3][3] 0.0900 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9820 _refine.correlation_coeff_Fo_to_Fc_free 0.9740 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0410 _refine.pdbx_overall_ESU_R_Free 0.0410 _refine.overall_SU_ML 0.0260 _refine.overall_SU_B 1.3820 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 4H4J _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 78.320 _refine.B_iso_min 7.360 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.150 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1839 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 455 _refine_hist.number_atoms_total 2328 _refine_hist.d_res_high 1.3000 _refine_hist.d_res_low 40.061 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2061 0.011 0.022 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 2028 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2826 1.372 1.976 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 4730 0.771 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 280 5.854 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 84 33.285 25.357 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 394 11.483 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 8 15.576 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 328 0.080 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2317 0.006 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 420 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 996 1.648 1.309 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 995 1.576 1.306 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1256 2.280 1.973 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 4089 1.964 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_free 259 26.120 5.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded 4236 8.883 5.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.3000 _refine_ls_shell.d_res_low 1.3340 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.8900 _refine_ls_shell.number_reflns_R_work 4194 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2130 _refine_ls_shell.R_factor_R_free 0.2390 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 217 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 4411 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.title 'Crystal structure of a N-acetylmuramoyl-L-alanine amidase (BACUNI_02947) from Bacteroides uniformis ATCC 8492 at 1.30 A resolution' _struct.entry_id 4Q5K _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.text ;PF07313 family protein, DUF 1460, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.entry_id 4Q5K # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A7V5T8_BACUN _struct_ref.pdbx_db_accession A7V5T8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QGGKDMLSNGIKYLDVPYVAHTLEADGPEELVINCDEVDCTTLVEYVLAETLTPKLADGDISESAFADNLQKIRYRDGKI DGYTSRLHYIADWINNGVRNGFLQDVTGAMSPDTERLSISYMSSHPQLYKQLANSPENVAKMKKIEQSLSGKEVHYLPKA KLPADGLPWIKDGDIIAITTNTPGLDVAHMGIAFYADNKLLLVHASSTDKKVVVSKVPLSQMLKDNNKWTGIRVLRMKK ; _struct_ref.pdbx_align_begin 24 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4Q5K _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 240 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A7V5T8 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 262 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 24 _struct_ref_seq.pdbx_auth_seq_align_end 262 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4Q5K _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A7V5T8 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 6 ? LYS A 13 ? ASP A 28 LYS A 35 1 ? 8 HELX_P HELX_P2 2 ASP A 40 ? THR A 54 ? ASP A 62 THR A 76 1 ? 15 HELX_P HELX_P3 3 SER A 63 ? TYR A 76 ? SER A 85 TYR A 98 1 ? 14 HELX_P HELX_P4 4 ARG A 77 ? LYS A 80 ? ARG A 99 LYS A 102 5 ? 4 HELX_P HELX_P5 5 GLY A 83 ? ARG A 87 ? GLY A 105 ARG A 109 5 ? 5 HELX_P HELX_P6 6 TYR A 90 ? ASN A 101 ? TYR A 112 ASN A 123 1 ? 12 HELX_P HELX_P7 7 VAL A 107 ? SER A 112 ? VAL A 129 SER A 134 1 ? 6 HELX_P HELX_P8 8 SER A 121 ? HIS A 126 ? SER A 143 HIS A 148 1 ? 6 HELX_P HELX_P9 9 PRO A 127 ? LEU A 129 ? PRO A 149 LEU A 151 5 ? 3 HELX_P HELX_P10 10 TYR A 130 ? ASN A 135 ? TYR A 152 ASN A 157 1 ? 6 HELX_P HELX_P11 11 SER A 136 ? SER A 151 ? SER A 158 SER A 173 1 ? 16 HELX_P HELX_P12 12 ALA A 161 ? LEU A 163 ? ALA A 183 LEU A 185 5 ? 3 HELX_P HELX_P13 13 PRO A 219 ? ASN A 227 ? PRO A 241 ASN A 249 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASP 6 C ? ? ? 1_555 A MSE 7 N ? ? A ASP 28 A MSE 29 1_555 ? ? ? ? ? ? ? 1.308 ? ? covale2 covale both ? A MSE 7 C ? ? ? 1_555 A LEU 8 N ? ? A MSE 29 A LEU 30 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale3 covale both ? A ALA 110 C ? ? ? 1_555 A MSE 111 N ? ? A ALA 132 A MSE 133 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale4 covale both ? A MSE 111 C ? ? ? 1_555 A SER 112 N ? ? A MSE 133 A SER 134 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale both ? A TYR 122 C ? ? ? 1_555 A MSE 123 N ? ? A TYR 144 A MSE 145 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale6 covale both ? A MSE 123 C ? ? ? 1_555 A SER 124 N ? ? A MSE 145 A SER 146 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale7 covale both ? A LYS 142 C ? ? ? 1_555 A MSE 143 N ? ? A LYS 164 A MSE 165 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale8 covale both ? A MSE 143 C ? ? ? 1_555 A LYS 144 N ? ? A MSE 165 A LYS 166 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale9 covale both ? A HIS 190 C ? ? ? 1_555 A MSE 191 N ? ? A HIS 212 A MSE 213 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale10 covale both ? A MSE 191 C ? ? ? 1_555 A GLY 192 N ? ? A MSE 213 A GLY 214 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale11 covale both ? A GLN 222 C ? ? ? 1_555 A MSE 223 N ? ? A GLN 244 A MSE 245 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale12 covale both ? A MSE 223 C ? ? ? 1_555 A LEU 224 N ? ? A MSE 245 A LEU 246 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale13 covale both ? A ARG 237 C ? ? ? 1_555 A MSE 238 N ? ? A ARG 259 A MSE 260 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale14 covale both ? A MSE 238 C ? ? ? 1_555 A LYS 239 N ? ? A MSE 260 A LYS 261 1_555 ? ? ? ? ? ? ? 1.330 ? ? metalc1 metalc ? ? A THR 181 O ? ? ? 1_555 C NA . NA ? ? A THR 203 A NA 302 1_555 ? ? ? ? ? ? ? 2.567 ? ? metalc2 metalc ? ? A THR 183 O ? ? ? 1_555 C NA . NA ? ? A THR 205 A NA 302 1_555 ? ? ? ? ? ? ? 2.549 ? ? metalc3 metalc ? ? A LEU 186 O ? ? ? 1_555 C NA . NA ? ? A LEU 208 A NA 302 1_555 ? ? ? ? ? ? ? 2.293 ? ? metalc4 metalc ? ? C NA . NA ? ? ? 1_555 D HOH . O ? ? A NA 302 A HOH 473 1_555 ? ? ? ? ? ? ? 2.507 ? ? metalc5 metalc ? ? C NA . NA ? ? ? 1_555 D HOH . O ? ? A NA 302 A HOH 487 1_555 ? ? ? ? ? ? ? 2.461 ? ? metalc6 metalc ? ? C NA . NA ? ? ? 1_555 D HOH . O ? ? A NA 302 A HOH 521 1_555 ? ? ? ? ? ? ? 2.383 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A THR 181 ? A THR 203 ? 1_555 NA ? C NA . ? A NA 302 ? 1_555 O ? A THR 183 ? A THR 205 ? 1_555 107.6 ? 2 O ? A THR 181 ? A THR 203 ? 1_555 NA ? C NA . ? A NA 302 ? 1_555 O ? A LEU 186 ? A LEU 208 ? 1_555 90.8 ? 3 O ? A THR 183 ? A THR 205 ? 1_555 NA ? C NA . ? A NA 302 ? 1_555 O ? A LEU 186 ? A LEU 208 ? 1_555 86.3 ? 4 O ? A THR 181 ? A THR 203 ? 1_555 NA ? C NA . ? A NA 302 ? 1_555 O ? D HOH . ? A HOH 473 ? 1_555 165.4 ? 5 O ? A THR 183 ? A THR 205 ? 1_555 NA ? C NA . ? A NA 302 ? 1_555 O ? D HOH . ? A HOH 473 ? 1_555 86.7 ? 6 O ? A LEU 186 ? A LEU 208 ? 1_555 NA ? C NA . ? A NA 302 ? 1_555 O ? D HOH . ? A HOH 473 ? 1_555 93.1 ? 7 O ? A THR 181 ? A THR 203 ? 1_555 NA ? C NA . ? A NA 302 ? 1_555 O ? D HOH . ? A HOH 487 ? 1_555 83.3 ? 8 O ? A THR 183 ? A THR 205 ? 1_555 NA ? C NA . ? A NA 302 ? 1_555 O ? D HOH . ? A HOH 487 ? 1_555 166.5 ? 9 O ? A LEU 186 ? A LEU 208 ? 1_555 NA ? C NA . ? A NA 302 ? 1_555 O ? D HOH . ? A HOH 487 ? 1_555 85.5 ? 10 O ? D HOH . ? A HOH 473 ? 1_555 NA ? C NA . ? A NA 302 ? 1_555 O ? D HOH . ? A HOH 487 ? 1_555 83.0 ? 11 O ? A THR 181 ? A THR 203 ? 1_555 NA ? C NA . ? A NA 302 ? 1_555 O ? D HOH . ? A HOH 521 ? 1_555 91.4 ? 12 O ? A THR 183 ? A THR 205 ? 1_555 NA ? C NA . ? A NA 302 ? 1_555 O ? D HOH . ? A HOH 521 ? 1_555 100.0 ? 13 O ? A LEU 186 ? A LEU 208 ? 1_555 NA ? C NA . ? A NA 302 ? 1_555 O ? D HOH . ? A HOH 521 ? 1_555 172.4 ? 14 O ? D HOH . ? A HOH 473 ? 1_555 NA ? C NA . ? A NA 302 ? 1_555 O ? D HOH . ? A HOH 521 ? 1_555 83.1 ? 15 O ? D HOH . ? A HOH 487 ? 1_555 NA ? C NA . ? A NA 302 ? 1_555 O ? D HOH . ? A HOH 521 ? 1_555 87.5 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 7 ? . . . . MSE A 29 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 111 ? . . . . MSE A 133 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE A 123 ? . . . . MSE A 145 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 4 MSE A 143 ? . . . . MSE A 165 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 5 MSE A 191 ? . . . . MSE A 213 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 6 MSE A 223 ? . . . . MSE A 245 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 7 MSE A 238 ? . . . . MSE A 260 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 6 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 104 ? ASP A 106 ? LEU A 126 ASP A 128 A 2 TRP A 230 ? MSE A 238 ? TRP A 252 MSE A 260 A 3 LEU A 158 ? PRO A 159 ? LEU A 180 PRO A 181 B 1 LEU A 104 ? ASP A 106 ? LEU A 126 ASP A 128 B 2 TRP A 230 ? MSE A 238 ? TRP A 252 MSE A 260 B 3 ILE A 176 ? THR A 181 ? ILE A 198 THR A 203 B 4 VAL A 188 ? ALA A 197 ? VAL A 210 ALA A 219 B 5 LYS A 200 ? SER A 207 ? LYS A 222 SER A 229 B 6 LYS A 212 ? VAL A 215 ? LYS A 234 VAL A 237 C 1 THR A 115 ? ARG A 117 ? THR A 137 ARG A 139 C 2 GLU A 154 ? HIS A 156 ? GLU A 176 HIS A 178 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 105 ? N GLN A 127 O ARG A 237 ? O ARG A 259 A 2 3 O ILE A 233 ? O ILE A 255 N LEU A 158 ? N LEU A 180 B 1 2 N GLN A 105 ? N GLN A 127 O ARG A 237 ? O ARG A 259 B 2 3 O LEU A 236 ? O LEU A 258 N ILE A 176 ? N ILE A 198 B 3 4 N ILE A 177 ? N ILE A 199 O GLY A 192 ? O GLY A 214 B 4 5 N PHE A 195 ? N PHE A 217 O LEU A 202 ? O LEU A 224 B 5 6 N HIS A 205 ? N HIS A 227 O VAL A 214 ? O VAL A 236 C 1 2 N GLU A 116 ? N GLU A 138 O VAL A 155 ? O VAL A 177 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 2YP 301 ? 23 'BINDING SITE FOR RESIDUE 2YP A 301' AC2 Software A NA 302 ? 6 'BINDING SITE FOR RESIDUE NA A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 23 TYR A 19 ? TYR A 41 . ? 1_555 ? 2 AC1 23 ASP A 40 ? ASP A 62 . ? 1_555 ? 3 AC1 23 CYS A 41 ? CYS A 63 . ? 1_555 ? 4 AC1 23 THR A 42 ? THR A 64 . ? 1_555 ? 5 AC1 23 ARG A 87 ? ARG A 109 . ? 1_555 ? 6 AC1 23 HIS A 89 ? HIS A 111 . ? 1_555 ? 7 AC1 23 TYR A 122 ? TYR A 144 . ? 1_555 ? 8 AC1 23 TYR A 130 ? TYR A 152 . ? 1_555 ? 9 AC1 23 LEU A 186 ? LEU A 208 . ? 1_555 ? 10 AC1 23 VAL A 188 ? VAL A 210 . ? 1_555 ? 11 AC1 23 ALA A 189 ? ALA A 211 . ? 1_555 ? 12 AC1 23 HIS A 190 ? HIS A 212 . ? 1_555 ? 13 AC1 23 HOH D . ? HOH A 401 . ? 1_555 ? 14 AC1 23 HOH D . ? HOH A 439 . ? 1_555 ? 15 AC1 23 HOH D . ? HOH A 442 . ? 1_555 ? 16 AC1 23 HOH D . ? HOH A 497 . ? 1_555 ? 17 AC1 23 HOH D . ? HOH A 534 . ? 1_555 ? 18 AC1 23 HOH D . ? HOH A 606 . ? 1_555 ? 19 AC1 23 HOH D . ? HOH A 660 . ? 1_555 ? 20 AC1 23 HOH D . ? HOH A 734 . ? 1_555 ? 21 AC1 23 HOH D . ? HOH A 808 . ? 1_555 ? 22 AC1 23 HOH D . ? HOH A 829 . ? 1_555 ? 23 AC1 23 HOH D . ? HOH A 850 . ? 1_555 ? 24 AC2 6 THR A 181 ? THR A 203 . ? 1_555 ? 25 AC2 6 THR A 183 ? THR A 205 . ? 1_555 ? 26 AC2 6 LEU A 186 ? LEU A 208 . ? 1_555 ? 27 AC2 6 HOH D . ? HOH A 473 . ? 1_555 ? 28 AC2 6 HOH D . ? HOH A 487 . ? 1_555 ? 29 AC2 6 HOH D . ? HOH A 521 . ? 1_555 ? # _pdbx_entry_details.entry_id 4Q5K _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (24-262) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 38 ? ? 76.94 -5.27 2 1 ASP A 83 ? ? 62.44 -157.05 3 1 ASP A 104 ? ? -152.61 75.59 4 1 SER A 143 ? ? -163.05 6.83 5 1 ASN A 157 ? ? -145.82 45.62 # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 7 A MSE 29 ? MET SELENOMETHIONINE 2 A MSE 111 A MSE 133 ? MET SELENOMETHIONINE 3 A MSE 123 A MSE 145 ? MET SELENOMETHIONINE 4 A MSE 143 A MSE 165 ? MET SELENOMETHIONINE 5 A MSE 191 A MSE 213 ? MET SELENOMETHIONINE 6 A MSE 223 A MSE 245 ? MET SELENOMETHIONINE 7 A MSE 238 A MSE 260 ? MET SELENOMETHIONINE # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLN 24 ? A GLN 2 3 1 Y 1 A GLY 25 ? A GLY 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2YP C1 C N S 1 2YP O1 O N N 2 2YP C2 C N R 3 2YP C3 C N R 4 2YP O3 O N N 5 2YP C4 C N S 6 2YP OAC O N N 7 2YP CAB C N N 8 2YP CAA C N N 9 2YP N2 N N N 10 2YP O4 O N N 11 2YP C5 C N R 12 2YP C6 C N N 13 2YP O6 O N N 14 2YP O5 O N N 15 2YP CA4 C N S 16 2YP CA3 C N R 17 2YP OAH O N N 18 2YP CAI C N R 19 2YP CAJ C N N 20 2YP CAL C N N 21 2YP OAM O N N 22 2YP O O N N 23 2YP CA5 C N R 24 2YP OA5 O N N 25 2YP CA6 C N N 26 2YP OA6 O N N 27 2YP CA1 C N R 28 2YP CA2 C N R 29 2YP NAD N N N 30 2YP CAE C N N 31 2YP OAG O N N 32 2YP CAF C N N 33 2YP H1 H N N 34 2YP H2 H N N 35 2YP H3 H N N 36 2YP H4 H N N 37 2YP H5 H N N 38 2YP H6 H N N 39 2YP H7 H N N 40 2YP H8 H N N 41 2YP H9 H N N 42 2YP H10 H N N 43 2YP H11 H N N 44 2YP H12 H N N 45 2YP H13 H N N 46 2YP H14 H N N 47 2YP H15 H N N 48 2YP H16 H N N 49 2YP H17 H N N 50 2YP H18 H N N 51 2YP H19 H N N 52 2YP H20 H N N 53 2YP H21 H N N 54 2YP H22 H N N 55 2YP H23 H N N 56 2YP H24 H N N 57 2YP H25 H N N 58 2YP H26 H N N 59 2YP H27 H N N 60 2YP H28 H N N 61 2YP H29 H N N 62 2YP H30 H N N 63 ALA N N N N 64 ALA CA C N S 65 ALA C C N N 66 ALA O O N N 67 ALA CB C N N 68 ALA OXT O N N 69 ALA H H N N 70 ALA H2 H N N 71 ALA HA H N N 72 ALA HB1 H N N 73 ALA HB2 H N N 74 ALA HB3 H N N 75 ALA HXT H N N 76 ARG N N N N 77 ARG CA C N S 78 ARG C C N N 79 ARG O O N N 80 ARG CB C N N 81 ARG CG C N N 82 ARG CD C N N 83 ARG NE N N N 84 ARG CZ C N N 85 ARG NH1 N N N 86 ARG NH2 N N N 87 ARG OXT O N N 88 ARG H H N N 89 ARG H2 H N N 90 ARG HA H N N 91 ARG HB2 H N N 92 ARG HB3 H N N 93 ARG HG2 H N N 94 ARG HG3 H N N 95 ARG HD2 H N N 96 ARG HD3 H N N 97 ARG HE H N N 98 ARG HH11 H N N 99 ARG HH12 H N N 100 ARG HH21 H N N 101 ARG HH22 H N N 102 ARG HXT H N N 103 ASN N N N N 104 ASN CA C N S 105 ASN C C N N 106 ASN O O N N 107 ASN CB C N N 108 ASN CG C N N 109 ASN OD1 O N N 110 ASN ND2 N N N 111 ASN OXT O N N 112 ASN H H N N 113 ASN H2 H N N 114 ASN HA H N N 115 ASN HB2 H N N 116 ASN HB3 H N N 117 ASN HD21 H N N 118 ASN HD22 H N N 119 ASN HXT H N N 120 ASP N N N N 121 ASP CA C N S 122 ASP C C N N 123 ASP O O N N 124 ASP CB C N N 125 ASP CG C N N 126 ASP OD1 O N N 127 ASP OD2 O N N 128 ASP OXT O N N 129 ASP H H N N 130 ASP H2 H N N 131 ASP HA H N N 132 ASP HB2 H N N 133 ASP HB3 H N N 134 ASP HD2 H N N 135 ASP HXT H N N 136 CYS N N N N 137 CYS CA C N R 138 CYS C C N N 139 CYS O O N N 140 CYS CB C N N 141 CYS SG S N N 142 CYS OXT O N N 143 CYS H H N N 144 CYS H2 H N N 145 CYS HA H N N 146 CYS HB2 H N N 147 CYS HB3 H N N 148 CYS HG H N N 149 CYS HXT H N N 150 GLN N N N N 151 GLN CA C N S 152 GLN C C N N 153 GLN O O N N 154 GLN CB C N N 155 GLN CG C N N 156 GLN CD C N N 157 GLN OE1 O N N 158 GLN NE2 N N N 159 GLN OXT O N N 160 GLN H H N N 161 GLN H2 H N N 162 GLN HA H N N 163 GLN HB2 H N N 164 GLN HB3 H N N 165 GLN HG2 H N N 166 GLN HG3 H N N 167 GLN HE21 H N N 168 GLN HE22 H N N 169 GLN HXT H N N 170 GLU N N N N 171 GLU CA C N S 172 GLU C C N N 173 GLU O O N N 174 GLU CB C N N 175 GLU CG C N N 176 GLU CD C N N 177 GLU OE1 O N N 178 GLU OE2 O N N 179 GLU OXT O N N 180 GLU H H N N 181 GLU H2 H N N 182 GLU HA H N N 183 GLU HB2 H N N 184 GLU HB3 H N N 185 GLU HG2 H N N 186 GLU HG3 H N N 187 GLU HE2 H N N 188 GLU HXT H N N 189 GLY N N N N 190 GLY CA C N N 191 GLY C C N N 192 GLY O O N N 193 GLY OXT O N N 194 GLY H H N N 195 GLY H2 H N N 196 GLY HA2 H N N 197 GLY HA3 H N N 198 GLY HXT H N N 199 HIS N N N N 200 HIS CA C N S 201 HIS C C N N 202 HIS O O N N 203 HIS CB C N N 204 HIS CG C Y N 205 HIS ND1 N Y N 206 HIS CD2 C Y N 207 HIS CE1 C Y N 208 HIS NE2 N Y N 209 HIS OXT O N N 210 HIS H H N N 211 HIS H2 H N N 212 HIS HA H N N 213 HIS HB2 H N N 214 HIS HB3 H N N 215 HIS HD1 H N N 216 HIS HD2 H N N 217 HIS HE1 H N N 218 HIS HE2 H N N 219 HIS HXT H N N 220 HOH O O N N 221 HOH H1 H N N 222 HOH H2 H N N 223 ILE N N N N 224 ILE CA C N S 225 ILE C C N N 226 ILE O O N N 227 ILE CB C N S 228 ILE CG1 C N N 229 ILE CG2 C N N 230 ILE CD1 C N N 231 ILE OXT O N N 232 ILE H H N N 233 ILE H2 H N N 234 ILE HA H N N 235 ILE HB H N N 236 ILE HG12 H N N 237 ILE HG13 H N N 238 ILE HG21 H N N 239 ILE HG22 H N N 240 ILE HG23 H N N 241 ILE HD11 H N N 242 ILE HD12 H N N 243 ILE HD13 H N N 244 ILE HXT H N N 245 LEU N N N N 246 LEU CA C N S 247 LEU C C N N 248 LEU O O N N 249 LEU CB C N N 250 LEU CG C N N 251 LEU CD1 C N N 252 LEU CD2 C N N 253 LEU OXT O N N 254 LEU H H N N 255 LEU H2 H N N 256 LEU HA H N N 257 LEU HB2 H N N 258 LEU HB3 H N N 259 LEU HG H N N 260 LEU HD11 H N N 261 LEU HD12 H N N 262 LEU HD13 H N N 263 LEU HD21 H N N 264 LEU HD22 H N N 265 LEU HD23 H N N 266 LEU HXT H N N 267 LYS N N N N 268 LYS CA C N S 269 LYS C C N N 270 LYS O O N N 271 LYS CB C N N 272 LYS CG C N N 273 LYS CD C N N 274 LYS CE C N N 275 LYS NZ N N N 276 LYS OXT O N N 277 LYS H H N N 278 LYS H2 H N N 279 LYS HA H N N 280 LYS HB2 H N N 281 LYS HB3 H N N 282 LYS HG2 H N N 283 LYS HG3 H N N 284 LYS HD2 H N N 285 LYS HD3 H N N 286 LYS HE2 H N N 287 LYS HE3 H N N 288 LYS HZ1 H N N 289 LYS HZ2 H N N 290 LYS HZ3 H N N 291 LYS HXT H N N 292 MSE N N N N 293 MSE CA C N S 294 MSE C C N N 295 MSE O O N N 296 MSE OXT O N N 297 MSE CB C N N 298 MSE CG C N N 299 MSE SE SE N N 300 MSE CE C N N 301 MSE H H N N 302 MSE H2 H N N 303 MSE HA H N N 304 MSE HXT H N N 305 MSE HB2 H N N 306 MSE HB3 H N N 307 MSE HG2 H N N 308 MSE HG3 H N N 309 MSE HE1 H N N 310 MSE HE2 H N N 311 MSE HE3 H N N 312 NA NA NA N N 313 PHE N N N N 314 PHE CA C N S 315 PHE C C N N 316 PHE O O N N 317 PHE CB C N N 318 PHE CG C Y N 319 PHE CD1 C Y N 320 PHE CD2 C Y N 321 PHE CE1 C Y N 322 PHE CE2 C Y N 323 PHE CZ C Y N 324 PHE OXT O N N 325 PHE H H N N 326 PHE H2 H N N 327 PHE HA H N N 328 PHE HB2 H N N 329 PHE HB3 H N N 330 PHE HD1 H N N 331 PHE HD2 H N N 332 PHE HE1 H N N 333 PHE HE2 H N N 334 PHE HZ H N N 335 PHE HXT H N N 336 PRO N N N N 337 PRO CA C N S 338 PRO C C N N 339 PRO O O N N 340 PRO CB C N N 341 PRO CG C N N 342 PRO CD C N N 343 PRO OXT O N N 344 PRO H H N N 345 PRO HA H N N 346 PRO HB2 H N N 347 PRO HB3 H N N 348 PRO HG2 H N N 349 PRO HG3 H N N 350 PRO HD2 H N N 351 PRO HD3 H N N 352 PRO HXT H N N 353 SER N N N N 354 SER CA C N S 355 SER C C N N 356 SER O O N N 357 SER CB C N N 358 SER OG O N N 359 SER OXT O N N 360 SER H H N N 361 SER H2 H N N 362 SER HA H N N 363 SER HB2 H N N 364 SER HB3 H N N 365 SER HG H N N 366 SER HXT H N N 367 THR N N N N 368 THR CA C N S 369 THR C C N N 370 THR O O N N 371 THR CB C N R 372 THR OG1 O N N 373 THR CG2 C N N 374 THR OXT O N N 375 THR H H N N 376 THR H2 H N N 377 THR HA H N N 378 THR HB H N N 379 THR HG1 H N N 380 THR HG21 H N N 381 THR HG22 H N N 382 THR HG23 H N N 383 THR HXT H N N 384 TRP N N N N 385 TRP CA C N S 386 TRP C C N N 387 TRP O O N N 388 TRP CB C N N 389 TRP CG C Y N 390 TRP CD1 C Y N 391 TRP CD2 C Y N 392 TRP NE1 N Y N 393 TRP CE2 C Y N 394 TRP CE3 C Y N 395 TRP CZ2 C Y N 396 TRP CZ3 C Y N 397 TRP CH2 C Y N 398 TRP OXT O N N 399 TRP H H N N 400 TRP H2 H N N 401 TRP HA H N N 402 TRP HB2 H N N 403 TRP HB3 H N N 404 TRP HD1 H N N 405 TRP HE1 H N N 406 TRP HE3 H N N 407 TRP HZ2 H N N 408 TRP HZ3 H N N 409 TRP HH2 H N N 410 TRP HXT H N N 411 TYR N N N N 412 TYR CA C N S 413 TYR C C N N 414 TYR O O N N 415 TYR CB C N N 416 TYR CG C Y N 417 TYR CD1 C Y N 418 TYR CD2 C Y N 419 TYR CE1 C Y N 420 TYR CE2 C Y N 421 TYR CZ C Y N 422 TYR OH O N N 423 TYR OXT O N N 424 TYR H H N N 425 TYR H2 H N N 426 TYR HA H N N 427 TYR HB2 H N N 428 TYR HB3 H N N 429 TYR HD1 H N N 430 TYR HD2 H N N 431 TYR HE1 H N N 432 TYR HE2 H N N 433 TYR HH H N N 434 TYR HXT H N N 435 VAL N N N N 436 VAL CA C N S 437 VAL C C N N 438 VAL O O N N 439 VAL CB C N N 440 VAL CG1 C N N 441 VAL CG2 C N N 442 VAL OXT O N N 443 VAL H H N N 444 VAL H2 H N N 445 VAL HA H N N 446 VAL HB H N N 447 VAL HG11 H N N 448 VAL HG12 H N N 449 VAL HG13 H N N 450 VAL HG21 H N N 451 VAL HG22 H N N 452 VAL HG23 H N N 453 VAL HXT H N N 454 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2YP OAM CAL doub N N 1 2YP CAL O sing N N 2 2YP CAL CAI sing N N 3 2YP CAJ CAI sing N N 4 2YP CAI OAH sing N N 5 2YP OAH CA3 sing N N 6 2YP O6 C6 sing N N 7 2YP OAG CAE doub N N 8 2YP CA3 CA2 sing N N 9 2YP CA3 CA4 sing N N 10 2YP C6 C5 sing N N 11 2YP CAE NAD sing N N 12 2YP CAE CAF sing N N 13 2YP CA2 NAD sing N N 14 2YP CA2 CA1 sing N N 15 2YP CA4 O1 sing N N 16 2YP CA4 CA5 sing N N 17 2YP O5 C5 sing N N 18 2YP O5 C1 sing N N 19 2YP O1 C1 sing N N 20 2YP C5 C4 sing N N 21 2YP OA6 CA6 sing N N 22 2YP OA6 CA1 sing N N 23 2YP CA6 CA5 sing N N 24 2YP C1 C2 sing N N 25 2YP CA1 OA5 sing N N 26 2YP C4 O4 sing N N 27 2YP C4 C3 sing N N 28 2YP CA5 OA5 sing N N 29 2YP OAC CAB doub N N 30 2YP C2 C3 sing N N 31 2YP C2 N2 sing N N 32 2YP C3 O3 sing N N 33 2YP CAB N2 sing N N 34 2YP CAB CAA sing N N 35 2YP C1 H1 sing N N 36 2YP C2 H2 sing N N 37 2YP C3 H3 sing N N 38 2YP O3 H4 sing N N 39 2YP C4 H5 sing N N 40 2YP CAA H6 sing N N 41 2YP CAA H7 sing N N 42 2YP CAA H8 sing N N 43 2YP N2 H9 sing N N 44 2YP O4 H10 sing N N 45 2YP C5 H11 sing N N 46 2YP C6 H12 sing N N 47 2YP C6 H13 sing N N 48 2YP O6 H14 sing N N 49 2YP CA4 H15 sing N N 50 2YP CA3 H16 sing N N 51 2YP CAI H17 sing N N 52 2YP CAJ H18 sing N N 53 2YP CAJ H19 sing N N 54 2YP CAJ H20 sing N N 55 2YP O H21 sing N N 56 2YP CA5 H22 sing N N 57 2YP CA6 H23 sing N N 58 2YP CA6 H24 sing N N 59 2YP CA1 H25 sing N N 60 2YP CA2 H26 sing N N 61 2YP NAD H27 sing N N 62 2YP CAF H28 sing N N 63 2YP CAF H29 sing N N 64 2YP CAF H30 sing N N 65 ALA N CA sing N N 66 ALA N H sing N N 67 ALA N H2 sing N N 68 ALA CA C sing N N 69 ALA CA CB sing N N 70 ALA CA HA sing N N 71 ALA C O doub N N 72 ALA C OXT sing N N 73 ALA CB HB1 sing N N 74 ALA CB HB2 sing N N 75 ALA CB HB3 sing N N 76 ALA OXT HXT sing N N 77 ARG N CA sing N N 78 ARG N H sing N N 79 ARG N H2 sing N N 80 ARG CA C sing N N 81 ARG CA CB sing N N 82 ARG CA HA sing N N 83 ARG C O doub N N 84 ARG C OXT sing N N 85 ARG CB CG sing N N 86 ARG CB HB2 sing N N 87 ARG CB HB3 sing N N 88 ARG CG CD sing N N 89 ARG CG HG2 sing N N 90 ARG CG HG3 sing N N 91 ARG CD NE sing N N 92 ARG CD HD2 sing N N 93 ARG CD HD3 sing N N 94 ARG NE CZ sing N N 95 ARG NE HE sing N N 96 ARG CZ NH1 sing N N 97 ARG CZ NH2 doub N N 98 ARG NH1 HH11 sing N N 99 ARG NH1 HH12 sing N N 100 ARG NH2 HH21 sing N N 101 ARG NH2 HH22 sing N N 102 ARG OXT HXT sing N N 103 ASN N CA sing N N 104 ASN N H sing N N 105 ASN N H2 sing N N 106 ASN CA C sing N N 107 ASN CA CB sing N N 108 ASN CA HA sing N N 109 ASN C O doub N N 110 ASN C OXT sing N N 111 ASN CB CG sing N N 112 ASN CB HB2 sing N N 113 ASN CB HB3 sing N N 114 ASN CG OD1 doub N N 115 ASN CG ND2 sing N N 116 ASN ND2 HD21 sing N N 117 ASN ND2 HD22 sing N N 118 ASN OXT HXT sing N N 119 ASP N CA sing N N 120 ASP N H sing N N 121 ASP N H2 sing N N 122 ASP CA C sing N N 123 ASP CA CB sing N N 124 ASP CA HA sing N N 125 ASP C O doub N N 126 ASP C OXT sing N N 127 ASP CB CG sing N N 128 ASP CB HB2 sing N N 129 ASP CB HB3 sing N N 130 ASP CG OD1 doub N N 131 ASP CG OD2 sing N N 132 ASP OD2 HD2 sing N N 133 ASP OXT HXT sing N N 134 CYS N CA sing N N 135 CYS N H sing N N 136 CYS N H2 sing N N 137 CYS CA C sing N N 138 CYS CA CB sing N N 139 CYS CA HA sing N N 140 CYS C O doub N N 141 CYS C OXT sing N N 142 CYS CB SG sing N N 143 CYS CB HB2 sing N N 144 CYS CB HB3 sing N N 145 CYS SG HG sing N N 146 CYS OXT HXT sing N N 147 GLN N CA sing N N 148 GLN N H sing N N 149 GLN N H2 sing N N 150 GLN CA C sing N N 151 GLN CA CB sing N N 152 GLN CA HA sing N N 153 GLN C O doub N N 154 GLN C OXT sing N N 155 GLN CB CG sing N N 156 GLN CB HB2 sing N N 157 GLN CB HB3 sing N N 158 GLN CG CD sing N N 159 GLN CG HG2 sing N N 160 GLN CG HG3 sing N N 161 GLN CD OE1 doub N N 162 GLN CD NE2 sing N N 163 GLN NE2 HE21 sing N N 164 GLN NE2 HE22 sing N N 165 GLN OXT HXT sing N N 166 GLU N CA sing N N 167 GLU N H sing N N 168 GLU N H2 sing N N 169 GLU CA C sing N N 170 GLU CA CB sing N N 171 GLU CA HA sing N N 172 GLU C O doub N N 173 GLU C OXT sing N N 174 GLU CB CG sing N N 175 GLU CB HB2 sing N N 176 GLU CB HB3 sing N N 177 GLU CG CD sing N N 178 GLU CG HG2 sing N N 179 GLU CG HG3 sing N N 180 GLU CD OE1 doub N N 181 GLU CD OE2 sing N N 182 GLU OE2 HE2 sing N N 183 GLU OXT HXT sing N N 184 GLY N CA sing N N 185 GLY N H sing N N 186 GLY N H2 sing N N 187 GLY CA C sing N N 188 GLY CA HA2 sing N N 189 GLY CA HA3 sing N N 190 GLY C O doub N N 191 GLY C OXT sing N N 192 GLY OXT HXT sing N N 193 HIS N CA sing N N 194 HIS N H sing N N 195 HIS N H2 sing N N 196 HIS CA C sing N N 197 HIS CA CB sing N N 198 HIS CA HA sing N N 199 HIS C O doub N N 200 HIS C OXT sing N N 201 HIS CB CG sing N N 202 HIS CB HB2 sing N N 203 HIS CB HB3 sing N N 204 HIS CG ND1 sing Y N 205 HIS CG CD2 doub Y N 206 HIS ND1 CE1 doub Y N 207 HIS ND1 HD1 sing N N 208 HIS CD2 NE2 sing Y N 209 HIS CD2 HD2 sing N N 210 HIS CE1 NE2 sing Y N 211 HIS CE1 HE1 sing N N 212 HIS NE2 HE2 sing N N 213 HIS OXT HXT sing N N 214 HOH O H1 sing N N 215 HOH O H2 sing N N 216 ILE N CA sing N N 217 ILE N H sing N N 218 ILE N H2 sing N N 219 ILE CA C sing N N 220 ILE CA CB sing N N 221 ILE CA HA sing N N 222 ILE C O doub N N 223 ILE C OXT sing N N 224 ILE CB CG1 sing N N 225 ILE CB CG2 sing N N 226 ILE CB HB sing N N 227 ILE CG1 CD1 sing N N 228 ILE CG1 HG12 sing N N 229 ILE CG1 HG13 sing N N 230 ILE CG2 HG21 sing N N 231 ILE CG2 HG22 sing N N 232 ILE CG2 HG23 sing N N 233 ILE CD1 HD11 sing N N 234 ILE CD1 HD12 sing N N 235 ILE CD1 HD13 sing N N 236 ILE OXT HXT sing N N 237 LEU N CA sing N N 238 LEU N H sing N N 239 LEU N H2 sing N N 240 LEU CA C sing N N 241 LEU CA CB sing N N 242 LEU CA HA sing N N 243 LEU C O doub N N 244 LEU C OXT sing N N 245 LEU CB CG sing N N 246 LEU CB HB2 sing N N 247 LEU CB HB3 sing N N 248 LEU CG CD1 sing N N 249 LEU CG CD2 sing N N 250 LEU CG HG sing N N 251 LEU CD1 HD11 sing N N 252 LEU CD1 HD12 sing N N 253 LEU CD1 HD13 sing N N 254 LEU CD2 HD21 sing N N 255 LEU CD2 HD22 sing N N 256 LEU CD2 HD23 sing N N 257 LEU OXT HXT sing N N 258 LYS N CA sing N N 259 LYS N H sing N N 260 LYS N H2 sing N N 261 LYS CA C sing N N 262 LYS CA CB sing N N 263 LYS CA HA sing N N 264 LYS C O doub N N 265 LYS C OXT sing N N 266 LYS CB CG sing N N 267 LYS CB HB2 sing N N 268 LYS CB HB3 sing N N 269 LYS CG CD sing N N 270 LYS CG HG2 sing N N 271 LYS CG HG3 sing N N 272 LYS CD CE sing N N 273 LYS CD HD2 sing N N 274 LYS CD HD3 sing N N 275 LYS CE NZ sing N N 276 LYS CE HE2 sing N N 277 LYS CE HE3 sing N N 278 LYS NZ HZ1 sing N N 279 LYS NZ HZ2 sing N N 280 LYS NZ HZ3 sing N N 281 LYS OXT HXT sing N N 282 MSE N CA sing N N 283 MSE N H sing N N 284 MSE N H2 sing N N 285 MSE CA C sing N N 286 MSE CA CB sing N N 287 MSE CA HA sing N N 288 MSE C O doub N N 289 MSE C OXT sing N N 290 MSE OXT HXT sing N N 291 MSE CB CG sing N N 292 MSE CB HB2 sing N N 293 MSE CB HB3 sing N N 294 MSE CG SE sing N N 295 MSE CG HG2 sing N N 296 MSE CG HG3 sing N N 297 MSE SE CE sing N N 298 MSE CE HE1 sing N N 299 MSE CE HE2 sing N N 300 MSE CE HE3 sing N N 301 PHE N CA sing N N 302 PHE N H sing N N 303 PHE N H2 sing N N 304 PHE CA C sing N N 305 PHE CA CB sing N N 306 PHE CA HA sing N N 307 PHE C O doub N N 308 PHE C OXT sing N N 309 PHE CB CG sing N N 310 PHE CB HB2 sing N N 311 PHE CB HB3 sing N N 312 PHE CG CD1 doub Y N 313 PHE CG CD2 sing Y N 314 PHE CD1 CE1 sing Y N 315 PHE CD1 HD1 sing N N 316 PHE CD2 CE2 doub Y N 317 PHE CD2 HD2 sing N N 318 PHE CE1 CZ doub Y N 319 PHE CE1 HE1 sing N N 320 PHE CE2 CZ sing Y N 321 PHE CE2 HE2 sing N N 322 PHE CZ HZ sing N N 323 PHE OXT HXT sing N N 324 PRO N CA sing N N 325 PRO N CD sing N N 326 PRO N H sing N N 327 PRO CA C sing N N 328 PRO CA CB sing N N 329 PRO CA HA sing N N 330 PRO C O doub N N 331 PRO C OXT sing N N 332 PRO CB CG sing N N 333 PRO CB HB2 sing N N 334 PRO CB HB3 sing N N 335 PRO CG CD sing N N 336 PRO CG HG2 sing N N 337 PRO CG HG3 sing N N 338 PRO CD HD2 sing N N 339 PRO CD HD3 sing N N 340 PRO OXT HXT sing N N 341 SER N CA sing N N 342 SER N H sing N N 343 SER N H2 sing N N 344 SER CA C sing N N 345 SER CA CB sing N N 346 SER CA HA sing N N 347 SER C O doub N N 348 SER C OXT sing N N 349 SER CB OG sing N N 350 SER CB HB2 sing N N 351 SER CB HB3 sing N N 352 SER OG HG sing N N 353 SER OXT HXT sing N N 354 THR N CA sing N N 355 THR N H sing N N 356 THR N H2 sing N N 357 THR CA C sing N N 358 THR CA CB sing N N 359 THR CA HA sing N N 360 THR C O doub N N 361 THR C OXT sing N N 362 THR CB OG1 sing N N 363 THR CB CG2 sing N N 364 THR CB HB sing N N 365 THR OG1 HG1 sing N N 366 THR CG2 HG21 sing N N 367 THR CG2 HG22 sing N N 368 THR CG2 HG23 sing N N 369 THR OXT HXT sing N N 370 TRP N CA sing N N 371 TRP N H sing N N 372 TRP N H2 sing N N 373 TRP CA C sing N N 374 TRP CA CB sing N N 375 TRP CA HA sing N N 376 TRP C O doub N N 377 TRP C OXT sing N N 378 TRP CB CG sing N N 379 TRP CB HB2 sing N N 380 TRP CB HB3 sing N N 381 TRP CG CD1 doub Y N 382 TRP CG CD2 sing Y N 383 TRP CD1 NE1 sing Y N 384 TRP CD1 HD1 sing N N 385 TRP CD2 CE2 doub Y N 386 TRP CD2 CE3 sing Y N 387 TRP NE1 CE2 sing Y N 388 TRP NE1 HE1 sing N N 389 TRP CE2 CZ2 sing Y N 390 TRP CE3 CZ3 doub Y N 391 TRP CE3 HE3 sing N N 392 TRP CZ2 CH2 doub Y N 393 TRP CZ2 HZ2 sing N N 394 TRP CZ3 CH2 sing Y N 395 TRP CZ3 HZ3 sing N N 396 TRP CH2 HH2 sing N N 397 TRP OXT HXT sing N N 398 TYR N CA sing N N 399 TYR N H sing N N 400 TYR N H2 sing N N 401 TYR CA C sing N N 402 TYR CA CB sing N N 403 TYR CA HA sing N N 404 TYR C O doub N N 405 TYR C OXT sing N N 406 TYR CB CG sing N N 407 TYR CB HB2 sing N N 408 TYR CB HB3 sing N N 409 TYR CG CD1 doub Y N 410 TYR CG CD2 sing Y N 411 TYR CD1 CE1 sing Y N 412 TYR CD1 HD1 sing N N 413 TYR CD2 CE2 doub Y N 414 TYR CD2 HD2 sing N N 415 TYR CE1 CZ doub Y N 416 TYR CE1 HE1 sing N N 417 TYR CE2 CZ sing Y N 418 TYR CE2 HE2 sing N N 419 TYR CZ OH sing N N 420 TYR OH HH sing N N 421 TYR OXT HXT sing N N 422 VAL N CA sing N N 423 VAL N H sing N N 424 VAL N H2 sing N N 425 VAL CA C sing N N 426 VAL CA CB sing N N 427 VAL CA HA sing N N 428 VAL C O doub N N 429 VAL C OXT sing N N 430 VAL CB CG1 sing N N 431 VAL CB CG2 sing N N 432 VAL CB HB sing N N 433 VAL CG1 HG11 sing N N 434 VAL CG1 HG12 sing N N 435 VAL CG1 HG13 sing N N 436 VAL CG2 HG21 sing N N 437 VAL CG2 HG22 sing N N 438 VAL CG2 HG23 sing N N 439 VAL OXT HXT sing N N 440 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4H4J _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 4Q5K _atom_sites.fract_transf_matrix[1][1] 0.020214 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016412 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012481 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NA O S SE # loop_