HEADER OXIDOREDUCTASE 23-APR-14 4Q71 TITLE CRYSTAL STRUCTURE OF BRADYRHIZOBIUM JAPONICUM PROLINE UTILIZATION A TITLE 2 (PUTA) MUTANT D779W COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLINE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.5.99.8, 1.2.1.88; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRADYRHIZOBIUM DIAZOEFFICIENS USDA 110; SOURCE 3 ORGANISM_TAXID: 224911; SOURCE 4 STRAIN: USDA 110; SOURCE 5 GENE: BJ6T_21270, BLR7261, PUTA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKA8H KEYWDS PROLINE UTILIZATION A, PUTA, BETA-ALPHA BARREL, ROSSMANN FOLD, KEYWDS 2 PROLINE DEHYDROGENASE, 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE, FAD KEYWDS 3 BINDING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.J.TANNER,M.LUO,T.A.PEMBERTON REVDAT 3 20-SEP-23 4Q71 1 REMARK SEQADV REVDAT 2 10-SEP-14 4Q71 1 JRNL REVDAT 1 06-AUG-14 4Q71 0 JRNL AUTH B.W.ARENTSON,M.LUO,T.A.PEMBERTON,J.J.TANNER,D.F.BECKER JRNL TITL KINETIC AND STRUCTURAL CHARACTERIZATION OF TUNNEL-PERTURBING JRNL TITL 2 MUTANTS IN BRADYRHIZOBIUM JAPONICUM PROLINE UTILIZATION A. JRNL REF BIOCHEMISTRY V. 53 5150 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 25046425 JRNL DOI 10.1021/BI5007404 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 149169 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 7526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.9114 - 6.8144 0.99 4810 236 0.1852 0.1880 REMARK 3 2 6.8144 - 5.4174 1.00 4770 256 0.2064 0.2120 REMARK 3 3 5.4174 - 4.7351 1.00 4716 272 0.1804 0.1950 REMARK 3 4 4.7351 - 4.3033 1.00 4728 275 0.1705 0.2018 REMARK 3 5 4.3033 - 3.9955 1.00 4722 248 0.1757 0.1979 REMARK 3 6 3.9955 - 3.7603 1.00 4747 257 0.1820 0.2102 REMARK 3 7 3.7603 - 3.5723 1.00 4714 254 0.1951 0.2541 REMARK 3 8 3.5723 - 3.4169 1.00 4701 252 0.2091 0.2528 REMARK 3 9 3.4169 - 3.2855 1.00 4740 243 0.2132 0.2495 REMARK 3 10 3.2855 - 3.1723 1.00 4768 252 0.2111 0.2427 REMARK 3 11 3.1723 - 3.0732 1.00 4707 250 0.2237 0.2452 REMARK 3 12 3.0732 - 2.9854 1.00 4695 255 0.2368 0.2898 REMARK 3 13 2.9854 - 2.9068 1.00 4743 225 0.2325 0.2773 REMARK 3 14 2.9068 - 2.8360 1.00 4746 257 0.2264 0.2766 REMARK 3 15 2.8360 - 2.7715 1.00 4676 268 0.2245 0.2584 REMARK 3 16 2.7715 - 2.7126 0.99 4703 265 0.2293 0.2650 REMARK 3 17 2.7126 - 2.6583 1.00 4707 238 0.2352 0.2871 REMARK 3 18 2.6583 - 2.6082 1.00 4729 228 0.2326 0.2733 REMARK 3 19 2.6082 - 2.5616 1.00 4755 217 0.2269 0.2702 REMARK 3 20 2.5616 - 2.5182 1.00 4727 239 0.2349 0.2806 REMARK 3 21 2.5182 - 2.4776 1.00 4704 264 0.2385 0.2871 REMARK 3 22 2.4776 - 2.4395 1.00 4758 248 0.2405 0.3243 REMARK 3 23 2.4395 - 2.4037 1.00 4666 262 0.2388 0.2928 REMARK 3 24 2.4037 - 2.3698 1.00 4791 240 0.2379 0.3109 REMARK 3 25 2.3698 - 2.3378 1.00 4694 266 0.2279 0.2771 REMARK 3 26 2.3378 - 2.3075 1.00 4739 247 0.2322 0.2702 REMARK 3 27 2.3075 - 2.2786 1.00 4702 256 0.2322 0.2597 REMARK 3 28 2.2786 - 2.2512 1.00 4660 248 0.2390 0.2860 REMARK 3 29 2.2512 - 2.2250 0.99 4726 262 0.2551 0.2939 REMARK 3 30 2.2250 - 2.2000 0.97 4599 246 0.2717 0.3438 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 14836 REMARK 3 ANGLE : 1.102 20210 REMARK 3 CHIRALITY : 0.066 2329 REMARK 3 PLANARITY : 0.006 2645 REMARK 3 DIHEDRAL : 13.976 5357 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND NOT RESNAME FAD REMARK 3 ORIGIN FOR THE GROUP (A): 3.5125 -7.9960 -27.0185 REMARK 3 T TENSOR REMARK 3 T11: 0.1857 T22: 0.1888 REMARK 3 T33: 0.1348 T12: 0.0076 REMARK 3 T13: 0.0718 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 0.4491 L22: 0.9917 REMARK 3 L33: 0.2985 L12: -0.1169 REMARK 3 L13: 0.0577 L23: -0.1565 REMARK 3 S TENSOR REMARK 3 S11: -0.0474 S12: -0.0270 S13: 0.0016 REMARK 3 S21: 0.1252 S22: 0.0524 S23: 0.2011 REMARK 3 S31: -0.0718 S32: 0.0374 S33: -0.0097 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND NOT RESNAME FAD REMARK 3 ORIGIN FOR THE GROUP (A): 3.5794 43.7555 -65.5278 REMARK 3 T TENSOR REMARK 3 T11: 0.1914 T22: 0.2350 REMARK 3 T33: 0.2446 T12: 0.0020 REMARK 3 T13: -0.0919 T23: 0.0617 REMARK 3 L TENSOR REMARK 3 L11: 0.4526 L22: 0.8346 REMARK 3 L33: 0.3339 L12: 0.1135 REMARK 3 L13: 0.0096 L23: -0.1395 REMARK 3 S TENSOR REMARK 3 S11: -0.0498 S12: 0.0973 S13: 0.1080 REMARK 3 S21: -0.1504 S22: 0.0896 S23: 0.2090 REMARK 3 S31: 0.0918 S32: 0.0699 S33: -0.0393 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Q71 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085684. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 149604 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 31.908 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10600 REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.46400 REMARK 200 R SYM FOR SHELL (I) : 0.46400 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3HAZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M AMMONIUM SULFATE, 0.1 M TRIS, PH REMARK 280 7.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 83.44000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 97.65500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 83.44000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 97.65500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 132600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -275.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 56.98825 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -92.66932 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 ARG A 51 REMARK 465 ASP A 52 REMARK 465 ASP A 53 REMARK 465 LEU A 123 REMARK 465 GLY A 124 REMARK 465 LEU A 125 REMARK 465 SER A 126 REMARK 465 ALA A 127 REMARK 465 ARG A 183 REMARK 465 SER A 184 REMARK 465 THR A 536 REMARK 465 GLY A 537 REMARK 465 ASP A 538 REMARK 465 LEU A 539 REMARK 465 LYS A 540 REMARK 465 PRO A 541 REMARK 465 GLY A 989 REMARK 465 GLY A 990 REMARK 465 ASN A 991 REMARK 465 ALA A 992 REMARK 465 ALA A 993 REMARK 465 LEU A 994 REMARK 465 LEU A 995 REMARK 465 ALA A 996 REMARK 465 GLY A 997 REMARK 465 GLU A 998 REMARK 465 GLU A 999 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ARG B 51 REMARK 465 ASP B 52 REMARK 465 ASP B 53 REMARK 465 ARG B 54 REMARK 465 LEU B 123 REMARK 465 GLY B 124 REMARK 465 LEU B 125 REMARK 465 SER B 126 REMARK 465 ALA B 127 REMARK 465 ARG B 183 REMARK 465 SER B 184 REMARK 465 GLY B 185 REMARK 465 THR B 536 REMARK 465 GLY B 537 REMARK 465 ASP B 538 REMARK 465 LEU B 539 REMARK 465 LYS B 540 REMARK 465 PRO B 541 REMARK 465 GLY B 990 REMARK 465 ASN B 991 REMARK 465 ALA B 992 REMARK 465 ALA B 993 REMARK 465 LEU B 994 REMARK 465 LEU B 995 REMARK 465 ALA B 996 REMARK 465 GLY B 997 REMARK 465 GLU B 998 REMARK 465 GLU B 999 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 GLU A 18 CD OE1 OE2 REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 54 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 55 CG CD1 CD2 REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 ARG A 89 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 93 CG CD OE1 NE2 REMARK 470 VAL A 129 CG1 CG2 REMARK 470 GLN A 131 CG CD OE1 NE2 REMARK 470 THR A 135 OG1 CG2 REMARK 470 LYS A 145 CE NZ REMARK 470 ARG A 161 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 ARG A 189 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 210 CG OD1 OD2 REMARK 470 ILE A 219 CD1 REMARK 470 ARG A 330 NE CZ NH1 NH2 REMARK 470 SER A 410 OG REMARK 470 LYS A 431 CE NZ REMARK 470 GLU A 460 CG CD OE1 OE2 REMARK 470 ASN A 464 CG OD1 ND2 REMARK 470 GLN A 493 CD OE1 NE2 REMARK 470 GLU A 510 CG CD OE1 OE2 REMARK 470 ARG A 512 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 596 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 688 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 691 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 715 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 736 CG CD OE1 OE2 REMARK 470 GLU A 758 CG CD OE1 OE2 REMARK 470 GLU A 810 CG CD OE1 OE2 REMARK 470 GLU A 838 CG CD OE1 OE2 REMARK 470 GLN A 841 CG CD OE1 NE2 REMARK 470 ARG A 849 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 855 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 864 CG CD OE1 OE2 REMARK 470 GLU A 883 CG CD OE1 OE2 REMARK 470 ARG A 896 NE CZ NH1 NH2 REMARK 470 GLU A 898 CD OE1 OE2 REMARK 470 ARG A 902 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 909 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 18 CD OE1 OE2 REMARK 470 ARG B 22 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 55 CG CD1 CD2 REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 ARG B 89 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 93 CG CD OE1 NE2 REMARK 470 VAL B 129 CG1 CG2 REMARK 470 GLN B 131 CG CD OE1 NE2 REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 ARG B 161 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 181 NZ REMARK 470 GLN B 186 OE1 NE2 REMARK 470 LYS B 187 CG CD CE NZ REMARK 470 ARG B 189 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 210 CG OD1 OD2 REMARK 470 ILE B 219 CD1 REMARK 470 LYS B 221 CG CD CE NZ REMARK 470 ARG B 330 NE CZ NH1 NH2 REMARK 470 LYS B 335 NZ REMARK 470 SER B 410 OG REMARK 470 LYS B 431 CE NZ REMARK 470 GLU B 460 CG CD OE1 OE2 REMARK 470 GLN B 493 CD OE1 NE2 REMARK 470 GLU B 510 CG CD OE1 OE2 REMARK 470 ARG B 512 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 533 CE NZ REMARK 470 ARG B 596 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 625 CD CE NZ REMARK 470 GLU B 684 CG CD OE1 OE2 REMARK 470 ARG B 688 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 691 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 715 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 736 CG CD OE1 OE2 REMARK 470 GLU B 758 CG CD OE1 OE2 REMARK 470 GLU B 810 CG CD OE1 OE2 REMARK 470 ASP B 826 CG OD1 OD2 REMARK 470 GLU B 838 CG CD OE1 OE2 REMARK 470 GLN B 841 CG CD OE1 NE2 REMARK 470 ARG B 849 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 855 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 864 CG CD OE1 OE2 REMARK 470 GLU B 883 CD OE1 OE2 REMARK 470 ARG B 896 NE CZ NH1 NH2 REMARK 470 GLU B 898 CD OE1 OE2 REMARK 470 ARG B 902 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 934 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 9 40.78 -152.06 REMARK 500 LEU A 55 113.36 -172.28 REMARK 500 LYS A 221 -8.12 -58.10 REMARK 500 ASP A 230 50.00 -86.18 REMARK 500 GLU A 280 -142.68 -116.28 REMARK 500 VAL A 490 -52.53 64.44 REMARK 500 GLN A 790 46.64 -94.71 REMARK 500 LEU A 914 -77.88 -92.54 REMARK 500 THR B 9 41.03 -150.63 REMARK 500 GLU B 280 -143.38 -114.39 REMARK 500 GLU B 408 5.81 58.76 REMARK 500 VAL B 490 -52.97 65.48 REMARK 500 ASP B 713 -168.11 -79.08 REMARK 500 GLN B 790 48.97 -93.30 REMARK 500 LEU B 914 -78.45 -95.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1005 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Q72 RELATED DB: PDB REMARK 900 RELATED ID: 4Q73 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 IT APPEARS THAT B. JAPONICUM STRAIN USDA 110 HAS BEEN RECLASSIFIED REMARK 999 AS BRADYRHIZOBIUM DIAZOEFFICIENS. SEE ALSO INT J SYST EVOL REMARK 999 MICROBIOL. 2013 SEP;63(PT 9):3342-51. DOI: 10.1099/IJS.0.049130-0. REMARK 999 EPUB 2013 MAR 15. POLYPHASIC EVIDENCE SUPPORTING THE REMARK 999 RECLASSIFICATION OF BRADYRHIZOBIUM JAPONICUM GROUP IA STRAINS AS REMARK 999 BRADYRHIZOBIUM DIAZOEFFICIENS SP. NOV. PMID: 23504968 DBREF 4Q71 A 1 999 UNP Q89E26 Q89E26_BRADU 1 999 DBREF 4Q71 B 1 999 UNP Q89E26 Q89E26_BRADU 1 999 SEQADV 4Q71 GLY A -1 UNP Q89E26 EXPRESSION TAG SEQADV 4Q71 HIS A 0 UNP Q89E26 EXPRESSION TAG SEQADV 4Q71 TRP A 779 UNP Q89E26 ASP 779 ENGINEERED MUTATION SEQADV 4Q71 GLY B -1 UNP Q89E26 EXPRESSION TAG SEQADV 4Q71 HIS B 0 UNP Q89E26 EXPRESSION TAG SEQADV 4Q71 TRP B 779 UNP Q89E26 ASP 779 ENGINEERED MUTATION SEQRES 1 A 1001 GLY HIS MET PRO ASN ILE PRO PRO PRO PHE THR ALA PRO SEQRES 2 A 1001 TYR ALA PRO ASP ASP ALA GLU ILE ALA ALA ARG LEU LEU SEQRES 3 A 1001 PRO ALA SER HIS LEU SER PRO PRO GLN GLU ALA ARG ILE SEQRES 4 A 1001 HIS ARG THR ALA THR ARG LEU ILE GLU ALA ILE ARG LYS SEQRES 5 A 1001 ARG ASP ASP ARG LEU GLY GLY VAL GLU ASP MET LEU ARG SEQRES 6 A 1001 GLU PHE ALA LEU SER THR LYS GLU GLY LEU ALA LEU MET SEQRES 7 A 1001 VAL LEU ALA GLU ALA LEU LEU ARG VAL PRO ASP ALA ARG SEQRES 8 A 1001 THR ALA ASP GLN PHE ILE GLU ASP LYS LEU GLY GLU GLY SEQRES 9 A 1001 ASP PHE ILE HIS HIS GLU THR LYS SER THR ALA PHE LEU SEQRES 10 A 1001 VAL ASN ALA SER ALA TRP ALA LEU GLY LEU SER ALA ARG SEQRES 11 A 1001 VAL ILE GLN PRO GLY GLU THR PRO ASP GLY THR ILE GLY SEQRES 12 A 1001 ARG LEU VAL LYS ARG LEU GLY ALA PRO ALA VAL ARG THR SEQRES 13 A 1001 ALA THR ARG GLN ALA MET ARG LEU MET GLY ASN HIS PHE SEQRES 14 A 1001 VAL LEU GLY GLU THR ILE GLU GLN ALA LEU GLU ARG GLY SEQRES 15 A 1001 LYS PRO ARG SER GLY GLN LYS THR ARG TYR SER PHE ASP SEQRES 16 A 1001 MET LEU GLY GLU GLY ALA ARG THR ALA ALA ASP ALA ARG SEQRES 17 A 1001 ARG TYR PHE ASP ALA TYR ALA SER ALA ILE GLU THR ILE SEQRES 18 A 1001 GLY LYS ALA ALA GLY ASN HIS ALA LEU PRO ASP ARG PRO SEQRES 19 A 1001 GLY ILE SER VAL LYS LEU SER ALA LEU HIS PRO ARG PHE SEQRES 20 A 1001 GLU ALA ILE SER ARG ALA ARG VAL MET VAL GLU LEU VAL SEQRES 21 A 1001 PRO GLN LEU LEU ASP LEU ALA GLN ARG ALA LYS ALA HIS SEQRES 22 A 1001 ASP LEU ASN PHE THR VAL ASP ALA GLU GLU ALA ASP ARG SEQRES 23 A 1001 LEU GLU LEU SER LEU ASP VAL ILE ALA ALA THR LEU ALA SEQRES 24 A 1001 ASP PRO SER LEU LYS GLY TRP ASP GLY PHE GLY LEU ALA SEQRES 25 A 1001 ILE GLN ALA TYR GLN LYS ARG ALA SER ALA VAL ILE ASP SEQRES 26 A 1001 TYR VAL ASP ALA LEU ALA ARG ALA HIS ASP ARG LYS LEU SEQRES 27 A 1001 MET VAL ARG LEU VAL LYS GLY ALA TYR TRP ASP THR GLU SEQRES 28 A 1001 ILE LYS ARG ALA GLN GLU ARG GLY LEU ASP GLY TYR PRO SEQRES 29 A 1001 VAL PHE THR ARG LYS ALA MET THR ASP LEU ASN TYR VAL SEQRES 30 A 1001 ALA CYS ALA SER LYS LEU LEU ALA LEU ARG PRO ARG ILE SEQRES 31 A 1001 PHE PRO GLN PHE ALA THR HIS ASN ALA LEU THR VAL ALA SEQRES 32 A 1001 THR VAL LEU GLU MET ALA GLU GLY SER SER GLY PHE GLU SEQRES 33 A 1001 PHE GLN ARG LEU HIS GLY MET GLY GLU ALA LEU TYR GLU SEQRES 34 A 1001 GLN LEU ALA LYS ASP HIS ALA ASP ILE ALA TYR ARG THR SEQRES 35 A 1001 TYR ALA PRO VAL GLY SER HIS ARG ASP LEU LEU ALA TYR SEQRES 36 A 1001 LEU VAL ARG ARG LEU LEU GLU ASN GLY ALA ASN SER SER SEQRES 37 A 1001 PHE VAL ALA GLN ALA ALA ASP TYR ARG VAL PRO VAL PRO SEQRES 38 A 1001 ALA LEU LEU GLN ARG PRO ALA ASP ALA ILE VAL ARG PRO SEQRES 39 A 1001 GLN ALA ALA ALA HIS PRO ARG ILE PRO LEU PRO CYS ASP SEQRES 40 A 1001 LEU PHE ALA PRO GLU ARG ARG ASN SER ARG GLY VAL GLU SEQRES 41 A 1001 PHE GLY ALA ARG THR ALA LEU ASP GLN LEU LEU THR ASP SEQRES 42 A 1001 VAL LYS ALA GLU THR GLY ASP LEU LYS PRO ILE ALA ASP SEQRES 43 A 1001 ALA THR PRO ASP GLN ALA HIS ALA ALA VAL ALA ALA ALA SEQRES 44 A 1001 ARG ALA GLY PHE ALA GLY TRP SER ARG THR PRO ALA GLY SEQRES 45 A 1001 ILE ARG ALA ALA ALA LEU GLU GLN ALA ALA HIS LEU LEU SEQRES 46 A 1001 GLU SER ARG SER ALA HIS PHE ILE ALA LEU LEU GLN ARG SEQRES 47 A 1001 GLU GLY GLY LYS THR LEU ASP ASP ALA LEU SER GLU LEU SEQRES 48 A 1001 ARG GLU ALA ALA ASP PHE CYS ARG TYR TYR ALA ALA GLN SEQRES 49 A 1001 GLY ARG LYS LEU PHE GLY SER GLU THR ALA MET PRO GLY SEQRES 50 A 1001 PRO THR GLY GLU SER ASN ALA LEU THR MET ARG GLY ARG SEQRES 51 A 1001 GLY VAL PHE VAL ALA ILE SER PRO TRP ASN PHE PRO LEU SEQRES 52 A 1001 ALA ILE PHE LEU GLY GLN VAL THR ALA ALA LEU MET ALA SEQRES 53 A 1001 GLY ASN SER VAL VAL ALA LYS PRO ALA GLU GLN THR PRO SEQRES 54 A 1001 ARG ILE ALA ARG GLU ALA VAL ALA LEU LEU HIS GLU ALA SEQRES 55 A 1001 GLY ILE PRO LYS SER ALA LEU TYR LEU VAL THR GLY ASP SEQRES 56 A 1001 GLY ARG ILE GLY ALA ALA LEU THR ALA HIS PRO ASP ILE SEQRES 57 A 1001 ALA GLY VAL VAL PHE THR GLY SER THR GLU VAL ALA ARG SEQRES 58 A 1001 SER ILE ASN ARG ALA LEU ALA ALA LYS ASP GLY PRO ILE SEQRES 59 A 1001 VAL PRO LEU ILE ALA GLU THR GLY GLY ILE ASN ALA MET SEQRES 60 A 1001 ILE ALA ASP ALA THR ALA LEU PRO GLU GLN VAL ALA ASP SEQRES 61 A 1001 TRP VAL VAL THR SER ALA PHE ARG SER ALA GLY GLN ARG SEQRES 62 A 1001 CYS SER ALA LEU ARG LEU LEU PHE VAL GLN GLU ASP VAL SEQRES 63 A 1001 ALA ASP ARG MET ILE GLU MET VAL ALA GLY ALA ALA ARG SEQRES 64 A 1001 GLU LEU LYS ILE GLY ASP PRO SER ASP VAL ALA THR HIS SEQRES 65 A 1001 VAL GLY PRO VAL ILE ASP VAL GLU ALA LYS GLN ARG LEU SEQRES 66 A 1001 ASP ALA HIS ILE ALA ARG MET LYS THR GLU ALA ARG LEU SEQRES 67 A 1001 HIS PHE ALA GLY PRO ALA PRO GLU GLY CYS PHE VAL ALA SEQRES 68 A 1001 PRO HIS ILE PHE GLU LEU THR GLU ALA GLY GLN LEU THR SEQRES 69 A 1001 GLU GLU VAL PHE GLY PRO ILE LEU HIS VAL VAL ARG TYR SEQRES 70 A 1001 ARG PRO GLU ASN LEU GLU ARG VAL LEU ARG ALA ILE GLU SEQRES 71 A 1001 ARG THR GLY TYR GLY LEU THR LEU GLY VAL HIS SER ARG SEQRES 72 A 1001 ILE ASP ASP SER ILE GLU ALA ILE ILE ASP ARG VAL GLN SEQRES 73 A 1001 VAL GLY ASN ILE TYR VAL ASN ARG ASN MET ILE GLY ALA SEQRES 74 A 1001 VAL VAL GLY VAL GLN PRO PHE GLY GLY ASN GLY LEU SER SEQRES 75 A 1001 GLY THR GLY PRO LYS ALA GLY GLY PRO HIS TYR LEU ALA SEQRES 76 A 1001 ARG PHE ALA THR GLU GLN THR VAL THR ILE ASN THR ALA SEQRES 77 A 1001 ALA ALA GLY GLY ASN ALA ALA LEU LEU ALA GLY GLU GLU SEQRES 1 B 1001 GLY HIS MET PRO ASN ILE PRO PRO PRO PHE THR ALA PRO SEQRES 2 B 1001 TYR ALA PRO ASP ASP ALA GLU ILE ALA ALA ARG LEU LEU SEQRES 3 B 1001 PRO ALA SER HIS LEU SER PRO PRO GLN GLU ALA ARG ILE SEQRES 4 B 1001 HIS ARG THR ALA THR ARG LEU ILE GLU ALA ILE ARG LYS SEQRES 5 B 1001 ARG ASP ASP ARG LEU GLY GLY VAL GLU ASP MET LEU ARG SEQRES 6 B 1001 GLU PHE ALA LEU SER THR LYS GLU GLY LEU ALA LEU MET SEQRES 7 B 1001 VAL LEU ALA GLU ALA LEU LEU ARG VAL PRO ASP ALA ARG SEQRES 8 B 1001 THR ALA ASP GLN PHE ILE GLU ASP LYS LEU GLY GLU GLY SEQRES 9 B 1001 ASP PHE ILE HIS HIS GLU THR LYS SER THR ALA PHE LEU SEQRES 10 B 1001 VAL ASN ALA SER ALA TRP ALA LEU GLY LEU SER ALA ARG SEQRES 11 B 1001 VAL ILE GLN PRO GLY GLU THR PRO ASP GLY THR ILE GLY SEQRES 12 B 1001 ARG LEU VAL LYS ARG LEU GLY ALA PRO ALA VAL ARG THR SEQRES 13 B 1001 ALA THR ARG GLN ALA MET ARG LEU MET GLY ASN HIS PHE SEQRES 14 B 1001 VAL LEU GLY GLU THR ILE GLU GLN ALA LEU GLU ARG GLY SEQRES 15 B 1001 LYS PRO ARG SER GLY GLN LYS THR ARG TYR SER PHE ASP SEQRES 16 B 1001 MET LEU GLY GLU GLY ALA ARG THR ALA ALA ASP ALA ARG SEQRES 17 B 1001 ARG TYR PHE ASP ALA TYR ALA SER ALA ILE GLU THR ILE SEQRES 18 B 1001 GLY LYS ALA ALA GLY ASN HIS ALA LEU PRO ASP ARG PRO SEQRES 19 B 1001 GLY ILE SER VAL LYS LEU SER ALA LEU HIS PRO ARG PHE SEQRES 20 B 1001 GLU ALA ILE SER ARG ALA ARG VAL MET VAL GLU LEU VAL SEQRES 21 B 1001 PRO GLN LEU LEU ASP LEU ALA GLN ARG ALA LYS ALA HIS SEQRES 22 B 1001 ASP LEU ASN PHE THR VAL ASP ALA GLU GLU ALA ASP ARG SEQRES 23 B 1001 LEU GLU LEU SER LEU ASP VAL ILE ALA ALA THR LEU ALA SEQRES 24 B 1001 ASP PRO SER LEU LYS GLY TRP ASP GLY PHE GLY LEU ALA SEQRES 25 B 1001 ILE GLN ALA TYR GLN LYS ARG ALA SER ALA VAL ILE ASP SEQRES 26 B 1001 TYR VAL ASP ALA LEU ALA ARG ALA HIS ASP ARG LYS LEU SEQRES 27 B 1001 MET VAL ARG LEU VAL LYS GLY ALA TYR TRP ASP THR GLU SEQRES 28 B 1001 ILE LYS ARG ALA GLN GLU ARG GLY LEU ASP GLY TYR PRO SEQRES 29 B 1001 VAL PHE THR ARG LYS ALA MET THR ASP LEU ASN TYR VAL SEQRES 30 B 1001 ALA CYS ALA SER LYS LEU LEU ALA LEU ARG PRO ARG ILE SEQRES 31 B 1001 PHE PRO GLN PHE ALA THR HIS ASN ALA LEU THR VAL ALA SEQRES 32 B 1001 THR VAL LEU GLU MET ALA GLU GLY SER SER GLY PHE GLU SEQRES 33 B 1001 PHE GLN ARG LEU HIS GLY MET GLY GLU ALA LEU TYR GLU SEQRES 34 B 1001 GLN LEU ALA LYS ASP HIS ALA ASP ILE ALA TYR ARG THR SEQRES 35 B 1001 TYR ALA PRO VAL GLY SER HIS ARG ASP LEU LEU ALA TYR SEQRES 36 B 1001 LEU VAL ARG ARG LEU LEU GLU ASN GLY ALA ASN SER SER SEQRES 37 B 1001 PHE VAL ALA GLN ALA ALA ASP TYR ARG VAL PRO VAL PRO SEQRES 38 B 1001 ALA LEU LEU GLN ARG PRO ALA ASP ALA ILE VAL ARG PRO SEQRES 39 B 1001 GLN ALA ALA ALA HIS PRO ARG ILE PRO LEU PRO CYS ASP SEQRES 40 B 1001 LEU PHE ALA PRO GLU ARG ARG ASN SER ARG GLY VAL GLU SEQRES 41 B 1001 PHE GLY ALA ARG THR ALA LEU ASP GLN LEU LEU THR ASP SEQRES 42 B 1001 VAL LYS ALA GLU THR GLY ASP LEU LYS PRO ILE ALA ASP SEQRES 43 B 1001 ALA THR PRO ASP GLN ALA HIS ALA ALA VAL ALA ALA ALA SEQRES 44 B 1001 ARG ALA GLY PHE ALA GLY TRP SER ARG THR PRO ALA GLY SEQRES 45 B 1001 ILE ARG ALA ALA ALA LEU GLU GLN ALA ALA HIS LEU LEU SEQRES 46 B 1001 GLU SER ARG SER ALA HIS PHE ILE ALA LEU LEU GLN ARG SEQRES 47 B 1001 GLU GLY GLY LYS THR LEU ASP ASP ALA LEU SER GLU LEU SEQRES 48 B 1001 ARG GLU ALA ALA ASP PHE CYS ARG TYR TYR ALA ALA GLN SEQRES 49 B 1001 GLY ARG LYS LEU PHE GLY SER GLU THR ALA MET PRO GLY SEQRES 50 B 1001 PRO THR GLY GLU SER ASN ALA LEU THR MET ARG GLY ARG SEQRES 51 B 1001 GLY VAL PHE VAL ALA ILE SER PRO TRP ASN PHE PRO LEU SEQRES 52 B 1001 ALA ILE PHE LEU GLY GLN VAL THR ALA ALA LEU MET ALA SEQRES 53 B 1001 GLY ASN SER VAL VAL ALA LYS PRO ALA GLU GLN THR PRO SEQRES 54 B 1001 ARG ILE ALA ARG GLU ALA VAL ALA LEU LEU HIS GLU ALA SEQRES 55 B 1001 GLY ILE PRO LYS SER ALA LEU TYR LEU VAL THR GLY ASP SEQRES 56 B 1001 GLY ARG ILE GLY ALA ALA LEU THR ALA HIS PRO ASP ILE SEQRES 57 B 1001 ALA GLY VAL VAL PHE THR GLY SER THR GLU VAL ALA ARG SEQRES 58 B 1001 SER ILE ASN ARG ALA LEU ALA ALA LYS ASP GLY PRO ILE SEQRES 59 B 1001 VAL PRO LEU ILE ALA GLU THR GLY GLY ILE ASN ALA MET SEQRES 60 B 1001 ILE ALA ASP ALA THR ALA LEU PRO GLU GLN VAL ALA ASP SEQRES 61 B 1001 TRP VAL VAL THR SER ALA PHE ARG SER ALA GLY GLN ARG SEQRES 62 B 1001 CYS SER ALA LEU ARG LEU LEU PHE VAL GLN GLU ASP VAL SEQRES 63 B 1001 ALA ASP ARG MET ILE GLU MET VAL ALA GLY ALA ALA ARG SEQRES 64 B 1001 GLU LEU LYS ILE GLY ASP PRO SER ASP VAL ALA THR HIS SEQRES 65 B 1001 VAL GLY PRO VAL ILE ASP VAL GLU ALA LYS GLN ARG LEU SEQRES 66 B 1001 ASP ALA HIS ILE ALA ARG MET LYS THR GLU ALA ARG LEU SEQRES 67 B 1001 HIS PHE ALA GLY PRO ALA PRO GLU GLY CYS PHE VAL ALA SEQRES 68 B 1001 PRO HIS ILE PHE GLU LEU THR GLU ALA GLY GLN LEU THR SEQRES 69 B 1001 GLU GLU VAL PHE GLY PRO ILE LEU HIS VAL VAL ARG TYR SEQRES 70 B 1001 ARG PRO GLU ASN LEU GLU ARG VAL LEU ARG ALA ILE GLU SEQRES 71 B 1001 ARG THR GLY TYR GLY LEU THR LEU GLY VAL HIS SER ARG SEQRES 72 B 1001 ILE ASP ASP SER ILE GLU ALA ILE ILE ASP ARG VAL GLN SEQRES 73 B 1001 VAL GLY ASN ILE TYR VAL ASN ARG ASN MET ILE GLY ALA SEQRES 74 B 1001 VAL VAL GLY VAL GLN PRO PHE GLY GLY ASN GLY LEU SER SEQRES 75 B 1001 GLY THR GLY PRO LYS ALA GLY GLY PRO HIS TYR LEU ALA SEQRES 76 B 1001 ARG PHE ALA THR GLU GLN THR VAL THR ILE ASN THR ALA SEQRES 77 B 1001 ALA ALA GLY GLY ASN ALA ALA LEU LEU ALA GLY GLU GLU HET FAD A2001 53 HET SO4 A2002 5 HET SO4 A2003 5 HET SO4 A2004 5 HET GOL A2005 6 HET GOL A2006 6 HET GOL A2007 6 HET FAD B1001 53 HET SO4 B1002 5 HET SO4 B1003 5 HET SO4 B1004 5 HET GOL B1005 6 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 SO4 6(O4 S 2-) FORMUL 7 GOL 4(C3 H8 O3) FORMUL 15 HOH *531(H2 O) HELIX 1 1 ASP A 15 SER A 27 1 13 HELIX 2 2 SER A 30 ARG A 49 1 20 HELIX 3 3 GLY A 57 PHE A 65 1 9 HELIX 4 4 SER A 68 ARG A 84 1 17 HELIX 5 5 ASP A 87 LYS A 98 1 12 HELIX 6 6 ASP A 103 LEU A 115 1 13 HELIX 7 7 VAL A 116 TRP A 121 5 6 HELIX 8 8 ASP A 137 GLY A 148 1 12 HELIX 9 9 GLY A 148 PHE A 167 1 20 HELIX 10 10 THR A 172 GLY A 180 1 9 HELIX 11 11 THR A 201 LYS A 221 1 21 HELIX 12 12 LYS A 237 HIS A 242 1 6 HELIX 13 13 GLU A 246 ILE A 248 5 3 HELIX 14 14 SER A 249 ALA A 270 1 22 HELIX 15 15 GLU A 281 ASP A 283 5 3 HELIX 16 16 ARG A 284 ASP A 298 1 15 HELIX 17 17 PRO A 299 LYS A 302 5 4 HELIX 18 18 ARG A 317 HIS A 332 1 16 HELIX 19 19 TYR A 345 ARG A 356 1 12 HELIX 20 20 ARG A 366 ALA A 383 1 18 HELIX 21 21 ASN A 396 GLU A 408 1 13 HELIX 22 22 GLY A 422 HIS A 433 1 12 HELIX 23 23 ASP A 449 ALA A 463 1 15 HELIX 24 24 SER A 466 ALA A 472 1 7 HELIX 25 25 PRO A 477 LEU A 482 1 6 HELIX 26 26 ARG A 484 VAL A 490 1 7 HELIX 27 27 ARG A 491 ALA A 495 5 5 HELIX 28 28 LEU A 502 LEU A 506 5 5 HELIX 29 29 ALA A 521 ALA A 534 1 14 HELIX 30 30 THR A 546 THR A 567 1 22 HELIX 31 31 PRO A 568 ARG A 586 1 19 HELIX 32 32 ARG A 586 GLU A 597 1 12 HELIX 33 33 THR A 601 GLY A 628 1 28 HELIX 34 34 LEU A 661 ALA A 674 1 14 HELIX 35 35 THR A 686 GLY A 701 1 16 HELIX 36 36 PRO A 703 SER A 705 5 3 HELIX 37 37 ASP A 713 HIS A 723 1 11 HELIX 38 38 SER A 734 LYS A 748 1 15 HELIX 39 39 LEU A 772 ARG A 786 1 15 HELIX 40 40 SER A 787 GLN A 790 5 4 HELIX 41 41 GLU A 802 GLU A 818 1 17 HELIX 42 42 ASP A 836 ALA A 854 1 19 HELIX 43 43 GLU A 877 LEU A 881 5 5 HELIX 44 44 ARG A 896 GLU A 898 5 3 HELIX 45 45 ASN A 899 THR A 910 1 12 HELIX 46 46 ILE A 922 VAL A 933 1 12 HELIX 47 47 ASN A 957 GLY A 961 5 5 HELIX 48 48 TYR A 971 ARG A 974 5 4 HELIX 49 49 ASP B 15 SER B 27 1 13 HELIX 50 50 SER B 30 ARG B 49 1 20 HELIX 51 51 GLY B 57 PHE B 65 1 9 HELIX 52 52 SER B 68 ARG B 84 1 17 HELIX 53 53 ASP B 87 LYS B 98 1 12 HELIX 54 54 ASP B 103 PHE B 114 1 12 HELIX 55 55 LEU B 115 VAL B 116 5 2 HELIX 56 56 ASN B 117 TRP B 121 5 5 HELIX 57 57 ASP B 137 GLY B 148 1 12 HELIX 58 58 GLY B 148 PHE B 167 1 20 HELIX 59 59 THR B 172 GLY B 180 1 9 HELIX 60 60 THR B 201 LYS B 221 1 21 HELIX 61 61 LYS B 237 HIS B 242 1 6 HELIX 62 62 GLU B 246 ILE B 248 5 3 HELIX 63 63 SER B 249 ALA B 270 1 22 HELIX 64 64 GLU B 281 ASP B 283 5 3 HELIX 65 65 ARG B 284 ASP B 298 1 15 HELIX 66 66 PRO B 299 LYS B 302 5 4 HELIX 67 67 ARG B 317 HIS B 332 1 16 HELIX 68 68 TYR B 345 ARG B 356 1 12 HELIX 69 69 ARG B 366 ALA B 383 1 18 HELIX 70 70 ASN B 396 GLU B 408 1 13 HELIX 71 71 GLY B 422 HIS B 433 1 12 HELIX 72 72 ASP B 449 ALA B 463 1 15 HELIX 73 73 SER B 466 ALA B 472 1 7 HELIX 74 74 PRO B 477 LEU B 482 1 6 HELIX 75 75 ARG B 484 VAL B 490 1 7 HELIX 76 76 ARG B 491 ALA B 495 5 5 HELIX 77 77 LEU B 502 LEU B 506 5 5 HELIX 78 78 ALA B 521 ALA B 534 1 14 HELIX 79 79 THR B 546 THR B 567 1 22 HELIX 80 80 PRO B 568 ARG B 586 1 19 HELIX 81 81 ARG B 586 GLU B 597 1 12 HELIX 82 82 THR B 601 GLY B 628 1 28 HELIX 83 83 LEU B 661 ALA B 674 1 14 HELIX 84 84 THR B 686 GLY B 701 1 16 HELIX 85 85 PRO B 703 SER B 705 5 3 HELIX 86 86 ASP B 713 HIS B 723 1 11 HELIX 87 87 SER B 734 LYS B 748 1 15 HELIX 88 88 LEU B 772 ARG B 786 1 15 HELIX 89 89 SER B 787 GLN B 790 5 4 HELIX 90 90 GLU B 802 GLU B 818 1 17 HELIX 91 91 ASP B 836 ALA B 854 1 19 HELIX 92 92 GLU B 877 LEU B 881 5 5 HELIX 93 93 ARG B 896 GLU B 898 5 3 HELIX 94 94 ASN B 899 THR B 910 1 12 HELIX 95 95 ILE B 922 VAL B 933 1 12 HELIX 96 96 ASN B 957 GLY B 961 5 5 HELIX 97 97 HIS B 970 PHE B 975 1 6 SHEET 1 A10 VAL A 168 GLY A 170 0 SHEET 2 A10 TYR A 438 SER A 446 1 O PRO A 443 N VAL A 168 SHEET 3 A10 GLU A 414 LEU A 418 1 N PHE A 415 O ARG A 439 SHEET 4 A10 ILE A 388 ALA A 393 1 N PHE A 392 O GLU A 414 SHEET 5 A10 LEU A 336 VAL A 341 1 N LEU A 340 O GLN A 391 SHEET 6 A10 PHE A 307 GLN A 312 1 N ILE A 311 O ARG A 339 SHEET 7 A10 ASN A 274 VAL A 277 1 N VAL A 277 O ALA A 310 SHEET 8 A10 GLY A 233 VAL A 236 1 N VAL A 236 O THR A 276 SHEET 9 A10 SER A 191 MET A 194 1 N PHE A 192 O SER A 235 SHEET 10 A10 TYR A 438 SER A 446 1 O ALA A 442 N SER A 191 SHEET 1 B10 THR A 631 ALA A 632 0 SHEET 2 B10 GLU A 639 GLY A 647 -1 O LEU A 643 N THR A 631 SHEET 3 B10 ALA A 976 ASN A 984 -1 O THR A 977 N ARG A 646 SHEET 4 B10 ASN B 937 VAL B 940 1 O VAL B 940 N THR A 982 SHEET 5 B10 THR B 915 HIS B 919 1 N LEU B 916 O TYR B 939 SHEET 6 B10 ASN B 763 ALA B 767 1 N ILE B 766 O HIS B 919 SHEET 7 B10 LEU B 795 GLN B 801 1 O PHE B 799 N MET B 765 SHEET 8 B10 ILE B 889 TYR B 895 1 O VAL B 893 N LEU B 798 SHEET 9 B10 HIS B 871 GLU B 874 1 N PHE B 873 O VAL B 892 SHEET 10 B10 ARG B 855 ALA B 859 -1 N ARG B 855 O GLU B 874 SHEET 1 C 5 LEU A 707 LEU A 709 0 SHEET 2 C 5 SER A 677 LYS A 681 1 N ALA A 680 O TYR A 708 SHEET 3 C 5 VAL A 650 ILE A 654 1 N ALA A 653 O LYS A 681 SHEET 4 C 5 GLY A 728 THR A 732 1 O VAL A 730 N ILE A 654 SHEET 5 C 5 LEU A 755 GLU A 758 1 O ILE A 756 N PHE A 731 SHEET 1 D10 ARG A 855 ALA A 859 0 SHEET 2 D10 HIS A 871 GLU A 874 -1 O GLU A 874 N ARG A 855 SHEET 3 D10 ILE A 889 TYR A 895 1 O LEU A 890 N HIS A 871 SHEET 4 D10 LEU A 795 GLN A 801 1 N LEU A 798 O VAL A 893 SHEET 5 D10 ASN A 763 ALA A 767 1 N MET A 765 O PHE A 799 SHEET 6 D10 THR A 915 HIS A 919 1 O HIS A 919 N ILE A 766 SHEET 7 D10 ASN A 937 VAL A 940 1 O TYR A 939 N LEU A 916 SHEET 8 D10 ALA B 976 ASN B 984 1 O THR B 982 N VAL A 940 SHEET 9 D10 GLU B 639 GLY B 647 -1 N ARG B 646 O THR B 977 SHEET 10 D10 THR B 631 ALA B 632 -1 N THR B 631 O LEU B 643 SHEET 1 E10 VAL B 168 GLY B 170 0 SHEET 2 E10 TYR B 438 SER B 446 1 O PRO B 443 N VAL B 168 SHEET 3 E10 GLU B 414 LEU B 418 1 N PHE B 415 O ARG B 439 SHEET 4 E10 ILE B 388 ALA B 393 1 N PHE B 392 O GLU B 414 SHEET 5 E10 LEU B 336 VAL B 341 1 N LEU B 340 O GLN B 391 SHEET 6 E10 PHE B 307 GLN B 312 1 N ILE B 311 O VAL B 341 SHEET 7 E10 ASN B 274 VAL B 277 1 N VAL B 277 O GLY B 308 SHEET 8 E10 GLY B 233 VAL B 236 1 N VAL B 236 O THR B 276 SHEET 9 E10 SER B 191 MET B 194 1 N PHE B 192 O GLY B 233 SHEET 10 E10 TYR B 438 SER B 446 1 O ALA B 442 N ASP B 193 SHEET 1 F 5 LEU B 707 LEU B 709 0 SHEET 2 F 5 SER B 677 LYS B 681 1 N ALA B 680 O TYR B 708 SHEET 3 F 5 VAL B 650 ILE B 654 1 N ALA B 653 O LYS B 681 SHEET 4 F 5 GLY B 728 THR B 732 1 O VAL B 730 N ILE B 654 SHEET 5 F 5 LEU B 755 GLU B 758 1 O ILE B 756 N PHE B 731 CISPEP 1 LEU A 228 PRO A 229 0 10.64 CISPEP 2 ARG A 385 PRO A 386 0 4.95 CISPEP 3 ALA A 508 PRO A 509 0 3.88 CISPEP 4 GLY A 963 PRO A 964 0 -5.16 CISPEP 5 LEU B 228 PRO B 229 0 6.91 CISPEP 6 ARG B 385 PRO B 386 0 4.76 CISPEP 7 ALA B 508 PRO B 509 0 4.91 CISPEP 8 GLY B 963 PRO B 964 0 -3.87 SITE 1 AC1 27 ASP A 278 ALA A 279 ALA A 310 GLN A 312 SITE 2 AC1 27 TYR A 314 ARG A 339 VAL A 341 LYS A 342 SITE 3 AC1 27 GLY A 343 ALA A 344 TYR A 345 TRP A 346 SITE 4 AC1 27 PHE A 364 THR A 365 ARG A 366 LYS A 367 SITE 5 AC1 27 THR A 370 ALA A 393 THR A 394 HIS A 395 SITE 6 AC1 27 ASN A 396 TYR A 441 SER A 466 PHE A 467 SITE 7 AC1 27 HOH A2120 HOH A2151 HOH A2211 SITE 1 AC2 7 PHE A 659 ARG A 791 SER A 793 ILE A 945 SITE 2 AC2 7 GLY A 946 ALA A 947 HOH A2154 SITE 1 AC3 4 ARG A 366 LYS A 367 ALA A 368 HOH A2124 SITE 1 AC4 1 ARG A 475 SITE 1 AC5 7 TYR A 12 ALA A 13 ASP A 359 VAL A 517 SITE 2 AC5 7 GLU A 518 ALA A 524 HOH A2299 SITE 1 AC6 5 VAL A 517 GLU A 518 PHE A 519 ASP A 603 SITE 2 AC6 5 HOH A2138 SITE 1 AC7 7 GLU A 256 ALA A 297 PRO A 299 LYS A 302 SITE 2 AC7 7 HIS A 332 ARG A 334 HOH A2418 SITE 1 AC8 26 ASP B 278 ALA B 279 ALA B 310 GLN B 312 SITE 2 AC8 26 TYR B 314 ARG B 339 VAL B 341 LYS B 342 SITE 3 AC8 26 GLY B 343 ALA B 344 TYR B 345 TRP B 346 SITE 4 AC8 26 PHE B 364 THR B 365 ARG B 366 LYS B 367 SITE 5 AC8 26 THR B 370 ALA B 393 THR B 394 HIS B 395 SITE 6 AC8 26 ASN B 396 TYR B 441 SER B 466 PHE B 467 SITE 7 AC8 26 HOH B1137 HOH B1138 SITE 1 AC9 8 PHE B 659 ARG B 791 SER B 793 ILE B 945 SITE 2 AC9 8 GLY B 946 ALA B 947 PHE B 954 HOH B1295 SITE 1 BC1 4 ARG B 366 LYS B 367 ALA B 368 HOH B1160 SITE 1 BC2 1 ARG B 475 SITE 1 BC3 5 TYR B 12 ASP B 359 VAL B 517 GLU B 518 SITE 2 BC3 5 ALA B 524 CRYST1 166.880 195.310 108.790 90.00 121.59 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005992 0.000000 0.003685 0.00000 SCALE2 0.000000 0.005120 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010791 0.00000