HEADER TOXIN 24-APR-14 4Q7G TITLE 1.7 ANGSTROM CRYSTAL STRUCTURE OF LEUKOTOXIN LUKD FROM STAPHYLOCOCCUS TITLE 2 AUREUS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCOTOXIN LUKDV; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VARIANT OF LUKD; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 282459; SOURCE 4 STRAIN: COL; SOURCE 5 GENE: HLGB, LUKD, LUKDV, SAS1748; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: KRXPGRO7; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 3 DISEASES, CSGID, LEUKOCIDIN-LIKE, DISTORTED SANDWICH, LEUKOCIDIN, KEYWDS 4 TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,S.NOCADELLO,L.SHUVALOVA,S.SHATSMAN,K.KWON,F.BAGNOLI, AUTHOR 2 F.FALUGI,M.BOTTOMLEY,G.GRANDI,W.F.ANDERSON,CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 4 20-SEP-23 4Q7G 1 REMARK SEQADV REVDAT 3 22-NOV-17 4Q7G 1 REMARK REVDAT 2 02-MAR-16 4Q7G 1 JRNL REVDAT 1 07-MAY-14 4Q7G 0 JRNL AUTH S.NOCADELLO,G.MINASOV,L.SHUVALOVA,I.DUBROVSKA,E.SABINI, JRNL AUTH 2 F.BAGNOLI,G.GRANDI,W.F.ANDERSON JRNL TITL CRYSTAL STRUCTURES OF THE COMPONENTS OF THE STAPHYLOCOCCUS JRNL TITL 2 AUREUS LEUKOTOXIN ED. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 72 113 2016 JRNL REF 2 BIOL JRNL REFN JRNL PMID 26894539 JRNL DOI 10.1107/S2059798315023207 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 35860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1876 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2605 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2408 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 381 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.53000 REMARK 3 B22 (A**2) : 0.78000 REMARK 3 B33 (A**2) : -2.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.988 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2686 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2425 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3667 ; 1.408 ; 1.925 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5614 ; 0.672 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 344 ; 4.778 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;38.869 ;25.612 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 459 ;10.953 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;10.487 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 376 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3250 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 671 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1316 ; 1.537 ; 1.707 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1315 ; 1.504 ; 1.702 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1680 ; 2.464 ; 2.558 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1681 ; 2.471 ; 2.561 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1370 ; 2.018 ; 1.910 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1370 ; 2.018 ; 1.910 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1988 ; 3.087 ; 2.771 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3319 ; 7.202 ;16.038 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3105 ; 6.904 ;14.749 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 47 REMARK 3 ORIGIN FOR THE GROUP (A): 45.3031 56.7915 0.0510 REMARK 3 T TENSOR REMARK 3 T11: 0.0179 T22: 0.0442 REMARK 3 T33: 0.0724 T12: 0.0210 REMARK 3 T13: 0.0031 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 2.7900 L22: 1.6261 REMARK 3 L33: 6.7217 L12: -0.1645 REMARK 3 L13: -0.5140 L23: 0.0561 REMARK 3 S TENSOR REMARK 3 S11: -0.0072 S12: -0.1903 S13: 0.1894 REMARK 3 S21: -0.0439 S22: -0.0125 S23: 0.1192 REMARK 3 S31: -0.1213 S32: -0.2557 S33: 0.0197 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 155 REMARK 3 ORIGIN FOR THE GROUP (A): 58.8442 52.1305 14.1173 REMARK 3 T TENSOR REMARK 3 T11: 0.0540 T22: 0.0165 REMARK 3 T33: 0.0351 T12: -0.0263 REMARK 3 T13: -0.0018 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.0101 L22: 0.2227 REMARK 3 L33: 2.5730 L12: 0.0310 REMARK 3 L13: 1.5502 L23: 0.1939 REMARK 3 S TENSOR REMARK 3 S11: 0.1164 S12: -0.0890 S13: -0.0226 REMARK 3 S21: 0.0658 S22: -0.0441 S23: -0.0232 REMARK 3 S31: 0.2076 S32: -0.1631 S33: -0.0723 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 156 A 183 REMARK 3 ORIGIN FOR THE GROUP (A): 63.3486 54.2968 8.4802 REMARK 3 T TENSOR REMARK 3 T11: 0.0222 T22: 0.0261 REMARK 3 T33: 0.0295 T12: 0.0055 REMARK 3 T13: -0.0008 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.5383 L22: 0.5892 REMARK 3 L33: 2.9320 L12: 0.2539 REMARK 3 L13: 1.5476 L23: -0.0942 REMARK 3 S TENSOR REMARK 3 S11: 0.0534 S12: 0.0976 S13: 0.0575 REMARK 3 S21: 0.0519 S22: -0.0693 S23: -0.0117 REMARK 3 S31: 0.0777 S32: 0.1591 S33: 0.0159 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 184 A 283 REMARK 3 ORIGIN FOR THE GROUP (A): 67.7637 52.0402 24.6780 REMARK 3 T TENSOR REMARK 3 T11: 0.1056 T22: 0.0267 REMARK 3 T33: 0.0470 T12: -0.0283 REMARK 3 T13: -0.0179 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.9317 L22: 0.1244 REMARK 3 L33: 2.5957 L12: -0.0904 REMARK 3 L13: 1.3368 L23: 0.1187 REMARK 3 S TENSOR REMARK 3 S11: 0.0860 S12: -0.0012 S13: -0.0190 REMARK 3 S21: 0.0839 S22: -0.0271 S23: -0.0204 REMARK 3 S31: 0.2842 S32: -0.0078 S33: -0.0589 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 284 A 325 REMARK 3 ORIGIN FOR THE GROUP (A): 56.5819 47.9467 25.2256 REMARK 3 T TENSOR REMARK 3 T11: 0.1454 T22: 0.1079 REMARK 3 T33: 0.0558 T12: -0.0818 REMARK 3 T13: 0.0111 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 3.7115 L22: 0.5813 REMARK 3 L33: 5.8458 L12: 0.5418 REMARK 3 L13: 4.3202 L23: 0.6256 REMARK 3 S TENSOR REMARK 3 S11: 0.2910 S12: -0.4701 S13: -0.0811 REMARK 3 S21: 0.1498 S22: -0.1140 S23: 0.0331 REMARK 3 S31: 0.5824 S32: -0.6562 S33: -0.1770 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Q7G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37802 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 22.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.61500 REMARK 200 R SYM FOR SHELL (I) : 0.61500 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1PVL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 2.6MG/ML, 0.5M SODIUM REMARK 280 CHLORIDE, 0.01M TRIS-HCL BUFFER, 0.5MM TCEP; SCREEN: CLASSICS II REMARK 280 (G7), 0.2M AMMONIUM ACETATE, 0.1M BIS-TRIS, 25% (W/V) PEG 3350, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.87000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.43400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.97200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.43400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.87000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.97200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 VAL A 14 REMARK 465 ASP A 15 REMARK 465 LEU A 16 REMARK 465 GLY A 17 REMARK 465 THR A 18 REMARK 465 GLU A 19 REMARK 465 ASN A 20 REMARK 465 LEU A 21 REMARK 465 TYR A 22 REMARK 465 PHE A 23 REMARK 465 GLN A 24 REMARK 465 SER A 25 REMARK 465 ASN A 26 REMARK 465 VAL A 327 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 39 -167.08 -161.56 REMARK 500 ALA A 82 -168.77 -129.95 REMARK 500 TYR A 97 -71.18 -79.78 REMARK 500 ASN A 117 103.68 -168.70 REMARK 500 GLN A 172 35.16 -150.74 REMARK 500 GLN A 172 35.16 -153.42 REMARK 500 SER A 174 -4.11 83.07 REMARK 500 HIS A 195 -59.45 -125.89 REMARK 500 LEU A 218 -61.89 -28.63 REMARK 500 ARG A 284 -20.31 94.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP00617 RELATED DB: TARGETTRACK DBREF 4Q7G A 27 327 UNP Q6G8A9 LUKDV_STAAS 27 327 SEQADV 4Q7G MET A 4 UNP Q6G8A9 INITIATING METHIONINE SEQADV 4Q7G HIS A 5 UNP Q6G8A9 EXPRESSION TAG SEQADV 4Q7G HIS A 6 UNP Q6G8A9 EXPRESSION TAG SEQADV 4Q7G HIS A 7 UNP Q6G8A9 EXPRESSION TAG SEQADV 4Q7G HIS A 8 UNP Q6G8A9 EXPRESSION TAG SEQADV 4Q7G HIS A 9 UNP Q6G8A9 EXPRESSION TAG SEQADV 4Q7G HIS A 10 UNP Q6G8A9 EXPRESSION TAG SEQADV 4Q7G SER A 11 UNP Q6G8A9 EXPRESSION TAG SEQADV 4Q7G SER A 12 UNP Q6G8A9 EXPRESSION TAG SEQADV 4Q7G GLY A 13 UNP Q6G8A9 EXPRESSION TAG SEQADV 4Q7G VAL A 14 UNP Q6G8A9 EXPRESSION TAG SEQADV 4Q7G ASP A 15 UNP Q6G8A9 EXPRESSION TAG SEQADV 4Q7G LEU A 16 UNP Q6G8A9 EXPRESSION TAG SEQADV 4Q7G GLY A 17 UNP Q6G8A9 EXPRESSION TAG SEQADV 4Q7G THR A 18 UNP Q6G8A9 EXPRESSION TAG SEQADV 4Q7G GLU A 19 UNP Q6G8A9 EXPRESSION TAG SEQADV 4Q7G ASN A 20 UNP Q6G8A9 EXPRESSION TAG SEQADV 4Q7G LEU A 21 UNP Q6G8A9 EXPRESSION TAG SEQADV 4Q7G TYR A 22 UNP Q6G8A9 EXPRESSION TAG SEQADV 4Q7G PHE A 23 UNP Q6G8A9 EXPRESSION TAG SEQADV 4Q7G GLN A 24 UNP Q6G8A9 EXPRESSION TAG SEQADV 4Q7G SER A 25 UNP Q6G8A9 EXPRESSION TAG SEQADV 4Q7G ASN A 26 UNP Q6G8A9 EXPRESSION TAG SEQRES 1 A 324 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 324 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA GLN HIS SEQRES 3 A 324 ILE THR PRO VAL SER GLU LYS LYS VAL ASP ASP LYS ILE SEQRES 4 A 324 THR LEU TYR LYS THR THR ALA THR SER ASP ASN ASP LYS SEQRES 5 A 324 LEU ASN ILE SER GLN ILE LEU THR PHE ASN PHE ILE LYS SEQRES 6 A 324 ASP LYS SER TYR ASP LYS ASP THR LEU VAL LEU LYS ALA SEQRES 7 A 324 ALA GLY ASN ILE ASN SER GLY TYR LYS LYS PRO ASN PRO SEQRES 8 A 324 LYS ASP TYR ASN TYR SER GLN PHE TYR TRP GLY GLY LYS SEQRES 9 A 324 TYR ASN VAL SER VAL SER SER GLU SER ASN ASP ALA VAL SEQRES 10 A 324 ASN VAL VAL ASP TYR ALA PRO LYS ASN GLN ASN GLU GLU SEQRES 11 A 324 PHE GLN VAL GLN GLN THR LEU GLY TYR SER TYR GLY GLY SEQRES 12 A 324 ASP ILE ASN ILE SER ASN GLY LEU SER GLY GLY LEU ASN SEQRES 13 A 324 GLY SER LYS SER PHE SER GLU THR ILE ASN TYR LYS GLN SEQRES 14 A 324 GLU SER TYR ARG THR THR ILE ASP ARG LYS THR ASN HIS SEQRES 15 A 324 LYS SER ILE GLY TRP GLY VAL GLU ALA HIS LYS ILE MET SEQRES 16 A 324 ASN ASN GLY TRP GLY PRO TYR GLY ARG ASP SER TYR ASP SEQRES 17 A 324 PRO THR TYR GLY ASN GLU LEU PHE LEU GLY GLY ARG GLN SEQRES 18 A 324 SER SER SER ASN ALA GLY GLN ASN PHE LEU PRO THR HIS SEQRES 19 A 324 GLN MET PRO LEU LEU ALA ARG GLY ASN PHE ASN PRO GLU SEQRES 20 A 324 PHE ILE SER VAL LEU SER HIS LYS GLN ASN ASP THR LYS SEQRES 21 A 324 LYS SER LYS ILE LYS VAL THR TYR GLN ARG GLU MET ASP SEQRES 22 A 324 ARG TYR THR ASN GLN TRP ASN ARG LEU HIS TRP VAL GLY SEQRES 23 A 324 ASN ASN TYR LYS ASN GLN ASN THR VAL THR PHE THR SER SEQRES 24 A 324 THR TYR GLU VAL ASP TRP GLN ASN HIS THR VAL LYS LEU SEQRES 25 A 324 ILE GLY THR ASP SER LYS GLU THR ASN PRO GLY VAL HET BTB A 401 14 HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETSYN BTB BIS-TRIS BUFFER FORMUL 2 BTB C8 H19 N O5 FORMUL 3 HOH *381(H2 O) HELIX 1 1 ASN A 228 ASN A 232 5 5 HELIX 2 2 PRO A 235 MET A 239 5 5 HELIX 3 3 PRO A 240 GLY A 245 1 6 SHEET 1 A 6 HIS A 29 ILE A 30 0 SHEET 2 A 6 ILE A 42 ASN A 53 -1 O THR A 50 N HIS A 29 SHEET 3 A 6 ILE A 58 ASP A 69 -1 O GLN A 60 N SER A 51 SHEET 4 A 6 LYS A 74 ASN A 86 -1 O THR A 76 N ILE A 67 SHEET 5 A 6 PHE A 251 LYS A 258 -1 O PHE A 251 N ALA A 81 SHEET 6 A 6 VAL A 120 ALA A 126 -1 N ASP A 124 O VAL A 254 SHEET 1 B 5 SER A 34 LYS A 37 0 SHEET 2 B 5 ILE A 42 ASN A 53 -1 O LEU A 44 N LYS A 36 SHEET 3 B 5 ILE A 58 ASP A 69 -1 O GLN A 60 N SER A 51 SHEET 4 B 5 LYS A 74 ASN A 86 -1 O THR A 76 N ILE A 67 SHEET 5 B 5 ASN A 246 PHE A 247 -1 O PHE A 247 N ILE A 85 SHEET 1 C 6 TYR A 175 ILE A 179 0 SHEET 2 C 6 SER A 187 ALA A 194 -1 O GLY A 191 N THR A 178 SHEET 3 C 6 TYR A 99 GLU A 115 -1 N VAL A 112 O ILE A 188 SHEET 4 C 6 SER A 265 TRP A 282 -1 O GLU A 274 N LYS A 107 SHEET 5 C 6 TRP A 287 ASP A 307 -1 O VAL A 306 N SER A 265 SHEET 6 C 6 THR A 312 GLU A 322 -1 O ILE A 316 N THR A 303 SHEET 1 D 3 ASP A 147 ASN A 152 0 SHEET 2 D 3 GLN A 135 SER A 143 -1 N THR A 139 O SER A 151 SHEET 3 D 3 PHE A 164 LYS A 171 -1 O GLU A 166 N LEU A 140 SHEET 1 E 2 ILE A 197 ASN A 199 0 SHEET 2 E 2 TRP A 202 TYR A 205 -1 O TYR A 205 N ILE A 197 CISPEP 1 ALA A 126 PRO A 127 0 0.89 CISPEP 2 GLY A 203 PRO A 204 0 4.78 SITE 1 AC1 10 ASN A 199 TRP A 202 TYR A 205 GLU A 217 SITE 2 AC1 10 LEU A 220 GLY A 221 GLY A 222 ARG A 223 SITE 3 AC1 10 HOH A 728 HOH A 824 CRYST1 49.740 49.944 134.868 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020105 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020022 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007415 0.00000