HEADER HYDROLASE/HYDROLASE INHIBITOR 25-APR-14 4Q80 TITLE NEUTROPHIL SERINE PROTEASE 4 (PRSS57) WITH VAL-LEU-LYS- TITLE 2 CHLOROMETHYLKETONE (VLK-CMK) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE 57; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SERINE PROTEASE 1-LIKE PROTEIN 1; COMPND 5 EC: 3.4.21.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRSS57, PRSSL1, UNQ782/PRO1599; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS TRYPSIN HOMOLOGY, PEPTIDASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.EIGENBROT,S.J.LIN,K.C.DONG REVDAT 5 20-SEP-23 4Q80 1 HETSYN REVDAT 4 29-JUL-20 4Q80 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 22-NOV-17 4Q80 1 REMARK REVDAT 2 17-SEP-14 4Q80 1 JRNL REVDAT 1 03-SEP-14 4Q80 0 JRNL AUTH S.J.LIN,K.C.DONG,C.EIGENBROT,M.VAN LOOKEREN CAMPAGNE, JRNL AUTH 2 D.KIRCHHOFER JRNL TITL STRUCTURES OF NEUTROPHIL SERINE PROTEASE 4 REVEAL AN UNUSUAL JRNL TITL 2 MECHANISM OF SUBSTRATE RECOGNITION BY A TRYPSIN-FOLD JRNL TITL 3 PROTEASE. JRNL REF STRUCTURE V. 22 1333 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 25156428 JRNL DOI 10.1016/J.STR.2014.07.008 REMARK 2 REMARK 2 RESOLUTION. 3.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 9240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.580 REMARK 3 FREE R VALUE TEST SET COUNT : 423 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.07 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.43 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.10 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2595 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2161 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2487 REMARK 3 BIN R VALUE (WORKING SET) : 0.2109 REMARK 3 BIN FREE R VALUE : 0.3422 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.16 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 108 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3562 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 148 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 80.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.61890 REMARK 3 B22 (A**2) : -3.61890 REMARK 3 B33 (A**2) : 7.23790 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.538 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3829 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5220 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1289 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 50 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 587 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3829 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 495 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4219 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.23 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.77 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.26 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|16 - A|67 } REMARK 3 ORIGIN FOR THE GROUP (A): -7.4685 -29.5180 -7.5481 REMARK 3 T TENSOR REMARK 3 T11: -0.0785 T22: -0.0057 REMARK 3 T33: -0.0924 T12: 0.1085 REMARK 3 T13: 0.0446 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 5.7557 L22: 4.1848 REMARK 3 L33: 2.4742 L12: 1.5646 REMARK 3 L13: -1.3709 L23: -0.0854 REMARK 3 S TENSOR REMARK 3 S11: 0.1000 S12: 0.3753 S13: 0.1349 REMARK 3 S21: -0.4366 S22: -0.1841 S23: 0.3895 REMARK 3 S31: -0.2940 S32: -0.3705 S33: 0.0841 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|68 - A|110 } REMARK 3 ORIGIN FOR THE GROUP (A): 1.0786 -23.9561 -7.5431 REMARK 3 T TENSOR REMARK 3 T11: 0.0354 T22: -0.0526 REMARK 3 T33: -0.1607 T12: 0.0817 REMARK 3 T13: 0.1068 T23: 0.0722 REMARK 3 L TENSOR REMARK 3 L11: 0.3004 L22: 4.8455 REMARK 3 L33: 2.0868 L12: 1.6011 REMARK 3 L13: 2.1466 L23: -0.5281 REMARK 3 S TENSOR REMARK 3 S11: 0.0634 S12: 0.2312 S13: 0.0985 REMARK 3 S21: -0.5074 S22: 0.0308 S23: -0.0281 REMARK 3 S31: -0.3557 S32: -0.0598 S33: -0.0942 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|111 - A|128 } REMARK 3 ORIGIN FOR THE GROUP (A): 1.6373 -24.8043 11.4635 REMARK 3 T TENSOR REMARK 3 T11: 0.1034 T22: -0.0540 REMARK 3 T33: -0.0710 T12: -0.0737 REMARK 3 T13: 0.1052 T23: -0.1109 REMARK 3 L TENSOR REMARK 3 L11: 0.9013 L22: 2.8086 REMARK 3 L33: 2.6480 L12: -0.9699 REMARK 3 L13: 1.3998 L23: 3.0810 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: 0.0371 S13: 0.1282 REMARK 3 S21: 0.0569 S22: -0.0396 S23: -0.0383 REMARK 3 S31: -0.0746 S32: -0.0278 S33: 0.0529 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|129 - A|233 } REMARK 3 ORIGIN FOR THE GROUP (A): 1.8895 -34.2212 4.4832 REMARK 3 T TENSOR REMARK 3 T11: -0.1246 T22: -0.0140 REMARK 3 T33: -0.1493 T12: -0.0907 REMARK 3 T13: 0.0603 T23: -0.0584 REMARK 3 L TENSOR REMARK 3 L11: 2.9257 L22: 5.5397 REMARK 3 L33: 2.1168 L12: -0.8817 REMARK 3 L13: -0.3464 L23: 2.2648 REMARK 3 S TENSOR REMARK 3 S11: 0.2824 S12: -0.3129 S13: 0.2559 REMARK 3 S21: 0.2452 S22: -0.1744 S23: -0.2284 REMARK 3 S31: 0.1439 S32: -0.2269 S33: -0.1080 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { B|16 - B|67 } REMARK 3 ORIGIN FOR THE GROUP (A): 24.8141 -52.8506 -17.9498 REMARK 3 T TENSOR REMARK 3 T11: -0.1408 T22: -0.1004 REMARK 3 T33: 0.0303 T12: -0.0036 REMARK 3 T13: 0.1012 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 6.5615 L22: 2.7302 REMARK 3 L33: 3.1346 L12: 1.3924 REMARK 3 L13: -0.4399 L23: 2.7768 REMARK 3 S TENSOR REMARK 3 S11: -0.0208 S12: 0.1484 S13: 0.0843 REMARK 3 S21: -0.1985 S22: 0.0685 S23: -0.4392 REMARK 3 S31: 0.0300 S32: 0.3897 S33: -0.0477 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { B|68 - B|110 } REMARK 3 ORIGIN FOR THE GROUP (A): 16.8999 -55.8228 -23.6346 REMARK 3 T TENSOR REMARK 3 T11: -0.1306 T22: -0.0082 REMARK 3 T33: -0.0875 T12: -0.0017 REMARK 3 T13: 0.0924 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.4700 L22: 4.0514 REMARK 3 L33: 3.9664 L12: -0.6672 REMARK 3 L13: -0.5672 L23: 1.5030 REMARK 3 S TENSOR REMARK 3 S11: 0.0554 S12: 0.2057 S13: 0.1116 REMARK 3 S21: -0.2812 S22: -0.1431 S23: -0.2536 REMARK 3 S31: 0.0494 S32: -0.2085 S33: 0.0877 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { B|111 - B|128 } REMARK 3 ORIGIN FOR THE GROUP (A): 13.4077 -70.1867 -11.9429 REMARK 3 T TENSOR REMARK 3 T11: 0.1581 T22: -0.1001 REMARK 3 T33: 0.1719 T12: -0.0550 REMARK 3 T13: 0.0555 T23: -0.0640 REMARK 3 L TENSOR REMARK 3 L11: -1.5070 L22: 4.3823 REMARK 3 L33: 0.2474 L12: 0.0400 REMARK 3 L13: -3.1826 L23: 1.1829 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: 0.1005 S13: -0.0535 REMARK 3 S21: -0.0065 S22: 0.0103 S23: -0.0037 REMARK 3 S31: 0.0209 S32: 0.0122 S33: 0.0115 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { B|129 - B|233 } REMARK 3 ORIGIN FOR THE GROUP (A): 13.9176 -59.5621 -8.4904 REMARK 3 T TENSOR REMARK 3 T11: -0.0628 T22: -0.2277 REMARK 3 T33: -0.0075 T12: -0.0852 REMARK 3 T13: -0.0223 T23: 0.0507 REMARK 3 L TENSOR REMARK 3 L11: 3.8005 L22: 2.5298 REMARK 3 L33: 4.6444 L12: -1.1238 REMARK 3 L13: -2.0030 L23: 1.8518 REMARK 3 S TENSOR REMARK 3 S11: -0.0600 S12: -0.1290 S13: -0.4833 REMARK 3 S21: 0.3482 S22: -0.1282 S23: -0.2286 REMARK 3 S31: 0.7250 S32: -0.1673 S33: 0.1882 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Q80 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085719. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9240 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.070 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15400 REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MR BUMP REMARK 200 STARTING MODEL: 1HNE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG-3350, 0.2 M POTASSIUM ACETATE, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.41867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.20933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.31400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 18.10467 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.52333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 247 REMARK 465 GLN A 248 REMARK 465 PRO A 249 REMARK 465 GLY A 250 REMARK 465 PRO A 251 REMARK 465 LEU A 252 REMARK 465 PRO A 253 REMARK 465 GLY A 254 REMARK 465 THR A 255 REMARK 465 THR A 256 REMARK 465 ARG A 257 REMARK 465 PRO A 258 REMARK 465 PRO A 259 REMARK 465 GLY A 260 REMARK 465 GLU A 261 REMARK 465 ALA A 262 REMARK 465 ALA A 263 REMARK 465 PRO B 247 REMARK 465 GLN B 248 REMARK 465 PRO B 249 REMARK 465 GLY B 250 REMARK 465 PRO B 251 REMARK 465 LEU B 252 REMARK 465 PRO B 253 REMARK 465 GLY B 254 REMARK 465 THR B 255 REMARK 465 THR B 256 REMARK 465 ARG B 257 REMARK 465 PRO B 258 REMARK 465 PRO B 259 REMARK 465 GLY B 260 REMARK 465 GLU B 261 REMARK 465 ALA B 262 REMARK 465 ALA B 263 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 195 O16 2YS B 305 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 71 -59.86 -133.77 REMARK 500 MET A 97 -45.08 92.19 REMARK 500 ARG A 126 35.60 -76.84 REMARK 500 VAL A 213 107.70 -44.05 REMARK 500 SER A 214 -73.28 -106.09 REMARK 500 LEU B 62B -38.28 -33.06 REMARK 500 HIS B 71 -65.45 -133.05 REMARK 500 MET B 97 -42.73 98.59 REMARK 500 ASN B 109 4.64 -68.93 REMARK 500 VAL B 213 108.45 -45.18 REMARK 500 SER B 214 -74.09 -105.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: D-VALYL-N-[(2S,3S)-7-AMINO-1-CHLORO-2-HYDROXYHEPTAN- REMARK 630 3-YL]-L-LEUCINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 2YS A 304 REMARK 630 2YS B 305 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: DVA LEU LYK 0QE REMARK 630 DETAILS: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Q7X RELATED DB: PDB REMARK 900 RELATED ID: 4Q7Y RELATED DB: PDB REMARK 900 RELATED ID: 4Q7Z RELATED DB: PDB REMARK 900 RELATED ID: 4Q80 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 NATURAL VARIANT DESCRIBED IN THE UNIPROT ENTRY Q6UWY2 DBREF 4Q80 A 16 263 UNP Q6UWY2 PRS57_HUMAN 34 283 DBREF 4Q80 B 16 263 UNP Q6UWY2 PRS57_HUMAN 34 283 SEQADV 4Q80 LEU A 123 UNP Q6UWY2 PRO 143 SEE REMARK 999 SEQADV 4Q80 LEU B 123 UNP Q6UWY2 PRO 143 SEE REMARK 999 SEQRES 1 A 250 ILE ILE GLY GLY HIS GLU VAL THR PRO HIS SER ARG PRO SEQRES 2 A 250 TYR MET ALA SER VAL ARG PHE GLY GLY GLN HIS HIS CYS SEQRES 3 A 250 GLY GLY PHE LEU LEU ARG ALA ARG TRP VAL VAL SER ALA SEQRES 4 A 250 ALA HIS CYS PHE SER HIS ARG ASP LEU ARG THR GLY LEU SEQRES 5 A 250 VAL VAL LEU GLY ALA HIS VAL LEU SER THR ALA GLU PRO SEQRES 6 A 250 THR GLN GLN VAL PHE GLY ILE ASP ALA LEU THR THR HIS SEQRES 7 A 250 PRO ASP TYR HIS PRO MET THR HIS ALA ASN ASP ILE CYS SEQRES 8 A 250 LEU LEU ARG LEU ASN GLY SER ALA VAL LEU GLY PRO ALA SEQRES 9 A 250 VAL GLY LEU LEU ARG LEU PRO GLY ARG ARG ALA ARG PRO SEQRES 10 A 250 PRO THR ALA GLY THR ARG CYS ARG VAL ALA GLY TRP GLY SEQRES 11 A 250 PHE VAL SER ASP PHE GLU GLU LEU PRO PRO GLY LEU MET SEQRES 12 A 250 GLU ALA LYS VAL ARG VAL LEU ASP PRO ASP VAL CYS ASN SEQRES 13 A 250 SER SER TRP LYS GLY HIS LEU THR LEU THR MET LEU CYS SEQRES 14 A 250 THR ARG SER GLY ASP SER HIS ARG ARG GLY PHE CYS SER SEQRES 15 A 250 ALA ASP SER GLY GLY PRO LEU VAL CYS ARG ASN ARG ALA SEQRES 16 A 250 HIS GLY LEU VAL SER PHE SER GLY LEU TRP CYS GLY ASP SEQRES 17 A 250 PRO LYS THR PRO ASP VAL TYR THR GLN VAL SER ALA PHE SEQRES 18 A 250 VAL ALA TRP ILE TRP ASP VAL VAL ARG ARG SER SER PRO SEQRES 19 A 250 GLN PRO GLY PRO LEU PRO GLY THR THR ARG PRO PRO GLY SEQRES 20 A 250 GLU ALA ALA SEQRES 1 B 250 ILE ILE GLY GLY HIS GLU VAL THR PRO HIS SER ARG PRO SEQRES 2 B 250 TYR MET ALA SER VAL ARG PHE GLY GLY GLN HIS HIS CYS SEQRES 3 B 250 GLY GLY PHE LEU LEU ARG ALA ARG TRP VAL VAL SER ALA SEQRES 4 B 250 ALA HIS CYS PHE SER HIS ARG ASP LEU ARG THR GLY LEU SEQRES 5 B 250 VAL VAL LEU GLY ALA HIS VAL LEU SER THR ALA GLU PRO SEQRES 6 B 250 THR GLN GLN VAL PHE GLY ILE ASP ALA LEU THR THR HIS SEQRES 7 B 250 PRO ASP TYR HIS PRO MET THR HIS ALA ASN ASP ILE CYS SEQRES 8 B 250 LEU LEU ARG LEU ASN GLY SER ALA VAL LEU GLY PRO ALA SEQRES 9 B 250 VAL GLY LEU LEU ARG LEU PRO GLY ARG ARG ALA ARG PRO SEQRES 10 B 250 PRO THR ALA GLY THR ARG CYS ARG VAL ALA GLY TRP GLY SEQRES 11 B 250 PHE VAL SER ASP PHE GLU GLU LEU PRO PRO GLY LEU MET SEQRES 12 B 250 GLU ALA LYS VAL ARG VAL LEU ASP PRO ASP VAL CYS ASN SEQRES 13 B 250 SER SER TRP LYS GLY HIS LEU THR LEU THR MET LEU CYS SEQRES 14 B 250 THR ARG SER GLY ASP SER HIS ARG ARG GLY PHE CYS SER SEQRES 15 B 250 ALA ASP SER GLY GLY PRO LEU VAL CYS ARG ASN ARG ALA SEQRES 16 B 250 HIS GLY LEU VAL SER PHE SER GLY LEU TRP CYS GLY ASP SEQRES 17 B 250 PRO LYS THR PRO ASP VAL TYR THR GLN VAL SER ALA PHE SEQRES 18 B 250 VAL ALA TRP ILE TRP ASP VAL VAL ARG ARG SER SER PRO SEQRES 19 B 250 GLN PRO GLY PRO LEU PRO GLY THR THR ARG PRO PRO GLY SEQRES 20 B 250 GLU ALA ALA MODRES 4Q80 ASN A 109 ASN GLYCOSYLATION SITE MODRES 4Q80 ASN B 109 ASN GLYCOSYLATION SITE MODRES 4Q80 ASN A 169 ASN GLYCOSYLATION SITE MODRES 4Q80 ASN B 169 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG A 301 14 HET 2YS A 304 25 HET 2YS B 305 25 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM 2YS D-VALYL-N-[(2S,3S)-7-AMINO-1-CHLORO-2-HYDROXYHEPTAN-3- HETNAM 2 2YS YL]-L-LEUCINAMIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN 2YS D-VAL-LEU-LYS-CHLOROMETHYLKETONE FORMUL 3 NAG 7(C8 H15 N O6) FORMUL 7 2YS 2(C18 H37 CL N4 O3) HELIX 1 1 ALA A 55 SER A 60 5 6 HELIX 2 2 ASP A 62A ARG A 62C 5 3 HELIX 3 3 ASP A 164 TRP A 172 1 9 HELIX 4 4 PHE A 234 SER A 245 1 12 HELIX 5 5 ALA B 55 PHE B 59 5 5 HELIX 6 6 ASP B 62A ARG B 62C 5 3 HELIX 7 7 ASP B 164 TRP B 172 1 9 HELIX 8 8 PHE B 234 SER B 245 1 12 SHEET 1 A 8 HIS A 20 GLU A 21 0 SHEET 2 A 8 MET A 156 LEU A 163 -1 O GLU A 157 N HIS A 20 SHEET 3 A 8 MET A 180 SER A 185 -1 O CYS A 182 N LEU A 163 SHEET 4 A 8 VAL A 227 GLN A 230 -1 O TYR A 228 N LEU A 181 SHEET 5 A 8 ARG A 208 PHE A 215 -1 N LEU A 212 O THR A 229 SHEET 6 A 8 PRO A 198 CYS A 201 -1 N LEU A 199 O GLY A 211 SHEET 7 A 8 ARG A 135 GLY A 140 -1 N ARG A 137 O VAL A 200 SHEET 8 A 8 MET A 156 LEU A 163 -1 O VAL A 160 N CYS A 136 SHEET 1 B 7 MET A 30 PHE A 35 0 SHEET 2 B 7 GLN A 39 ARG A 48 -1 O HIS A 41 N VAL A 33 SHEET 3 B 7 TRP A 51 SER A 54 -1 O TRP A 51 N LEU A 47 SHEET 4 B 7 CYS A 104 LEU A 108 -1 O LEU A 106 N VAL A 52 SHEET 5 B 7 GLN A 81 THR A 90 -1 N THR A 89 O LEU A 105 SHEET 6 B 7 GLY A 64 LEU A 68 -1 N LEU A 68 O GLN A 81 SHEET 7 B 7 MET A 30 PHE A 35 -1 N SER A 32 O VAL A 67 SHEET 1 C 8 HIS B 20 GLU B 21 0 SHEET 2 C 8 MET B 156 LEU B 163 -1 O GLU B 157 N HIS B 20 SHEET 3 C 8 MET B 180 SER B 185 -1 O CYS B 182 N LEU B 163 SHEET 4 C 8 VAL B 227 GLN B 230 -1 O TYR B 228 N LEU B 181 SHEET 5 C 8 ARG B 208 PHE B 215 -1 N LEU B 212 O THR B 229 SHEET 6 C 8 PRO B 198 CYS B 201 -1 N LEU B 199 O GLY B 211 SHEET 7 C 8 ARG B 135 GLY B 140 -1 N ARG B 137 O VAL B 200 SHEET 8 C 8 MET B 156 LEU B 163 -1 O VAL B 160 N CYS B 136 SHEET 1 D 7 MET B 30 PHE B 35 0 SHEET 2 D 7 GLN B 39 ARG B 48 -1 O HIS B 41 N VAL B 33 SHEET 3 D 7 TRP B 51 SER B 54 -1 O TRP B 51 N LEU B 47 SHEET 4 D 7 CYS B 104 LEU B 108 -1 O LEU B 106 N VAL B 52 SHEET 5 D 7 GLN B 81 THR B 90 -1 N THR B 89 O LEU B 105 SHEET 6 D 7 GLY B 64 LEU B 68 -1 N LEU B 68 O GLN B 81 SHEET 7 D 7 MET B 30 PHE B 35 -1 N SER B 32 O VAL B 67 SSBOND 1 CYS A 42 CYS A 58 1555 1555 2.05 SSBOND 2 CYS A 136 CYS A 201 1555 1555 2.05 SSBOND 3 CYS A 168 CYS A 182 1555 1555 2.04 SSBOND 4 CYS A 191 CYS A 220 1555 1555 2.06 SSBOND 5 CYS B 42 CYS B 58 1555 1555 2.04 SSBOND 6 CYS B 136 CYS B 201 1555 1555 2.05 SSBOND 7 CYS B 168 CYS B 182 1555 1555 2.04 SSBOND 8 CYS B 191 CYS B 220 1555 1555 2.04 LINK NE2 HIS A 57 C15 2YS A 304 1555 1555 1.38 LINK ND2 ASN A 109 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 169 C1 NAG A 301 1555 1555 1.44 LINK OG SER A 195 C14 2YS A 304 1555 1555 1.47 LINK NE2 HIS B 57 C15 2YS B 305 1555 1555 1.39 LINK ND2 ASN B 109 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN B 169 C1 NAG D 1 1555 1555 1.44 LINK OG SER B 195 C14 2YS B 305 1555 1555 1.38 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.41 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.46 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.42 CRYST1 89.707 89.707 108.628 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011147 0.006436 0.000000 0.00000 SCALE2 0.000000 0.012872 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009206 0.00000