data_4Q8D # _entry.id 4Q8D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4Q8D pdb_00004q8d 10.2210/pdb4q8d/pdb RCSB RCSB085732 ? ? WWPDB D_1000085732 ? ? # _pdbx_database_status.entry_id 4Q8D _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-04-26 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pham, J.D.' 1 'Spencer, R.K.' 2 'Chen, K.H.' 3 'Nowick, J.S.' 4 # _citation.id primary _citation.title 'A Fibril-Like Assembly of Oligomers of a Peptide Derived from beta-Amyloid.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 136 _citation.page_first 12682 _citation.page_last 12690 _citation.year 2014 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25068693 _citation.pdbx_database_id_DOI 10.1021/ja505713y # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pham, J.D.' 1 ? primary 'Spencer, R.K.' 2 ? primary 'Chen, K.H.' 3 ? primary 'Nowick, J.S.' 4 ? # _cell.entry_id 4Q8D _cell.length_a 32.174 _cell.length_b 62.852 _cell.length_c 20.094 _cell.angle_alpha 90.00 _cell.angle_beta 89.98 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4Q8D _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'macrocyclic beta-sheet peptide incorporating residues amyloid beta 15-23' 2400.423 2 ? ? ? ? 2 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 2 ? ? ? ? 3 water nat water 18.015 43 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ORN)QKLVF(PHI)AED(ORN)QKLV(HAO)ED' _entity_poly.pdbx_seq_one_letter_code_can AQKLVFFAEDAQKLVXED _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ORN n 1 2 GLN n 1 3 LYS n 1 4 LEU n 1 5 VAL n 1 6 PHE n 1 7 PHI n 1 8 ALA n 1 9 GLU n 1 10 ASP n 1 11 ORN n 1 12 GLN n 1 13 LYS n 1 14 LEU n 1 15 VAL n 1 16 HAO n 1 17 GLU n 1 18 ASP n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'synthetic construct' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4Q8D _struct_ref.pdbx_db_accession 4Q8D _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code QKLVFXAEDXQKLVXEDX _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4Q8D A 1 ? 18 ? 4Q8D 1 ? 18 ? 1 18 2 1 4Q8D B 1 ? 18 ? 4Q8D 1 ? 18 ? 1 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HAO peptide-like . '{[3-(hydrazinocarbonyl)-4-methoxyphenyl]amino}(oxo)acetic acid' ? 'C10 H11 N3 O5' 253.211 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 ORN 'L-peptide linking' n L-ornithine ? 'C5 H12 N2 O2' 132.161 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PHI 'L-peptide linking' n IODO-PHENYLALANINE ? 'C9 H10 I N O2' 291.086 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4Q8D _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.10 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 41.53 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.3 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1 M sodium citrate, 0.1 M ammonium acetate, 30% 2-methyl-2,4-pentanediol, pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00 _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL7-1 # _reflns.entry_id 4Q8D _reflns.d_resolution_high 1.634 _reflns.d_resolution_low 31.375 _reflns.number_obs ? _reflns.pdbx_redundancy 6.300 _reflns.percent_possible_obs 99.700 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.63 _reflns_shell.d_res_low 1.70 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.138 _reflns_shell.meanI_over_sigI_obs 9.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 6.4 _reflns_shell.number_unique_all 305 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4Q8D _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 7802 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 17.557 _refine.ls_d_res_high 1.746 _refine.ls_percent_reflns_obs 97.29 _refine.ls_R_factor_obs 0.1862 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1794 _refine.ls_R_factor_R_free 0.2197 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.41 _refine.ls_number_reflns_R_free 812 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values TWIN_LSQ_F _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML . _refine.pdbx_overall_phase_error 26.68 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 322 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 43 _refine_hist.number_atoms_total 381 _refine_hist.d_res_high 1.746 _refine_hist.d_res_low 17.557 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.009 ? ? 342 'X-RAY DIFFRACTION' ? f_angle_d 1.512 ? ? 456 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 28.809 ? ? 170 'X-RAY DIFFRACTION' ? f_chiral_restr 0.046 ? ? 44 'X-RAY DIFFRACTION' ? f_plane_restr 0.007 ? ? 58 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.7489 1.8583 1194 0.2589 88.00 0.2368 . . 137 . . . . 'X-RAY DIFFRACTION' . 1.8583 2.0016 1169 0.2218 88.00 0.2744 . . 138 . . . . 'X-RAY DIFFRACTION' . 2.0016 2.2026 1152 0.2016 88.00 0.2431 . . 130 . . . . 'X-RAY DIFFRACTION' . 2.2026 2.5204 1194 0.1978 88.00 0.2710 . . 135 . . . . 'X-RAY DIFFRACTION' . 2.5204 3.1721 1135 0.1649 86.00 0.2132 . . 137 . . . . 'X-RAY DIFFRACTION' . 3.1721 16.9299 1139 0.1403 87.00 0.1803 . . 123 . . . . # _struct.entry_id 4Q8D _struct.title 'Crystal structure of a macrocyclic beta-sheet peptide containing two beta-strands from amyloid beta residues 15-23' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4Q8D _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' _struct_keywords.text 'beta-sheet, synthetic peptide, artificial macrocycle, DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ORN 1 C ? ? ? 1_555 A GLN 2 N ? ? A ORN 1 A GLN 2 1_555 ? ? ? ? ? ? ? 1.372 ? ? covale2 covale both ? A ORN 1 NE ? ? ? 1_555 A ASP 18 C ? ? A ORN 1 A ASP 18 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale3 covale both ? A PHE 6 C ? ? ? 1_555 A PHI 7 N ? ? A PHE 6 A PHI 7 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A PHI 7 C ? ? ? 1_555 A ALA 8 N ? ? A PHI 7 A ALA 8 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale5 covale both ? A ASP 10 C ? ? ? 1_555 A ORN 11 NE ? ? A ASP 10 A ORN 11 1_555 ? ? ? ? ? ? ? 1.377 ? ? covale6 covale both ? A ORN 11 C ? ? ? 1_555 A GLN 12 N ? ? A ORN 11 A GLN 12 1_555 ? ? ? ? ? ? ? 1.367 ? ? covale7 covale both ? A VAL 15 C ? ? ? 1_555 A HAO 16 N ? ? A VAL 15 A HAO 16 1_555 ? ? ? ? ? ? ? 1.368 ? ? covale8 covale both ? A HAO 16 C ? ? ? 1_555 A GLU 17 N ? ? A HAO 16 A GLU 17 1_555 ? ? ? ? ? ? ? 1.365 ? ? covale9 covale both ? B ORN 1 C ? ? ? 1_555 B GLN 2 N ? ? B ORN 1 B GLN 2 1_555 ? ? ? ? ? ? ? 1.371 ? ? covale10 covale both ? B ORN 1 NE ? ? ? 1_555 B ASP 18 C ? ? B ORN 1 B ASP 18 1_555 ? ? ? ? ? ? ? 1.373 ? ? covale11 covale both ? B PHE 6 C ? ? ? 1_555 B PHI 7 N ? ? B PHE 6 B PHI 7 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale12 covale both ? B PHI 7 C ? ? ? 1_555 B ALA 8 N ? ? B PHI 7 B ALA 8 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale13 covale both ? B ASP 10 C ? ? ? 1_555 B ORN 11 NE ? ? B ASP 10 B ORN 11 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale14 covale both ? B ORN 11 C ? ? ? 1_555 B GLN 12 N ? ? B ORN 11 B GLN 12 1_555 ? ? ? ? ? ? ? 1.370 ? ? covale15 covale both ? B VAL 15 C ? ? ? 1_555 B HAO 16 N ? ? B VAL 15 B HAO 16 1_555 ? ? ? ? ? ? ? 1.373 ? ? covale16 covale both ? B HAO 16 C ? ? ? 1_555 B GLU 17 N ? ? B HAO 16 B GLU 17 1_555 ? ? ? ? ? ? ? 1.367 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 13 ? LEU A 14 ? LYS A 13 LEU A 14 A 2 LYS A 3 ? GLU A 9 ? LYS A 3 GLU A 9 A 3 LYS B 3 ? GLU B 9 ? LYS B 3 GLU B 9 A 4 LYS B 13 ? LEU B 14 ? LYS B 13 LEU B 14 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 14 ? O LEU A 14 N ALA A 8 ? N ALA A 8 A 2 3 N PHI A 7 ? N PHI A 7 O VAL B 5 ? O VAL B 5 A 3 4 N ALA B 8 ? N ALA B 8 O LEU B 14 ? O LEU B 14 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MPD 101 ? 6 'BINDING SITE FOR RESIDUE MPD A 101' AC2 Software B MPD 101 ? 5 'BINDING SITE FOR RESIDUE MPD B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 LYS A 3 ? LYS A 3 . ? 1_555 ? 2 AC1 6 LYS A 3 ? LYS A 3 . ? 2_655 ? 3 AC1 6 VAL A 5 ? VAL A 5 . ? 1_555 ? 4 AC1 6 HAO A 16 ? HAO A 16 . ? 1_555 ? 5 AC1 6 GLU A 17 ? GLU A 17 . ? 1_555 ? 6 AC1 6 PHI B 7 ? PHI B 7 . ? 2_655 ? 7 AC2 5 PHI A 7 ? PHI A 7 . ? 2_656 ? 8 AC2 5 HOH E . ? HOH A 204 . ? 2_656 ? 9 AC2 5 LYS B 3 ? LYS B 3 . ? 1_555 ? 10 AC2 5 GLU B 17 ? GLU B 17 . ? 1_555 ? 11 AC2 5 HOH F . ? HOH B 208 . ? 1_555 ? # _atom_sites.entry_id 4Q8D _atom_sites.fract_transf_matrix[1][1] 0.031192 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015936 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.049801 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H I N NA O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ORN 1 1 1 ORN ORN A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 PHI 7 7 7 PHI PHI A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 ORN 11 11 11 ORN ORN A . n A 1 12 GLN 12 12 12 GLN GLN A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 HAO 16 16 16 HAO HAO A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 ASP 18 18 18 ASP ASP A . n B 1 1 ORN 1 1 1 ORN ORN B . n B 1 2 GLN 2 2 2 GLN GLN B . n B 1 3 LYS 3 3 3 LYS LYS B . n B 1 4 LEU 4 4 4 LEU LEU B . n B 1 5 VAL 5 5 5 VAL VAL B . n B 1 6 PHE 6 6 6 PHE PHE B . n B 1 7 PHI 7 7 7 PHI PHI B . n B 1 8 ALA 8 8 8 ALA ALA B . n B 1 9 GLU 9 9 9 GLU GLU B . n B 1 10 ASP 10 10 10 ASP ASP B . n B 1 11 ORN 11 11 11 ORN ORN B . n B 1 12 GLN 12 12 12 GLN GLN B . n B 1 13 LYS 13 13 13 LYS LYS B . n B 1 14 LEU 14 14 14 LEU LEU B . n B 1 15 VAL 15 15 15 VAL VAL B . n B 1 16 HAO 16 16 16 HAO HAO B . n B 1 17 GLU 17 17 17 GLU GLU B . n B 1 18 ASP 18 18 18 ASP ASP B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD 1 101 1 MPD MPD A . D 2 MPD 1 101 2 MPD MPD B . E 3 HOH 1 201 1 HOH HOH A . E 3 HOH 2 202 4 HOH HOH A . E 3 HOH 3 203 8 HOH HOH A . E 3 HOH 4 204 9 HOH HOH A . E 3 HOH 5 205 10 HOH HOH A . E 3 HOH 6 206 11 HOH HOH A . E 3 HOH 7 207 13 HOH HOH A . E 3 HOH 8 208 14 HOH HOH A . E 3 HOH 9 209 15 HOH HOH A . E 3 HOH 10 210 17 HOH HOH A . E 3 HOH 11 211 20 HOH HOH A . E 3 HOH 12 212 21 HOH HOH A . E 3 HOH 13 213 22 HOH HOH A . E 3 HOH 14 214 23 HOH HOH A . E 3 HOH 15 215 25 HOH HOH A . E 3 HOH 16 216 27 HOH HOH A . E 3 HOH 17 217 28 HOH HOH A . E 3 HOH 18 218 30 HOH HOH A . E 3 HOH 19 219 31 HOH HOH A . E 3 HOH 20 220 32 HOH HOH A . E 3 HOH 21 221 34 HOH HOH A . E 3 HOH 22 222 37 HOH HOH A . E 3 HOH 23 223 41 HOH HOH A . E 3 HOH 24 224 42 HOH HOH A . E 3 HOH 25 225 26 HOH HOH A . E 3 HOH 26 226 29 HOH HOH A . F 3 HOH 1 201 2 HOH HOH B . F 3 HOH 2 202 3 HOH HOH B . F 3 HOH 3 203 5 HOH HOH B . F 3 HOH 4 204 6 HOH HOH B . F 3 HOH 5 205 7 HOH HOH B . F 3 HOH 6 206 12 HOH HOH B . F 3 HOH 7 207 16 HOH HOH B . F 3 HOH 8 208 18 HOH HOH B . F 3 HOH 9 209 19 HOH HOH B . F 3 HOH 10 210 24 HOH HOH B . F 3 HOH 11 211 33 HOH HOH B . F 3 HOH 12 212 35 HOH HOH B . F 3 HOH 13 213 36 HOH HOH B . F 3 HOH 14 214 38 HOH HOH B . F 3 HOH 15 215 40 HOH HOH B . F 3 HOH 16 216 44 HOH HOH B . F 3 HOH 17 217 45 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ORN 1 A ORN 1 ? ALA L-ORNITHINE 2 A PHI 7 A PHI 7 ? PHE IODO-PHENYLALANINE 3 A ORN 11 A ORN 11 ? ALA L-ORNITHINE 4 B ORN 1 B ORN 1 ? ALA L-ORNITHINE 5 B PHI 7 B PHI 7 ? PHE IODO-PHENYLALANINE 6 B ORN 11 B ORN 11 ? ALA L-ORNITHINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 software_defined_assembly PISA dimeric 2 4 software_defined_assembly PISA dimeric 2 5 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E 2 1 B,D,F 3 1,2 B,D,F 4 1,3 A,C,E 5 1 A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 3 'ABSA (A^2)' 1030 ? 3 MORE -23 ? 3 'SSA (A^2)' 3910 ? 4 'ABSA (A^2)' 940 ? 4 MORE -23 ? 4 'SSA (A^2)' 4150 ? 5 'ABSA (A^2)' 1120 ? 5 MORE -11 ? 5 'SSA (A^2)' 3890 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 32.0595024365 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 20.0799180739 3 'crystal symmetry operation' 2_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 32.0595024365 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 207 ? E HOH . 2 1 A HOH 224 ? E HOH . 3 1 B HOH 206 ? F HOH . 4 1 B HOH 216 ? F HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-08-13 2 'Structure model' 1 1 2014-09-24 3 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' atom_site_anisotrop 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_validate_polymer_linkage 7 3 'Structure model' pdbx_validate_rmsd_angle 8 3 'Structure model' struct_conn 9 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_atom_id' 6 3 'Structure model' '_atom_site.label_atom_id' 7 3 'Structure model' '_atom_site.type_symbol' 8 3 'Structure model' '_atom_site_anisotrop.id' 9 3 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 10 3 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 11 3 'Structure model' '_database_2.pdbx_DOI' 12 3 'Structure model' '_database_2.pdbx_database_accession' 13 3 'Structure model' '_struct_conn.pdbx_dist_value' 14 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 15 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 16 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 17 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 18 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 19 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 20 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 22 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 23 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 29 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 9.3151 33.9290 -1.2276 0.1080 0.1561 0.1069 0.0883 -0.0143 0.0002 0.8739 0.8803 0.0648 -0.1773 -0.1212 -0.0094 0.0061 0.0280 0.1026 -0.0113 0.0244 0.2332 0.0114 -0.0216 -0.0542 'X-RAY DIFFRACTION' 2 ? refined 10.1935 19.8999 1.5058 0.1068 0.1653 0.0998 -0.0429 -0.0523 0.0038 0.1932 3.1622 0.9430 0.2004 -0.3173 -1.4450 -0.0574 -0.0042 0.0308 0.0277 -0.1035 -0.0818 -0.0292 -0.1284 0.1462 'X-RAY DIFFRACTION' 3 ? refined 9.3279 20.1012 11.4177 0.0493 0.1525 0.0955 -0.0459 -0.0306 0.0168 0.1518 0.1770 0.0214 0.1612 0.0449 0.0542 -0.0020 -0.1230 0.1052 0.0144 -0.0282 0.0680 0.0190 -0.0782 0.0187 'X-RAY DIFFRACTION' 4 ? refined 10.4649 34.2252 8.5517 0.1317 0.1508 0.0616 0.0743 0.0167 0.0007 0.7653 0.5384 1.3154 0.0038 0.4035 -0.5885 0.0081 -0.0835 0.1205 -0.0392 -0.0080 0.0448 -0.0164 -0.2024 -0.0011 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1 through 7 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 9 through 18 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 1 through 7 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 9 through 18 ) ; # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MOSFLM . ? package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 2 SCALA . ? other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 3 SOLVE 2.15 20-Mar-2010 program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 4 RESOLVE 2.15 20-Mar-2010 program 'Thomas C. Terwilliger' terwilliger@lanl.gov phasing http://www.solve.lanl.gov/ ? ? 5 PHENIX 1.9_1692 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 222 ? ? O A HOH 223 ? ? 2.15 2 1 O A HOH 220 ? ? O A HOH 221 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 HZ1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 LYS _pdbx_validate_symm_contact.auth_seq_id_1 13 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 205 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_656 _pdbx_validate_symm_contact.dist 1.59 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A HAO 16 ? ? C A HAO 16 ? ? N A GLU 17 ? ? 142.72 117.20 25.52 2.20 Y 2 1 C B VAL 15 ? ? N B HAO 16 ? ? CA B HAO 16 ? ? 136.87 121.70 15.17 2.50 Y 3 1 CA B HAO 16 ? ? C B HAO 16 ? ? N B GLU 17 ? ? 140.39 117.20 23.19 2.20 Y 4 1 C B GLU 17 ? ? N B ASP 18 ? ? CA B ASP 18 ? ? 145.43 121.70 23.73 2.50 Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASP N N N N 14 ASP CA C N S 15 ASP C C N N 16 ASP O O N N 17 ASP CB C N N 18 ASP CG C N N 19 ASP OD1 O N N 20 ASP OD2 O N N 21 ASP OXT O N N 22 ASP H H N N 23 ASP H2 H N N 24 ASP HA H N N 25 ASP HB2 H N N 26 ASP HB3 H N N 27 ASP HD2 H N N 28 ASP HXT H N N 29 GLN N N N N 30 GLN CA C N S 31 GLN C C N N 32 GLN O O N N 33 GLN CB C N N 34 GLN CG C N N 35 GLN CD C N N 36 GLN OE1 O N N 37 GLN NE2 N N N 38 GLN OXT O N N 39 GLN H H N N 40 GLN H2 H N N 41 GLN HA H N N 42 GLN HB2 H N N 43 GLN HB3 H N N 44 GLN HG2 H N N 45 GLN HG3 H N N 46 GLN HE21 H N N 47 GLN HE22 H N N 48 GLN HXT H N N 49 GLU N N N N 50 GLU CA C N S 51 GLU C C N N 52 GLU O O N N 53 GLU CB C N N 54 GLU CG C N N 55 GLU CD C N N 56 GLU OE1 O N N 57 GLU OE2 O N N 58 GLU OXT O N N 59 GLU H H N N 60 GLU H2 H N N 61 GLU HA H N N 62 GLU HB2 H N N 63 GLU HB3 H N N 64 GLU HG2 H N N 65 GLU HG3 H N N 66 GLU HE2 H N N 67 GLU HXT H N N 68 HAO N N N N 69 HAO N9 N N N 70 HAO C10 C N N 71 HAO O11 O N N 72 HAO CA C Y N 73 HAO C13 C Y N 74 HAO C14 C Y N 75 HAO C15 C N N 76 HAO O15 O N N 77 HAO C17 C Y N 78 HAO C18 C Y N 79 HAO C19 C Y N 80 HAO N20 N N N 81 HAO C21 C N N 82 HAO O22 O N N 83 HAO C C N N 84 HAO O O N N 85 HAO H H N N 86 HAO H13 H N N 87 HAO H15 H N N 88 HAO H15A H N N 89 HAO H15B H N N 90 HAO H17 H N N 91 HAO H18 H N N 92 HAO HN20 H N N 93 HAO OXT O N N 94 HAO H2 H N N 95 HAO H10 H N N 96 HAO HXT H N N 97 HOH O O N N 98 HOH H1 H N N 99 HOH H2 H N N 100 LEU N N N N 101 LEU CA C N S 102 LEU C C N N 103 LEU O O N N 104 LEU CB C N N 105 LEU CG C N N 106 LEU CD1 C N N 107 LEU CD2 C N N 108 LEU OXT O N N 109 LEU H H N N 110 LEU H2 H N N 111 LEU HA H N N 112 LEU HB2 H N N 113 LEU HB3 H N N 114 LEU HG H N N 115 LEU HD11 H N N 116 LEU HD12 H N N 117 LEU HD13 H N N 118 LEU HD21 H N N 119 LEU HD22 H N N 120 LEU HD23 H N N 121 LEU HXT H N N 122 LYS N N N N 123 LYS CA C N S 124 LYS C C N N 125 LYS O O N N 126 LYS CB C N N 127 LYS CG C N N 128 LYS CD C N N 129 LYS CE C N N 130 LYS NZ N N N 131 LYS OXT O N N 132 LYS H H N N 133 LYS H2 H N N 134 LYS HA H N N 135 LYS HB2 H N N 136 LYS HB3 H N N 137 LYS HG2 H N N 138 LYS HG3 H N N 139 LYS HD2 H N N 140 LYS HD3 H N N 141 LYS HE2 H N N 142 LYS HE3 H N N 143 LYS HZ1 H N N 144 LYS HZ2 H N N 145 LYS HZ3 H N N 146 LYS HXT H N N 147 MPD C1 C N N 148 MPD C2 C N N 149 MPD O2 O N N 150 MPD CM C N N 151 MPD C3 C N N 152 MPD C4 C N S 153 MPD O4 O N N 154 MPD C5 C N N 155 MPD H11 H N N 156 MPD H12 H N N 157 MPD H13 H N N 158 MPD HO2 H N N 159 MPD HM1 H N N 160 MPD HM2 H N N 161 MPD HM3 H N N 162 MPD H31 H N N 163 MPD H32 H N N 164 MPD H4 H N N 165 MPD HO4 H N N 166 MPD H51 H N N 167 MPD H52 H N N 168 MPD H53 H N N 169 ORN N N N N 170 ORN CA C N S 171 ORN CB C N N 172 ORN CG C N N 173 ORN CD C N N 174 ORN NE N N N 175 ORN C C N N 176 ORN O O N N 177 ORN OXT O N N 178 ORN H H N N 179 ORN H2 H N N 180 ORN HA H N N 181 ORN HB2 H N N 182 ORN HB3 H N N 183 ORN HG2 H N N 184 ORN HG3 H N N 185 ORN HD2 H N N 186 ORN HD3 H N N 187 ORN HE1 H N N 188 ORN HE2 H N N 189 ORN HXT H N N 190 PHE N N N N 191 PHE CA C N S 192 PHE C C N N 193 PHE O O N N 194 PHE CB C N N 195 PHE CG C Y N 196 PHE CD1 C Y N 197 PHE CD2 C Y N 198 PHE CE1 C Y N 199 PHE CE2 C Y N 200 PHE CZ C Y N 201 PHE OXT O N N 202 PHE H H N N 203 PHE H2 H N N 204 PHE HA H N N 205 PHE HB2 H N N 206 PHE HB3 H N N 207 PHE HD1 H N N 208 PHE HD2 H N N 209 PHE HE1 H N N 210 PHE HE2 H N N 211 PHE HZ H N N 212 PHE HXT H N N 213 PHI N N N N 214 PHI CA C N S 215 PHI CB C N N 216 PHI CG C Y N 217 PHI CD1 C Y N 218 PHI CD2 C Y N 219 PHI CE1 C Y N 220 PHI CE2 C Y N 221 PHI CZ C Y N 222 PHI I I N N 223 PHI C C N N 224 PHI O O N N 225 PHI OXT O N N 226 PHI H H N N 227 PHI H2 H N N 228 PHI HA H N N 229 PHI HB2 H N N 230 PHI HB3 H N N 231 PHI HD1 H N N 232 PHI HD2 H N N 233 PHI HE1 H N N 234 PHI HE2 H N N 235 PHI HXT H N N 236 VAL N N N N 237 VAL CA C N S 238 VAL C C N N 239 VAL O O N N 240 VAL CB C N N 241 VAL CG1 C N N 242 VAL CG2 C N N 243 VAL OXT O N N 244 VAL H H N N 245 VAL H2 H N N 246 VAL HA H N N 247 VAL HB H N N 248 VAL HG11 H N N 249 VAL HG12 H N N 250 VAL HG13 H N N 251 VAL HG21 H N N 252 VAL HG22 H N N 253 VAL HG23 H N N 254 VAL HXT H N N 255 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASP N CA sing N N 13 ASP N H sing N N 14 ASP N H2 sing N N 15 ASP CA C sing N N 16 ASP CA CB sing N N 17 ASP CA HA sing N N 18 ASP C O doub N N 19 ASP C OXT sing N N 20 ASP CB CG sing N N 21 ASP CB HB2 sing N N 22 ASP CB HB3 sing N N 23 ASP CG OD1 doub N N 24 ASP CG OD2 sing N N 25 ASP OD2 HD2 sing N N 26 ASP OXT HXT sing N N 27 GLN N CA sing N N 28 GLN N H sing N N 29 GLN N H2 sing N N 30 GLN CA C sing N N 31 GLN CA CB sing N N 32 GLN CA HA sing N N 33 GLN C O doub N N 34 GLN C OXT sing N N 35 GLN CB CG sing N N 36 GLN CB HB2 sing N N 37 GLN CB HB3 sing N N 38 GLN CG CD sing N N 39 GLN CG HG2 sing N N 40 GLN CG HG3 sing N N 41 GLN CD OE1 doub N N 42 GLN CD NE2 sing N N 43 GLN NE2 HE21 sing N N 44 GLN NE2 HE22 sing N N 45 GLN OXT HXT sing N N 46 GLU N CA sing N N 47 GLU N H sing N N 48 GLU N H2 sing N N 49 GLU CA C sing N N 50 GLU CA CB sing N N 51 GLU CA HA sing N N 52 GLU C O doub N N 53 GLU C OXT sing N N 54 GLU CB CG sing N N 55 GLU CB HB2 sing N N 56 GLU CB HB3 sing N N 57 GLU CG CD sing N N 58 GLU CG HG2 sing N N 59 GLU CG HG3 sing N N 60 GLU CD OE1 doub N N 61 GLU CD OE2 sing N N 62 GLU OE2 HE2 sing N N 63 GLU OXT HXT sing N N 64 HAO N N9 sing N N 65 HAO N H sing N N 66 HAO C10 N9 sing N N 67 HAO C10 CA sing N N 68 HAO O11 C10 doub N N 69 HAO CA C14 sing Y N 70 HAO C13 CA doub Y N 71 HAO C13 C19 sing Y N 72 HAO C13 H13 sing N N 73 HAO C14 C17 doub Y N 74 HAO C14 O15 sing N N 75 HAO C15 H15 sing N N 76 HAO C15 H15A sing N N 77 HAO C15 H15B sing N N 78 HAO O15 C15 sing N N 79 HAO C17 H17 sing N N 80 HAO C18 C17 sing Y N 81 HAO C18 H18 sing N N 82 HAO C19 C18 doub Y N 83 HAO N20 C19 sing N N 84 HAO N20 HN20 sing N N 85 HAO C21 N20 sing N N 86 HAO C21 O22 doub N N 87 HAO C C21 sing N N 88 HAO C OXT sing N N 89 HAO O C doub N N 90 HAO N H2 sing N N 91 HAO N9 H10 sing N N 92 HAO OXT HXT sing N N 93 HOH O H1 sing N N 94 HOH O H2 sing N N 95 LEU N CA sing N N 96 LEU N H sing N N 97 LEU N H2 sing N N 98 LEU CA C sing N N 99 LEU CA CB sing N N 100 LEU CA HA sing N N 101 LEU C O doub N N 102 LEU C OXT sing N N 103 LEU CB CG sing N N 104 LEU CB HB2 sing N N 105 LEU CB HB3 sing N N 106 LEU CG CD1 sing N N 107 LEU CG CD2 sing N N 108 LEU CG HG sing N N 109 LEU CD1 HD11 sing N N 110 LEU CD1 HD12 sing N N 111 LEU CD1 HD13 sing N N 112 LEU CD2 HD21 sing N N 113 LEU CD2 HD22 sing N N 114 LEU CD2 HD23 sing N N 115 LEU OXT HXT sing N N 116 LYS N CA sing N N 117 LYS N H sing N N 118 LYS N H2 sing N N 119 LYS CA C sing N N 120 LYS CA CB sing N N 121 LYS CA HA sing N N 122 LYS C O doub N N 123 LYS C OXT sing N N 124 LYS CB CG sing N N 125 LYS CB HB2 sing N N 126 LYS CB HB3 sing N N 127 LYS CG CD sing N N 128 LYS CG HG2 sing N N 129 LYS CG HG3 sing N N 130 LYS CD CE sing N N 131 LYS CD HD2 sing N N 132 LYS CD HD3 sing N N 133 LYS CE NZ sing N N 134 LYS CE HE2 sing N N 135 LYS CE HE3 sing N N 136 LYS NZ HZ1 sing N N 137 LYS NZ HZ2 sing N N 138 LYS NZ HZ3 sing N N 139 LYS OXT HXT sing N N 140 MPD C1 C2 sing N N 141 MPD C1 H11 sing N N 142 MPD C1 H12 sing N N 143 MPD C1 H13 sing N N 144 MPD C2 O2 sing N N 145 MPD C2 CM sing N N 146 MPD C2 C3 sing N N 147 MPD O2 HO2 sing N N 148 MPD CM HM1 sing N N 149 MPD CM HM2 sing N N 150 MPD CM HM3 sing N N 151 MPD C3 C4 sing N N 152 MPD C3 H31 sing N N 153 MPD C3 H32 sing N N 154 MPD C4 O4 sing N N 155 MPD C4 C5 sing N N 156 MPD C4 H4 sing N N 157 MPD O4 HO4 sing N N 158 MPD C5 H51 sing N N 159 MPD C5 H52 sing N N 160 MPD C5 H53 sing N N 161 ORN N CA sing N N 162 ORN N H sing N N 163 ORN N H2 sing N N 164 ORN CA CB sing N N 165 ORN CA C sing N N 166 ORN CA HA sing N N 167 ORN CB CG sing N N 168 ORN CB HB2 sing N N 169 ORN CB HB3 sing N N 170 ORN CG CD sing N N 171 ORN CG HG2 sing N N 172 ORN CG HG3 sing N N 173 ORN CD NE sing N N 174 ORN CD HD2 sing N N 175 ORN CD HD3 sing N N 176 ORN NE HE1 sing N N 177 ORN NE HE2 sing N N 178 ORN C O doub N N 179 ORN C OXT sing N N 180 ORN OXT HXT sing N N 181 PHE N CA sing N N 182 PHE N H sing N N 183 PHE N H2 sing N N 184 PHE CA C sing N N 185 PHE CA CB sing N N 186 PHE CA HA sing N N 187 PHE C O doub N N 188 PHE C OXT sing N N 189 PHE CB CG sing N N 190 PHE CB HB2 sing N N 191 PHE CB HB3 sing N N 192 PHE CG CD1 doub Y N 193 PHE CG CD2 sing Y N 194 PHE CD1 CE1 sing Y N 195 PHE CD1 HD1 sing N N 196 PHE CD2 CE2 doub Y N 197 PHE CD2 HD2 sing N N 198 PHE CE1 CZ doub Y N 199 PHE CE1 HE1 sing N N 200 PHE CE2 CZ sing Y N 201 PHE CE2 HE2 sing N N 202 PHE CZ HZ sing N N 203 PHE OXT HXT sing N N 204 PHI N CA sing N N 205 PHI N H sing N N 206 PHI N H2 sing N N 207 PHI CA CB sing N N 208 PHI CA C sing N N 209 PHI CA HA sing N N 210 PHI CB CG sing N N 211 PHI CB HB2 sing N N 212 PHI CB HB3 sing N N 213 PHI CG CD1 doub Y N 214 PHI CG CD2 sing Y N 215 PHI CD1 CE1 sing Y N 216 PHI CD1 HD1 sing N N 217 PHI CD2 CE2 doub Y N 218 PHI CD2 HD2 sing N N 219 PHI CE1 CZ doub Y N 220 PHI CE1 HE1 sing N N 221 PHI CE2 CZ sing Y N 222 PHI CE2 HE2 sing N N 223 PHI CZ I sing N N 224 PHI C O doub N N 225 PHI C OXT sing N N 226 PHI OXT HXT sing N N 227 VAL N CA sing N N 228 VAL N H sing N N 229 VAL N H2 sing N N 230 VAL CA C sing N N 231 VAL CA CB sing N N 232 VAL CA HA sing N N 233 VAL C O doub N N 234 VAL C OXT sing N N 235 VAL CB CG1 sing N N 236 VAL CB CG2 sing N N 237 VAL CB HB sing N N 238 VAL CG1 HG11 sing N N 239 VAL CG1 HG12 sing N N 240 VAL CG1 HG13 sing N N 241 VAL CG2 HG21 sing N N 242 VAL CG2 HG22 sing N N 243 VAL CG2 HG23 sing N N 244 VAL OXT HXT sing N N 245 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 3 water HOH #