HEADER HYDROLASE/HYDROLASE INHIBITOR 07-MAY-14 4QBB TITLE STRUCTURE OF THE FOOT-AND-MOUTH DISEASE VIRUS LEADER PROTEINASE IN TITLE 2 COMPLEX WITH INHIBITOR (N~2~-[(3S)-4-({(2R)-1-[(4- TITLE 3 CARBAMIMIDAMIDOBUTYL)AMINO]-4-METHYL-1-OXOPENTAN-2-YL}AMINO)-3- TITLE 4 HYDROXY-4-OXOBUTANOYL]-L-ARGINYL-L-PROLINAMIDE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEADER PROTEASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: GENOME POLYPROTEIN; COMPND 5 EC: 3.4.22.46; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FOOT-AND-MOUTH DISEASE VIRUS; SOURCE 3 ORGANISM_COMMON: FMDV; SOURCE 4 ORGANISM_TAXID: 73482; SOURCE 5 STRAIN: O1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PAPAIN-LIKE CYSTEINE PROTEINASE, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.GRISHKOVSKAYA,J.STEINBERGER,R.CENCIC,M.A.JULIANO,L.JULIANO,T.SKERN REVDAT 1 05-NOV-14 4QBB 0 JRNL AUTH J.STEINBERGER,I.GRISHKOVSKAYA,R.CENCIC,L.JULIANO, JRNL AUTH 2 M.A.JULIANO,T.SKERN JRNL TITL FOOT-AND-MOUTH DISEASE VIRUS LEADER PROTEINASE: STRUCTURAL JRNL TITL 2 INSIGHTS INTO THE MECHANISM OF INTERMOLECULAR CLEAVAGE. JRNL REF VIROLOGY V.470C 397 2014 JRNL REFN ISSN 0042-6822 JRNL PMID 25240326 JRNL DOI 10.1016/J.VIROL.2014.08.023 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 72868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.3668 - 4.7385 1.00 2738 149 0.1553 0.1945 REMARK 3 2 4.7385 - 3.7617 1.00 2713 132 0.1359 0.1536 REMARK 3 3 3.7617 - 3.2863 1.00 2741 120 0.1544 0.1769 REMARK 3 4 3.2863 - 2.9859 1.00 2684 148 0.1770 0.2046 REMARK 3 5 2.9859 - 2.7719 1.00 2676 168 0.1787 0.2153 REMARK 3 6 2.7719 - 2.6085 1.00 2695 143 0.1881 0.1940 REMARK 3 7 2.6085 - 2.4779 1.00 2692 142 0.1818 0.2238 REMARK 3 8 2.4779 - 2.3700 1.00 2698 134 0.1758 0.2043 REMARK 3 9 2.3700 - 2.2788 1.00 2656 145 0.1719 0.1861 REMARK 3 10 2.2788 - 2.2002 0.99 2695 132 0.1724 0.1902 REMARK 3 11 2.2002 - 2.1314 0.99 2699 125 0.1747 0.1897 REMARK 3 12 2.1314 - 2.0705 0.99 2643 144 0.1721 0.2115 REMARK 3 13 2.0705 - 2.0159 1.00 2669 149 0.1722 0.2283 REMARK 3 14 2.0159 - 1.9668 1.00 2685 127 0.1848 0.2144 REMARK 3 15 1.9668 - 1.9221 0.99 2701 134 0.1862 0.2537 REMARK 3 16 1.9221 - 1.8811 0.99 2622 144 0.1837 0.2290 REMARK 3 17 1.8811 - 1.8435 1.00 2682 141 0.1861 0.2297 REMARK 3 18 1.8435 - 1.8087 0.99 2685 140 0.1786 0.2391 REMARK 3 19 1.8087 - 1.7764 1.00 2651 139 0.1885 0.2206 REMARK 3 20 1.7764 - 1.7463 1.00 2693 143 0.1912 0.2311 REMARK 3 21 1.7463 - 1.7181 0.99 2651 170 0.1949 0.2295 REMARK 3 22 1.7181 - 1.6917 1.00 2615 143 0.1902 0.2244 REMARK 3 23 1.6917 - 1.6668 1.00 2695 149 0.1963 0.2564 REMARK 3 24 1.6668 - 1.6433 1.00 2665 146 0.1959 0.1831 REMARK 3 25 1.6433 - 1.6211 0.94 2487 140 0.2031 0.2732 REMARK 3 26 1.6211 - 1.6001 0.87 2358 132 0.2115 0.2643 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4212 REMARK 3 ANGLE : 1.399 5782 REMARK 3 CHIRALITY : 0.076 610 REMARK 3 PLANARITY : 0.007 764 REMARK 3 DIHEDRAL : 14.560 1526 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QBB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-14. REMARK 100 THE RCSB ID CODE IS RCSB085838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72906 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 56.205 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03700 REMARK 200 FOR THE DATA SET : 29.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.17400 REMARK 200 R SYM FOR SHELL (I) : 0.17400 REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC V5.5.0110 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE, 0.9M MONOSODIUM REMARK 280 PHOSPHATE, 1.2M DIPOTASSIUM PHOSPHATE, PH 4.8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.34100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 188 REMARK 465 ASN A 189 REMARK 465 GLY A 190 REMARK 465 GLU A 191 REMARK 465 TRP A 192 REMARK 465 LYS A 193 REMARK 465 ALA A 194 REMARK 465 LYS A 195 REMARK 465 GLN B 185 REMARK 465 GLU B 186 REMARK 465 PRO B 187 REMARK 465 LEU B 188 REMARK 465 ASN B 189 REMARK 465 GLY B 190 REMARK 465 GLU B 191 REMARK 465 TRP B 192 REMARK 465 LYS B 193 REMARK 465 ALA B 194 REMARK 465 LYS B 195 REMARK 465 GLU C 186 REMARK 465 PRO C 187 REMARK 465 LEU C 188 REMARK 465 ASN C 189 REMARK 465 GLY C 190 REMARK 465 GLU C 191 REMARK 465 TRP C 192 REMARK 465 LYS C 193 REMARK 465 ALA C 194 REMARK 465 LYS C 195 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 146 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 362 O HOH C 414 2.03 REMARK 500 NZ LYS B 38 O HOH B 400 2.05 REMARK 500 NZ LYS A 108 O HOH A 382 2.11 REMARK 500 O PHE A 67 O HOH A 419 2.12 REMARK 500 O HOH A 372 O HOH A 375 2.12 REMARK 500 OE2 GLU C 147 O1 E69 C 201 2.14 REMARK 500 O HOH C 339 O HOH C 353 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 128 24.96 -150.75 REMARK 500 ASP A 164 -110.82 58.53 REMARK 500 TRP A 170 119.40 -164.75 REMARK 500 ASP B 164 -103.90 59.79 REMARK 500 ASP C 128 17.36 -140.46 REMARK 500 GLU C 147 -11.44 -141.81 REMARK 500 ASP C 164 -109.58 52.08 REMARK 500 TRP C 170 113.17 -164.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 436 DISTANCE = 5.35 ANGSTROMS REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 E69 A 202 REMARK 615 E69 B 201 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 201 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 108 O REMARK 620 2 THR A 113 O 109.2 REMARK 620 3 LEU A 111 O 85.2 83.7 REMARK 620 4 HOH A 413 O 91.1 151.2 77.8 REMARK 620 5 HOH A 339 O 161.7 81.9 81.6 73.8 REMARK 620 6 HOH A 340 O 103.6 92.9 171.2 102.1 89.9 REMARK 620 N 1 2 3 4 5 REMARK 630 REMARK 630 MOLECULE TYPE: NULL REMARK 630 MOLECULE NAME: N~2~-[(3S)-4-({(2R)-1-[(4-CARBAMIMIDAMIDOBUTYL) REMARK 630 AMINO]-4-METHYL-1-OXOPENTAN-2-YL}AMINO)-3-HYDROXY-4-OXOBUTANOYL]-L REMARK 630 -ARGINYL-L-PROLINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 E69 A 202 REMARK 630 E69 B 201 REMARK 630 E69 C 201 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: DLE AG2 LMR ARG PRO NH2 REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE E69 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE E69 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE E69 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QMY RELATED DB: PDB DBREF 4QBB A 29 195 UNP P03305 POLG_FMDVO 29 195 DBREF 4QBB B 29 195 UNP P03305 POLG_FMDVO 29 195 DBREF 4QBB C 29 195 UNP P03305 POLG_FMDVO 29 195 SEQADV 4QBB VAL A 126 UNP P03305 MET 126 CLONING ARTIFACT SEQADV 4QBB VAL B 126 UNP P03305 MET 126 CLONING ARTIFACT SEQADV 4QBB VAL C 126 UNP P03305 MET 126 CLONING ARTIFACT SEQRES 1 A 167 MET GLU LEU THR LEU TYR ASN GLY GLU LYS LYS THR PHE SEQRES 2 A 167 TYR SER ARG PRO ASN ASN HIS ASP ASN CYS TRP LEU ASN SEQRES 3 A 167 ALA ILE LEU GLN LEU PHE ARG TYR VAL GLU GLU PRO PHE SEQRES 4 A 167 PHE ASP TRP VAL TYR SER SER PRO GLU ASN LEU THR LEU SEQRES 5 A 167 GLU ALA ILE LYS GLN LEU GLU ASP LEU THR GLY LEU GLU SEQRES 6 A 167 LEU HIS GLU GLY GLY PRO PRO ALA LEU VAL ILE TRP ASN SEQRES 7 A 167 ILE LYS HIS LEU LEU HIS THR GLY ILE GLY THR ALA SER SEQRES 8 A 167 ARG PRO SER GLU VAL CYS VAL VAL ASP GLY THR ASP MET SEQRES 9 A 167 CYS LEU ALA ASP PHE HIS ALA GLY ILE PHE LEU LYS GLY SEQRES 10 A 167 GLN GLU HIS ALA VAL PHE ALA CYS VAL THR SER ASN GLY SEQRES 11 A 167 TRP TYR ALA ILE ASP ASP GLU ASP PHE TYR PRO TRP THR SEQRES 12 A 167 PRO ASP PRO SER ASP VAL LEU VAL PHE VAL PRO TYR ASP SEQRES 13 A 167 GLN GLU PRO LEU ASN GLY GLU TRP LYS ALA LYS SEQRES 1 B 167 MET GLU LEU THR LEU TYR ASN GLY GLU LYS LYS THR PHE SEQRES 2 B 167 TYR SER ARG PRO ASN ASN HIS ASP ASN CYS TRP LEU ASN SEQRES 3 B 167 ALA ILE LEU GLN LEU PHE ARG TYR VAL GLU GLU PRO PHE SEQRES 4 B 167 PHE ASP TRP VAL TYR SER SER PRO GLU ASN LEU THR LEU SEQRES 5 B 167 GLU ALA ILE LYS GLN LEU GLU ASP LEU THR GLY LEU GLU SEQRES 6 B 167 LEU HIS GLU GLY GLY PRO PRO ALA LEU VAL ILE TRP ASN SEQRES 7 B 167 ILE LYS HIS LEU LEU HIS THR GLY ILE GLY THR ALA SER SEQRES 8 B 167 ARG PRO SER GLU VAL CYS VAL VAL ASP GLY THR ASP MET SEQRES 9 B 167 CYS LEU ALA ASP PHE HIS ALA GLY ILE PHE LEU LYS GLY SEQRES 10 B 167 GLN GLU HIS ALA VAL PHE ALA CYS VAL THR SER ASN GLY SEQRES 11 B 167 TRP TYR ALA ILE ASP ASP GLU ASP PHE TYR PRO TRP THR SEQRES 12 B 167 PRO ASP PRO SER ASP VAL LEU VAL PHE VAL PRO TYR ASP SEQRES 13 B 167 GLN GLU PRO LEU ASN GLY GLU TRP LYS ALA LYS SEQRES 1 C 167 MET GLU LEU THR LEU TYR ASN GLY GLU LYS LYS THR PHE SEQRES 2 C 167 TYR SER ARG PRO ASN ASN HIS ASP ASN CYS TRP LEU ASN SEQRES 3 C 167 ALA ILE LEU GLN LEU PHE ARG TYR VAL GLU GLU PRO PHE SEQRES 4 C 167 PHE ASP TRP VAL TYR SER SER PRO GLU ASN LEU THR LEU SEQRES 5 C 167 GLU ALA ILE LYS GLN LEU GLU ASP LEU THR GLY LEU GLU SEQRES 6 C 167 LEU HIS GLU GLY GLY PRO PRO ALA LEU VAL ILE TRP ASN SEQRES 7 C 167 ILE LYS HIS LEU LEU HIS THR GLY ILE GLY THR ALA SER SEQRES 8 C 167 ARG PRO SER GLU VAL CYS VAL VAL ASP GLY THR ASP MET SEQRES 9 C 167 CYS LEU ALA ASP PHE HIS ALA GLY ILE PHE LEU LYS GLY SEQRES 10 C 167 GLN GLU HIS ALA VAL PHE ALA CYS VAL THR SER ASN GLY SEQRES 11 C 167 TRP TYR ALA ILE ASP ASP GLU ASP PHE TYR PRO TRP THR SEQRES 12 C 167 PRO ASP PRO SER ASP VAL LEU VAL PHE VAL PRO TYR ASP SEQRES 13 C 167 GLN GLU PRO LEU ASN GLY GLU TRP LYS ALA LYS HET K A 201 1 HET E69 A 202 43 HET E69 B 201 43 HET E69 C 201 43 HET PO4 C 202 5 HETNAM K POTASSIUM ION HETNAM E69 N~2~-[(3S)-4-({(2R)-1-[(4-CARBAMIMIDAMIDOBUTYL)AMINO]- HETNAM 2 E69 4-METHYL-1-OXOPENTAN-2-YL}AMINO)-3-HYDROXY-4- HETNAM 3 E69 OXOBUTANOYL]-L-ARGINYL-L-PROLINAMIDE HETNAM PO4 PHOSPHATE ION FORMUL 4 K K 1+ FORMUL 5 E69 3(C26 H49 N11 O6) FORMUL 8 PO4 O4 P 3- FORMUL 9 HOH *376(H2 O) HELIX 1 1 ASN A 50 GLU A 64 1 15 HELIX 2 2 PHE A 68 SER A 73 1 6 HELIX 3 3 LEU A 78 GLY A 91 1 14 HELIX 4 4 PRO A 99 ILE A 107 1 9 HELIX 5 5 LYS A 108 LEU A 111 5 4 HELIX 6 6 CYS A 133 ALA A 135 5 3 HELIX 7 7 ASP A 173 SER A 175 5 3 HELIX 8 8 ASN B 50 GLU B 64 1 15 HELIX 9 9 PHE B 68 SER B 73 1 6 HELIX 10 10 LEU B 78 GLY B 91 1 14 HELIX 11 11 PRO B 99 LYS B 108 1 10 HELIX 12 12 HIS B 109 LEU B 111 5 3 HELIX 13 13 CYS B 133 ALA B 135 5 3 HELIX 14 14 ASP B 173 SER B 175 5 3 HELIX 15 15 ASN C 50 GLU C 64 1 15 HELIX 16 16 PHE C 68 SER C 73 1 6 HELIX 17 17 LEU C 78 GLY C 91 1 14 HELIX 18 18 PRO C 99 LYS C 108 1 10 HELIX 19 19 HIS C 109 LEU C 111 5 3 HELIX 20 20 CYS C 133 ALA C 135 5 3 HELIX 21 21 ASP C 173 SER C 175 5 3 SHEET 1 A 2 GLU A 30 THR A 32 0 SHEET 2 A 2 LYS A 38 THR A 40 -1 O LYS A 39 N LEU A 31 SHEET 1 B 7 ILE A 115 THR A 117 0 SHEET 2 B 7 VAL A 124 VAL A 126 1 O VAL A 124 N GLY A 116 SHEET 3 B 7 VAL A 177 PRO A 182 -1 O PHE A 180 N CYS A 125 SHEET 4 B 7 PHE A 137 LEU A 143 -1 N ILE A 141 O LEU A 178 SHEET 5 B 7 ALA A 149 CYS A 153 -1 O VAL A 150 N PHE A 142 SHEET 6 B 7 TYR A 160 ASP A 163 -1 O ILE A 162 N PHE A 151 SHEET 7 B 7 ASP A 166 PRO A 169 -1 O ASP A 166 N ASP A 163 SHEET 1 C 2 GLU B 30 THR B 32 0 SHEET 2 C 2 LYS B 38 THR B 40 -1 O LYS B 39 N LEU B 31 SHEET 1 D 7 ILE B 115 THR B 117 0 SHEET 2 D 7 VAL B 124 VAL B 126 1 O VAL B 124 N GLY B 116 SHEET 3 D 7 VAL B 177 PRO B 182 -1 O PHE B 180 N CYS B 125 SHEET 4 D 7 PHE B 137 LEU B 143 -1 N ILE B 141 O LEU B 178 SHEET 5 D 7 ALA B 149 CYS B 153 -1 O VAL B 150 N PHE B 142 SHEET 6 D 7 TYR B 160 ASP B 163 -1 O ILE B 162 N PHE B 151 SHEET 7 D 7 ASP B 166 PRO B 169 -1 O TYR B 168 N ALA B 161 SHEET 1 E 2 GLU C 30 THR C 32 0 SHEET 2 E 2 LYS C 38 THR C 40 -1 O LYS C 39 N LEU C 31 SHEET 1 F 7 ILE C 115 THR C 117 0 SHEET 2 F 7 VAL C 124 VAL C 126 1 O VAL C 126 N GLY C 116 SHEET 3 F 7 VAL C 177 PRO C 182 -1 O PHE C 180 N CYS C 125 SHEET 4 F 7 PHE C 137 LEU C 143 -1 N ILE C 141 O LEU C 178 SHEET 5 F 7 ALA C 149 THR C 155 -1 O VAL C 154 N HIS C 138 SHEET 6 F 7 GLY C 158 ASP C 163 -1 O ILE C 162 N PHE C 151 SHEET 7 F 7 ASP C 166 PRO C 169 -1 O ASP C 166 N ASP C 163 LINK O LYS A 108 K K A 201 1555 1555 2.68 LINK O THR A 113 K K A 201 1555 1555 2.76 LINK O LEU A 111 K K A 201 1555 1555 2.79 LINK K K A 201 O HOH A 413 1555 1555 2.74 LINK K K A 201 O HOH A 339 1555 1555 2.82 LINK K K A 201 O HOH A 340 1555 1555 2.88 LINK SG CYS A 51 C1 E69 A 202 1555 1555 1.81 LINK SG CYS B 51 C1 E69 B 201 1555 1555 1.81 LINK SG CYS C 51 C1 E69 C 201 1555 1555 1.84 SITE 1 AC1 6 LYS A 108 LEU A 111 THR A 113 HOH A 339 SITE 2 AC1 6 HOH A 340 HOH A 413 SITE 1 AC2 16 ASN A 46 ASP A 49 ASN A 50 CYS A 51 SITE 2 AC2 16 TRP A 52 GLU A 96 GLY A 97 GLY A 98 SITE 3 AC2 16 LEU A 143 GLU A 147 HIS A 148 ALA A 149 SITE 4 AC2 16 ASP A 163 ASP A 164 HOH A 403 HOH A 414 SITE 1 AC3 16 ASN B 46 ASP B 49 ASN B 50 CYS B 51 SITE 2 AC3 16 TRP B 52 GLU B 96 GLY B 97 GLY B 98 SITE 3 AC3 16 GLN B 146 GLU B 147 HIS B 148 HOH B 356 SITE 4 AC3 16 HOH B 360 SER C 119 ARG C 120 HOH C 328 SITE 1 AC4 16 SER B 119 ARG B 120 THR B 130 HOH B 370 SITE 2 AC4 16 ASN C 46 ASP C 49 ASN C 50 CYS C 51 SITE 3 AC4 16 TRP C 52 GLU C 96 GLY C 97 GLY C 98 SITE 4 AC4 16 LEU C 143 GLN C 146 GLU C 147 HIS C 148 SITE 1 AC5 5 TYR C 42 ARG C 61 SER C 73 HOH C 367 SITE 2 AC5 5 HOH C 397 CRYST1 45.808 110.682 56.774 90.00 98.12 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021830 0.000000 0.003115 0.00000 SCALE2 0.000000 0.009035 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017792 0.00000