HEADER TRANSFERASE 08-MAY-14 4QBF TITLE CRYSTAL STRUCTURE OF A STABLE ADENYLATE KINASE VARIANT AKLSE2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AK, ATP-AMP TRANSPHOSPHORYLASE, ATP/AMP PHOSPHOTRANSFERASE, COMPND 5 ADENYLATE MONOPHOSPHATE KINASE, SUPEROXIDE-INDUCIBLE PROTEIN 16, COMPND 6 SOI16; COMPND 7 EC: 2.7.4.3; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: ADK, BSU01370; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS ADENYLATE KINASE, ZINC FINGER, PHOSPHOTRANSFERASE ACTIVITY, ZINC KEYWDS 2 BINDING, ATP BINDING, PHOSPHORYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MOON,E.BAE REVDAT 3 08-NOV-23 4QBF 1 REMARK LINK REVDAT 2 25-DEC-19 4QBF 1 JRNL SEQADV REVDAT 1 25-JUN-14 4QBF 0 JRNL AUTH S.MOON,R.M.BANNEN,T.J.RUTKOSKI,G.N.PHILLIPS JR.,E.BAE JRNL TITL EFFECTIVENESS AND LIMITATIONS OF LOCAL STRUCTURAL ENTROPY JRNL TITL 2 OPTIMIZATION IN THE THERMAL STABILIZATION OF MESOPHILIC AND JRNL TITL 3 THERMOPHILIC ADENYLATE KINASES. JRNL REF PROTEINS V. 82 2631 2014 JRNL REFN ESSN 1097-0134 JRNL PMID 24931334 JRNL DOI 10.1002/PROT.24627 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 18376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 992 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1249 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1674 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.95000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 1.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.774 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1761 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1689 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2389 ; 2.331 ; 2.036 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3903 ; 2.551 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 215 ; 5.748 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 77 ;38.278 ;25.065 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 316 ;12.949 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;12.165 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 270 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1937 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 357 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 863 ; 1.745 ; 1.640 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 862 ; 1.705 ; 1.638 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1077 ; 2.469 ; 2.450 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1078 ; 2.473 ; 2.452 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 898 ; 3.168 ; 2.128 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 899 ; 3.167 ; 2.128 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1313 ; 5.000 ; 3.039 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2101 ; 7.403 ;15.287 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2053 ; 7.354 ;14.773 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): -15.6745 -2.7020 -5.8734 REMARK 3 T TENSOR REMARK 3 T11: 0.0508 T22: 0.0826 REMARK 3 T33: 0.0167 T12: -0.0225 REMARK 3 T13: 0.0188 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 1.7693 L22: 4.2160 REMARK 3 L33: 2.6337 L12: -0.4332 REMARK 3 L13: -1.2737 L23: -0.5897 REMARK 3 S TENSOR REMARK 3 S11: -0.1439 S12: -0.1521 S13: -0.0087 REMARK 3 S21: 0.0388 S22: 0.1091 S23: 0.1090 REMARK 3 S31: 0.1081 S32: -0.0769 S33: 0.0347 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 127 A 164 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7289 3.9966 -0.9397 REMARK 3 T TENSOR REMARK 3 T11: 0.0561 T22: 0.0591 REMARK 3 T33: 0.0243 T12: 0.0021 REMARK 3 T13: 0.0155 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.9614 L22: 1.5783 REMARK 3 L33: 3.7434 L12: -0.0127 REMARK 3 L13: 1.1102 L23: 1.9525 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: -0.1683 S13: 0.0924 REMARK 3 S21: 0.0024 S22: 0.0433 S23: -0.1421 REMARK 3 S31: 0.0601 S32: -0.1234 S33: -0.0711 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 30 REMARK 3 RESIDUE RANGE : A 61 A 126 REMARK 3 RESIDUE RANGE : A 165 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): -8.3331 6.6233 -20.2595 REMARK 3 T TENSOR REMARK 3 T11: 0.0096 T22: 0.0140 REMARK 3 T33: 0.0216 T12: 0.0026 REMARK 3 T13: -0.0016 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.7799 L22: 1.2430 REMARK 3 L33: 0.8277 L12: 0.3565 REMARK 3 L13: 0.2004 L23: 0.3063 REMARK 3 S TENSOR REMARK 3 S11: 0.0273 S12: 0.0194 S13: 0.0815 REMARK 3 S21: -0.0509 S22: -0.0714 S23: 0.1504 REMARK 3 S31: 0.0203 S32: -0.0549 S33: 0.0441 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 302 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): -3.769 1.937 -12.402 REMARK 3 T TENSOR REMARK 3 T11: 0.0304 T22: 0.0304 REMARK 3 T33: 0.0304 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4QBF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000085842. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DCM SI (111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19418 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4MKG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9M AMMONIUM CITRATE PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.64650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.66400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.60100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.66400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.64650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.60100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 217 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 70 O PHE A 141 1455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 88 CB - CG - CD ANGL. DEV. = -16.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 73 35.60 -85.48 REMARK 500 ASN A 142 67.39 -158.99 REMARK 500 GLN A 198 57.15 -95.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 130 SG REMARK 620 2 CYS A 133 SG 111.6 REMARK 620 3 CYS A 150 SG 105.6 113.2 REMARK 620 4 ASP A 153 OD2 116.8 100.7 109.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AP5 A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QBG RELATED DB: PDB REMARK 900 RELATED ID: 4QBH RELATED DB: PDB REMARK 900 RELATED ID: 4QBI RELATED DB: PDB DBREF 4QBF A 1 217 UNP P16304 KAD_BACSU 1 217 SEQADV 4QBF ILE A 3 UNP P16304 LEU 3 ENGINEERED MUTATION SEQADV 4QBF ALA A 17 UNP P16304 GLY 17 ENGINEERED MUTATION SEQADV 4QBF LYS A 23 UNP P16304 ASP 23 ENGINEERED MUTATION SEQADV 4QBF ARG A 69 UNP P16304 LYS 69 ENGINEERED MUTATION SEQADV 4QBF SER A 73 UNP P16304 GLY 73 ENGINEERED MUTATION SEQADV 4QBF SER A 75 UNP P16304 ASP 75 ENGINEERED MUTATION SEQADV 4QBF LEU A 99 UNP P16304 ILE 99 ENGINEERED MUTATION SEQADV 4QBF MET A 103 UNP P16304 TYR 103 ENGINEERED MUTATION SEQADV 4QBF ARG A 105 UNP P16304 LYS 105 ENGINEERED MUTATION SEQADV 4QBF GLN A 114 UNP P16304 GLU 114 ENGINEERED MUTATION SEQADV 4QBF GLU A 118 UNP P16304 ASP 118 ENGINEERED MUTATION SEQADV 4QBF GLU A 119 UNP P16304 VAL 119 ENGINEERED MUTATION SEQADV 4QBF ILE A 121 UNP P16304 MET 121 ENGINEERED MUTATION SEQADV 4QBF ALA A 122 UNP P16304 GLU 122 ENGINEERED MUTATION SEQADV 4QBF THR A 169 UNP P16304 SER 169 ENGINEERED MUTATION SEQADV 4QBF ALA A 180 UNP P16304 GLN 180 ENGINEERED MUTATION SEQADV 4QBF ALA A 184 UNP P16304 ASP 184 ENGINEERED MUTATION SEQADV 4QBF ASP A 187 UNP P16304 SER 187 ENGINEERED MUTATION SEQADV 4QBF SER A 188 UNP P16304 GLU 188 ENGINEERED MUTATION SEQADV 4QBF GLU A 190 UNP P16304 GLY 190 ENGINEERED MUTATION SEQADV 4QBF VAL A 191 UNP P16304 TYR 191 ENGINEERED MUTATION SEQADV 4QBF VAL A 193 UNP P16304 ALA 193 ENGINEERED MUTATION SEQADV 4QBF PHE A 205 UNP P16304 TYR 205 ENGINEERED MUTATION SEQADV 4QBF VAL A 210 UNP P16304 ASP 210 ENGINEERED MUTATION SEQADV 4QBF ILE A 211 UNP P16304 LEU 211 ENGINEERED MUTATION SEQADV 4QBF GLN A 217 UNP P16304 LYS 217 ENGINEERED MUTATION SEQRES 1 A 217 MET ASN ILE VAL LEU MET GLY LEU PRO GLY ALA GLY LYS SEQRES 2 A 217 GLY THR GLN ALA GLU ARG ILE VAL GLU LYS TYR GLY ILE SEQRES 3 A 217 PRO HIS ILE SER THR GLY ASP MET PHE ARG ALA ALA MET SEQRES 4 A 217 LYS GLU GLU THR PRO LEU GLY LEU GLU ALA LYS SER TYR SEQRES 5 A 217 ILE ASP LYS GLY GLU LEU VAL PRO ASP GLU VAL THR ILE SEQRES 6 A 217 GLY ILE VAL ARG GLU ARG LEU SER LYS SER ASP CYS GLU SEQRES 7 A 217 ARG GLY PHE LEU LEU ASP GLY PHE PRO ARG THR VAL ALA SEQRES 8 A 217 GLN ALA GLU ALA LEU GLU GLU LEU LEU GLU GLU MET GLY SEQRES 9 A 217 ARG PRO ILE ASP TYR VAL ILE ASN ILE GLN VAL ASP LYS SEQRES 10 A 217 GLU GLU LEU ILE ALA ARG LEU THR GLY ARG ARG ILE CYS SEQRES 11 A 217 SER VAL CYS GLY THR THR TYR HIS LEU VAL PHE ASN PRO SEQRES 12 A 217 PRO LYS THR PRO GLY ILE CYS ASP LYS ASP GLY GLY GLU SEQRES 13 A 217 LEU TYR GLN ARG ALA ASP ASP ASN GLU GLU THR VAL THR SEQRES 14 A 217 LYS ARG LEU GLU VAL ASN MET LYS GLN THR ALA PRO LEU SEQRES 15 A 217 LEU ALA PHE TYR ASP SER LYS GLU VAL LEU VAL ASN VAL SEQRES 16 A 217 ASN GLY GLN GLN ASP ILE GLN ASP VAL PHE ALA ASP VAL SEQRES 17 A 217 LYS VAL ILE LEU GLY GLY LEU LYS GLN HET ZN A 301 1 HET AP5 A 302 60 HETNAM ZN ZINC ION HETNAM AP5 BIS(ADENOSINE)-5'-PENTAPHOSPHATE FORMUL 2 ZN ZN 2+ FORMUL 3 AP5 C20 H29 N10 O22 P5 FORMUL 4 HOH *144(H2 O) HELIX 1 1 GLY A 12 GLY A 25 1 14 HELIX 2 2 THR A 31 GLU A 42 1 12 HELIX 3 3 THR A 43 LYS A 55 1 13 HELIX 4 4 PRO A 60 LEU A 72 1 13 HELIX 5 5 LYS A 74 ARG A 79 5 6 HELIX 6 6 THR A 89 GLY A 104 1 16 HELIX 7 7 ASP A 116 GLY A 126 1 11 HELIX 8 8 ARG A 160 ASP A 163 5 4 HELIX 9 9 ASN A 164 LYS A 189 1 26 HELIX 10 10 ASP A 200 GLY A 214 1 15 SHEET 1 A 5 HIS A 28 SER A 30 0 SHEET 2 A 5 PHE A 81 ASP A 84 1 O ASP A 84 N ILE A 29 SHEET 3 A 5 ASN A 2 MET A 6 1 N ILE A 3 O LEU A 83 SHEET 4 A 5 TYR A 109 GLN A 114 1 O ILE A 111 N MET A 6 SHEET 5 A 5 LEU A 192 ASN A 196 1 O VAL A 195 N GLN A 114 SHEET 1 B 3 THR A 136 HIS A 138 0 SHEET 2 B 3 ARG A 127 CYS A 130 -1 N ARG A 128 O TYR A 137 SHEET 3 B 3 LEU A 157 TYR A 158 -1 O TYR A 158 N ILE A 129 LINK SG CYS A 130 ZN ZN A 301 1555 1555 2.33 LINK SG CYS A 133 ZN ZN A 301 1555 1555 2.32 LINK SG CYS A 150 ZN ZN A 301 1555 1555 2.35 LINK OD2 ASP A 153 ZN ZN A 301 1555 1555 2.14 CISPEP 1 PHE A 86 PRO A 87 0 -4.41 SITE 1 AC1 4 CYS A 130 CYS A 133 CYS A 150 ASP A 153 SITE 1 AC2 37 PRO A 9 GLY A 10 ALA A 11 GLY A 12 SITE 2 AC2 37 LYS A 13 GLY A 14 THR A 15 THR A 31 SITE 3 AC2 37 ARG A 36 ILE A 53 GLU A 57 VAL A 59 SITE 4 AC2 37 THR A 64 ARG A 69 GLU A 70 GLY A 85 SITE 5 AC2 37 PHE A 86 ARG A 88 GLN A 92 ARG A 123 SITE 6 AC2 37 LEU A 124 ARG A 127 TYR A 137 HIS A 138 SITE 7 AC2 37 PHE A 141 ARG A 160 ARG A 171 GLN A 199 SITE 8 AC2 37 ILE A 201 HOH A 418 HOH A 424 HOH A 441 SITE 9 AC2 37 HOH A 443 HOH A 444 HOH A 445 HOH A 490 SITE 10 AC2 37 HOH A 534 CRYST1 39.293 47.202 109.328 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025450 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021186 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009147 0.00000