HEADER TRANSFERASE 08-MAY-14 4QBI TITLE CRYSTAL STRUCTURE OF A STABLE ADENYLATE KINASE VARIANT AKLSE6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AK, ATP-AMP TRANSPHOSPHORYLASE, ATP/AMP PHOSPHOTRANSFERASE, COMPND 5 ADENYLATE MONOPHOSPHATE KINASE; COMPND 6 EC: 2.7.4.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: ADK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADENYLATE KINASE, ZINC FINGER, TRANSFERASE ACTIVITY, KEYWDS 2 PHOSPHOTRANSFERASE ACTIVITY, ZINC BINDING, ATP BINDING, KEYWDS 3 PHOSPHORYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MOON,E.BAE REVDAT 3 08-NOV-23 4QBI 1 REMARK LINK REVDAT 2 25-DEC-19 4QBI 1 JRNL SEQADV REVDAT 1 25-JUN-14 4QBI 0 JRNL AUTH S.MOON,R.M.BANNEN,T.J.RUTKOSKI,G.N.PHILLIPS JR.,E.BAE JRNL TITL EFFECTIVENESS AND LIMITATIONS OF LOCAL STRUCTURAL ENTROPY JRNL TITL 2 OPTIMIZATION IN THE THERMAL STABILIZATION OF MESOPHILIC AND JRNL TITL 3 THERMOPHILIC ADENYLATE KINASES. JRNL REF PROTEINS V. 82 2631 2014 JRNL REFN ESSN 1097-0134 JRNL PMID 24931334 JRNL DOI 10.1002/PROT.24627 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 52020 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2780 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3778 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3383 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 537 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.68000 REMARK 3 B22 (A**2) : -0.78000 REMARK 3 B33 (A**2) : 1.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.36000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.856 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3557 ; 0.025 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3409 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4810 ; 2.428 ; 2.030 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7850 ; 2.688 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 429 ; 5.787 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;36.484 ;24.083 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 643 ;12.964 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;13.015 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 516 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3954 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 775 ; 0.012 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1722 ; 1.745 ; 1.787 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1721 ; 1.745 ; 1.784 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2149 ; 2.428 ; 2.671 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2150 ; 2.430 ; 2.673 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1835 ; 3.292 ; 2.137 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1836 ; 3.291 ; 2.136 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2662 ; 4.857 ; 3.050 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4141 ; 9.129 ;17.275 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4142 ; 9.128 ;17.273 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 60 REMARK 3 RESIDUE RANGE : B 31 B 60 REMARK 3 ORIGIN FOR THE GROUP (A): -13.6145 -9.7512 -26.0922 REMARK 3 T TENSOR REMARK 3 T11: 0.0308 T22: 0.0375 REMARK 3 T33: 0.0885 T12: 0.0211 REMARK 3 T13: -0.0158 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.3243 L22: 0.3624 REMARK 3 L33: 1.0899 L12: 0.0733 REMARK 3 L13: 0.3661 L23: -0.3671 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: 0.0204 S13: 0.0775 REMARK 3 S21: -0.0241 S22: 0.0217 S23: 0.0592 REMARK 3 S31: -0.0097 S32: -0.0313 S33: 0.0070 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 127 A 164 REMARK 3 RESIDUE RANGE : B 127 B 164 REMARK 3 ORIGIN FOR THE GROUP (A): -19.3461 -28.5870 -21.5967 REMARK 3 T TENSOR REMARK 3 T11: 0.0103 T22: 0.0328 REMARK 3 T33: 0.0692 T12: 0.0011 REMARK 3 T13: 0.0010 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.4886 L22: 0.1177 REMARK 3 L33: 1.0920 L12: 0.0962 REMARK 3 L13: 0.4151 L23: 0.2091 REMARK 3 S TENSOR REMARK 3 S11: 0.0295 S12: 0.0219 S13: -0.0847 REMARK 3 S21: -0.0038 S22: 0.0142 S23: -0.0198 REMARK 3 S31: -0.0011 S32: -0.0780 S33: -0.0437 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 30 REMARK 3 RESIDUE RANGE : B 1 B 30 REMARK 3 RESIDUE RANGE : A 61 A 126 REMARK 3 RESIDUE RANGE : B 61 B 126 REMARK 3 RESIDUE RANGE : A 165 A 217 REMARK 3 RESIDUE RANGE : B 165 B 214 REMARK 3 ORIGIN FOR THE GROUP (A): -6.6878 -16.3850 -9.9945 REMARK 3 T TENSOR REMARK 3 T11: 0.0179 T22: 0.0190 REMARK 3 T33: 0.0459 T12: 0.0020 REMARK 3 T13: 0.0161 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.3761 L22: 0.2974 REMARK 3 L33: 0.5756 L12: -0.0208 REMARK 3 L13: 0.1158 L23: 0.0699 REMARK 3 S TENSOR REMARK 3 S11: -0.0118 S12: -0.0208 S13: 0.0158 REMARK 3 S21: 0.0418 S22: 0.0101 S23: 0.0097 REMARK 3 S31: -0.0443 S32: -0.0113 S33: 0.0017 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 303 A 303 REMARK 3 RESIDUE RANGE : B 303 B 303 REMARK 3 ORIGIN FOR THE GROUP (A): -9.1632 -21.2377 -18.3199 REMARK 3 T TENSOR REMARK 3 T11: 0.0157 T22: 0.0509 REMARK 3 T33: 0.0747 T12: 0.0006 REMARK 3 T13: 0.0060 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.2179 L22: 0.3491 REMARK 3 L33: 1.1970 L12: 0.0280 REMARK 3 L13: 0.2698 L23: 0.1062 REMARK 3 S TENSOR REMARK 3 S11: 0.0214 S12: 0.0733 S13: -0.0289 REMARK 3 S21: -0.0213 S22: 0.0212 S23: -0.0203 REMARK 3 S31: 0.0098 S32: 0.1284 S33: -0.0426 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4QBI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000085845. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DCM SI (111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54822 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ZIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26.5% (W/V) POLYETHYLENE GLYCOL 4000, REMARK 280 150MM MAGNESIUM ACETATE, 100MM SODIUM CACODYLATE PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.25600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B 215 REMARK 465 LYS B 216 REMARK 465 ARG B 217 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 105 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 171 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 LEU A 211 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG B 105 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP B 114 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 118 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP B 151 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG B 193 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 209 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 142 64.39 -163.34 REMARK 500 ASP A 163 46.59 -89.76 REMARK 500 GLU A 198 56.05 -97.15 REMARK 500 HIS B 142 68.37 -161.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 130 SG REMARK 620 2 CYS A 133 SG 114.9 REMARK 620 3 CYS A 150 SG 106.3 103.9 REMARK 620 4 CYS A 153 SG 96.6 119.3 115.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 AP5 A 303 O2G REMARK 620 2 HOH A 674 O 177.7 REMARK 620 3 HOH A 675 O 84.0 95.8 REMARK 620 4 HOH A 676 O 84.8 92.8 92.6 REMARK 620 5 HOH A 677 O 95.5 86.8 89.8 177.6 REMARK 620 6 HOH A 678 O 87.3 93.0 170.7 90.1 87.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 130 SG REMARK 620 2 CYS B 133 SG 113.1 REMARK 620 3 CYS B 150 SG 104.9 106.4 REMARK 620 4 CYS B 153 SG 98.8 117.7 115.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 AP5 B 303 O2B REMARK 620 2 AP5 B 303 O2G 96.4 REMARK 620 3 HOH B 652 O 85.0 94.0 REMARK 620 4 HOH B 653 O 103.4 159.6 92.6 REMARK 620 5 HOH B 654 O 175.8 80.5 92.4 80.0 REMARK 620 6 HOH B 655 O 89.1 88.1 173.9 87.3 93.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AP5 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AP5 B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QBF RELATED DB: PDB REMARK 900 RELATED ID: 4QBG RELATED DB: PDB REMARK 900 RELATED ID: 4QBH RELATED DB: PDB DBREF 4QBI A 1 217 UNP P27142 KAD_GEOSE 1 217 DBREF 4QBI B 1 217 UNP P27142 KAD_GEOSE 1 217 SEQADV 4QBI GLU A 22 UNP P27142 ALA 22 ENGINEERED MUTATION SEQADV 4QBI GLY A 73 UNP P27142 SER 73 ENGINEERED MUTATION SEQADV 4QBI GLU A 78 UNP P27142 GLN 78 ENGINEERED MUTATION SEQADV 4QBI ARG A 79 UNP P27142 ASN 79 ENGINEERED MUTATION SEQADV 4QBI GLU A 98 UNP P27142 THR 98 ENGINEERED MUTATION SEQADV 4QBI ILE A 99 UNP P27142 MET 99 ENGINEERED MUTATION SEQADV 4QBI GLU A 101 UNP P27142 ALA 101 ENGINEERED MUTATION SEQADV 4QBI ILE A 107 UNP P27142 LEU 107 ENGINEERED MUTATION SEQADV 4QBI GLU A 166 UNP P27142 ALA 166 ENGINEERED MUTATION SEQADV 4QBI LYS A 170 UNP P27142 ASN 170 ENGINEERED MUTATION SEQADV 4QBI LEU A 183 UNP P27142 VAL 183 ENGINEERED MUTATION SEQADV 4QBI VAL A 195 UNP P27142 ILE 195 ENGINEERED MUTATION SEQADV 4QBI ILE A 201 UNP P27142 MET 201 ENGINEERED MUTATION SEQADV 4QBI VAL A 208 UNP P27142 ILE 208 ENGINEERED MUTATION SEQADV 4QBI LYS A 216 UNP P27142 ALA 216 ENGINEERED MUTATION SEQADV 4QBI GLU B 22 UNP P27142 ALA 22 ENGINEERED MUTATION SEQADV 4QBI GLY B 73 UNP P27142 SER 73 ENGINEERED MUTATION SEQADV 4QBI GLU B 78 UNP P27142 GLN 78 ENGINEERED MUTATION SEQADV 4QBI ARG B 79 UNP P27142 ASN 79 ENGINEERED MUTATION SEQADV 4QBI GLU B 98 UNP P27142 THR 98 ENGINEERED MUTATION SEQADV 4QBI ILE B 99 UNP P27142 MET 99 ENGINEERED MUTATION SEQADV 4QBI GLU B 101 UNP P27142 ALA 101 ENGINEERED MUTATION SEQADV 4QBI ILE B 107 UNP P27142 LEU 107 ENGINEERED MUTATION SEQADV 4QBI GLU B 166 UNP P27142 ALA 166 ENGINEERED MUTATION SEQADV 4QBI LYS B 170 UNP P27142 ASN 170 ENGINEERED MUTATION SEQADV 4QBI LEU B 183 UNP P27142 VAL 183 ENGINEERED MUTATION SEQADV 4QBI VAL B 195 UNP P27142 ILE 195 ENGINEERED MUTATION SEQADV 4QBI ILE B 201 UNP P27142 MET 201 ENGINEERED MUTATION SEQADV 4QBI VAL B 208 UNP P27142 ILE 208 ENGINEERED MUTATION SEQADV 4QBI LYS B 216 UNP P27142 ALA 216 ENGINEERED MUTATION SEQRES 1 A 217 MET ASN LEU VAL LEU MET GLY LEU PRO GLY ALA GLY LYS SEQRES 2 A 217 GLY THR GLN ALA GLU LYS ILE VAL GLU ALA TYR GLY ILE SEQRES 3 A 217 PRO HIS ILE SER THR GLY ASP MET PHE ARG ALA ALA MET SEQRES 4 A 217 LYS GLU GLY THR PRO LEU GLY LEU GLN ALA LYS GLN TYR SEQRES 5 A 217 MET ASP ARG GLY ASP LEU VAL PRO ASP GLU VAL THR ILE SEQRES 6 A 217 GLY ILE VAL ARG GLU ARG LEU GLY LYS ASP ASP CYS GLU SEQRES 7 A 217 ARG GLY PHE LEU LEU ASP GLY PHE PRO ARG THR VAL ALA SEQRES 8 A 217 GLN ALA GLU ALA LEU GLU GLU ILE LEU GLU ASP ILE GLY SEQRES 9 A 217 ARG LYS ILE ASP TYR VAL ILE HIS ILE ASP VAL ARG GLN SEQRES 10 A 217 ASP VAL LEU MET GLU ARG LEU THR GLY ARG ARG ILE CYS SEQRES 11 A 217 ARG ASN CYS GLY ALA THR TYR HIS LEU ILE PHE HIS PRO SEQRES 12 A 217 PRO ALA LYS PRO GLY VAL CYS ASP LYS CYS GLY GLY GLU SEQRES 13 A 217 LEU TYR GLN ARG ALA ASP ASP ASN GLU GLU THR VAL ALA SEQRES 14 A 217 LYS ARG LEU GLU VAL ASN MET LYS GLN MET LYS PRO LEU SEQRES 15 A 217 LEU ASP PHE TYR GLU GLN LYS GLY TYR LEU ARG ASN VAL SEQRES 16 A 217 ASN GLY GLU GLN ASP ILE GLU LYS VAL PHE ALA ASP VAL SEQRES 17 A 217 ARG GLU LEU LEU GLY GLY LEU LYS ARG SEQRES 1 B 217 MET ASN LEU VAL LEU MET GLY LEU PRO GLY ALA GLY LYS SEQRES 2 B 217 GLY THR GLN ALA GLU LYS ILE VAL GLU ALA TYR GLY ILE SEQRES 3 B 217 PRO HIS ILE SER THR GLY ASP MET PHE ARG ALA ALA MET SEQRES 4 B 217 LYS GLU GLY THR PRO LEU GLY LEU GLN ALA LYS GLN TYR SEQRES 5 B 217 MET ASP ARG GLY ASP LEU VAL PRO ASP GLU VAL THR ILE SEQRES 6 B 217 GLY ILE VAL ARG GLU ARG LEU GLY LYS ASP ASP CYS GLU SEQRES 7 B 217 ARG GLY PHE LEU LEU ASP GLY PHE PRO ARG THR VAL ALA SEQRES 8 B 217 GLN ALA GLU ALA LEU GLU GLU ILE LEU GLU ASP ILE GLY SEQRES 9 B 217 ARG LYS ILE ASP TYR VAL ILE HIS ILE ASP VAL ARG GLN SEQRES 10 B 217 ASP VAL LEU MET GLU ARG LEU THR GLY ARG ARG ILE CYS SEQRES 11 B 217 ARG ASN CYS GLY ALA THR TYR HIS LEU ILE PHE HIS PRO SEQRES 12 B 217 PRO ALA LYS PRO GLY VAL CYS ASP LYS CYS GLY GLY GLU SEQRES 13 B 217 LEU TYR GLN ARG ALA ASP ASP ASN GLU GLU THR VAL ALA SEQRES 14 B 217 LYS ARG LEU GLU VAL ASN MET LYS GLN MET LYS PRO LEU SEQRES 15 B 217 LEU ASP PHE TYR GLU GLN LYS GLY TYR LEU ARG ASN VAL SEQRES 16 B 217 ASN GLY GLU GLN ASP ILE GLU LYS VAL PHE ALA ASP VAL SEQRES 17 B 217 ARG GLU LEU LEU GLY GLY LEU LYS ARG HET ZN A 301 1 HET MG A 302 1 HET AP5 A 303 57 HET ZN B 301 1 HET MG B 302 1 HET AP5 B 303 57 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM AP5 BIS(ADENOSINE)-5'-PENTAPHOSPHATE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 AP5 2(C20 H29 N10 O22 P5) FORMUL 9 HOH *537(H2 O) HELIX 1 1 GLY A 12 GLY A 25 1 14 HELIX 2 2 THR A 31 GLY A 42 1 12 HELIX 3 3 THR A 43 GLY A 56 1 14 HELIX 4 4 PRO A 60 GLY A 73 1 14 HELIX 5 5 LYS A 74 GLU A 78 5 5 HELIX 6 6 THR A 89 GLY A 104 1 16 HELIX 7 7 ARG A 116 ASP A 118 5 3 HELIX 8 8 VAL A 119 GLY A 126 1 8 HELIX 9 9 ASN A 164 GLY A 190 1 27 HELIX 10 10 ASP A 200 GLY A 213 1 14 HELIX 11 11 GLY B 12 GLY B 25 1 14 HELIX 12 12 THR B 31 GLY B 42 1 12 HELIX 13 13 THR B 43 ASP B 54 1 12 HELIX 14 14 PRO B 60 GLY B 73 1 14 HELIX 15 15 LYS B 74 GLU B 78 5 5 HELIX 16 16 THR B 89 ILE B 103 1 15 HELIX 17 17 ARG B 116 THR B 125 1 10 HELIX 18 18 ASN B 164 LYS B 189 1 26 HELIX 19 19 ASP B 200 GLY B 213 1 14 SHEET 1 A 5 HIS A 28 SER A 30 0 SHEET 2 A 5 PHE A 81 ASP A 84 1 O LEU A 82 N ILE A 29 SHEET 3 A 5 ASN A 2 MET A 6 1 N LEU A 5 O LEU A 83 SHEET 4 A 5 TYR A 109 ASP A 114 1 O ILE A 111 N VAL A 4 SHEET 5 A 5 LEU A 192 ASN A 196 1 O VAL A 195 N HIS A 112 SHEET 1 B 3 THR A 136 HIS A 138 0 SHEET 2 B 3 ARG A 127 CYS A 130 -1 N ARG A 128 O TYR A 137 SHEET 3 B 3 LEU A 157 TYR A 158 -1 O TYR A 158 N ILE A 129 SHEET 1 C 5 HIS B 28 SER B 30 0 SHEET 2 C 5 PHE B 81 ASP B 84 1 O LEU B 82 N ILE B 29 SHEET 3 C 5 ASN B 2 MET B 6 1 N LEU B 3 O LEU B 83 SHEET 4 C 5 TYR B 109 ASP B 114 1 O ILE B 111 N VAL B 4 SHEET 5 C 5 LEU B 192 ASN B 196 1 O VAL B 195 N ASP B 114 SHEET 1 D 3 THR B 136 HIS B 138 0 SHEET 2 D 3 ARG B 127 CYS B 130 -1 N ARG B 128 O TYR B 137 SHEET 3 D 3 LEU B 157 TYR B 158 -1 O TYR B 158 N ILE B 129 LINK SG CYS A 130 ZN ZN A 301 1555 1555 2.41 LINK SG CYS A 133 ZN ZN A 301 1555 1555 2.43 LINK SG CYS A 150 ZN ZN A 301 1555 1555 2.45 LINK SG CYS A 153 ZN ZN A 301 1555 1555 2.32 LINK MG MG A 302 O2G AP5 A 303 1555 1555 2.47 LINK MG MG A 302 O HOH A 674 1555 1555 2.16 LINK MG MG A 302 O HOH A 675 1555 1555 2.13 LINK MG MG A 302 O HOH A 676 1555 1555 2.24 LINK MG MG A 302 O HOH A 677 1555 1555 1.98 LINK MG MG A 302 O HOH A 678 1555 1555 2.17 LINK SG CYS B 130 ZN ZN B 301 1555 1555 2.40 LINK SG CYS B 133 ZN ZN B 301 1555 1555 2.37 LINK SG CYS B 150 ZN ZN B 301 1555 1555 2.47 LINK SG CYS B 153 ZN ZN B 301 1555 1555 2.38 LINK MG MG B 302 O2B AP5 B 303 1555 1555 2.26 LINK MG MG B 302 O2G AP5 B 303 1555 1555 2.31 LINK MG MG B 302 O HOH B 652 1555 1555 2.19 LINK MG MG B 302 O HOH B 653 1555 1555 2.11 LINK MG MG B 302 O HOH B 654 1555 1555 2.13 LINK MG MG B 302 O HOH B 655 1555 1555 2.16 CISPEP 1 PHE A 86 PRO A 87 0 -2.75 CISPEP 2 PHE B 86 PRO B 87 0 -5.22 SITE 1 AC1 4 CYS A 130 CYS A 133 CYS A 150 CYS A 153 SITE 1 AC2 6 AP5 A 303 HOH A 674 HOH A 675 HOH A 676 SITE 2 AC2 6 HOH A 677 HOH A 678 SITE 1 AC3 40 LEU A 8 PRO A 9 GLY A 10 ALA A 11 SITE 2 AC3 40 GLY A 12 LYS A 13 GLY A 14 THR A 15 SITE 3 AC3 40 THR A 31 GLY A 32 ARG A 36 MET A 53 SITE 4 AC3 40 ASP A 57 LEU A 58 VAL A 59 GLY A 85 SITE 5 AC3 40 PHE A 86 ARG A 88 GLN A 92 ARG A 123 SITE 6 AC3 40 ARG A 127 THR A 136 TYR A 137 HIS A 138 SITE 7 AC3 40 PHE A 141 ARG A 160 ARG A 171 GLY A 197 SITE 8 AC3 40 GLN A 199 ILE A 201 MG A 302 HOH A 413 SITE 9 AC3 40 HOH A 425 HOH A 428 HOH A 440 HOH A 483 SITE 10 AC3 40 HOH A 515 HOH A 675 HOH A 676 HOH A 678 SITE 1 AC4 4 CYS B 130 CYS B 133 CYS B 150 CYS B 153 SITE 1 AC5 5 AP5 B 303 HOH B 652 HOH B 653 HOH B 654 SITE 2 AC5 5 HOH B 655 SITE 1 AC6 37 PRO B 9 GLY B 10 ALA B 11 GLY B 12 SITE 2 AC6 37 LYS B 13 GLY B 14 THR B 15 THR B 31 SITE 3 AC6 37 GLY B 32 ARG B 36 ASP B 57 VAL B 59 SITE 4 AC6 37 THR B 64 GLY B 85 PHE B 86 ARG B 88 SITE 5 AC6 37 GLN B 92 ARG B 123 ARG B 127 THR B 136 SITE 6 AC6 37 TYR B 137 HIS B 138 PHE B 141 ARG B 160 SITE 7 AC6 37 ARG B 171 GLN B 199 ILE B 201 MG B 302 SITE 8 AC6 37 HOH B 410 HOH B 412 HOH B 427 HOH B 437 SITE 9 AC6 37 HOH B 440 HOH B 462 HOH B 652 HOH B 654 SITE 10 AC6 37 HOH B 655 CRYST1 36.814 76.512 85.130 90.00 90.20 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027164 0.000000 0.000094 0.00000 SCALE2 0.000000 0.013070 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011747 0.00000