HEADER TRANSCRIPTION 08-MAY-14 4QBM TITLE CRYSTAL STRUCTURE OF HUMAN BAZ2A BROMODOMAIN IN COMPLEX WITH A TITLE 2 DIACETYLATED HISTONE 4 PEPTIDE (H4K16ACK20AC) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 2A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1796-1899; COMPND 5 SYNONYM: TRANSCRIPTION TERMINATION FACTOR I-INTERACTING PROTEIN 5, COMPND 6 TTF-I-INTERACTING PROTEIN 5, TIP5, HWALP3; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H4 PEPTIDE WITH SEQUENCE GLY-ALA-LYS(AC)-ARG-HIS- COMPND 10 ARG-LYS(AC)-VAL-LEU; COMPND 11 CHAIN: C, D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BAZ2A, CB1_000449039, KIAA0314, TIP5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 2A, TRANSCRIPTION KEYWDS 2 TERMINATION FACTOR I-INTERACTING PROTEIN 5, TIP5, BROMODOMAIN, KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR C.TALLANT,G.NUNEZ-ALONSO,S.PICAUD,P.FILIPPAKOPOULOS,T.KROJER, AUTHOR 2 E.WILLIAMS,F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,S.KNAPP, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 20-NOV-24 4QBM 1 REMARK REVDAT 4 06-DEC-23 4QBM 1 REMARK REVDAT 3 20-SEP-23 4QBM 1 REMARK SEQADV LINK REVDAT 2 22-APR-15 4QBM 1 JRNL REVDAT 1 21-MAY-14 4QBM 0 JRNL AUTH C.TALLANT,E.VALENTINI,O.FEDOROV,L.OVERVOORDE,F.M.FERGUSON, JRNL AUTH 2 P.FILIPPAKOPOULOS,D.I.SVERGUN,S.KNAPP,A.CIULLI JRNL TITL MOLECULAR BASIS OF HISTONE TAIL RECOGNITION BY HUMAN TIP5 JRNL TITL 2 PHD FINGER AND BROMODOMAIN OF THE CHROMATIN REMODELING JRNL TITL 3 COMPLEX NORC. JRNL REF STRUCTURE V. 23 80 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 25533489 JRNL DOI 10.1016/J.STR.2014.10.017 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 33458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1661 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2507 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.2110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1905 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 224 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.24000 REMARK 3 B22 (A**2) : 0.24000 REMARK 3 B33 (A**2) : -0.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.974 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1976 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1820 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2656 ; 1.386 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4182 ; 0.795 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 233 ; 5.136 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;29.843 ;22.477 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 333 ;11.079 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;17.702 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 267 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2238 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 509 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 920 ; 1.359 ; 1.803 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 919 ; 1.353 ; 1.801 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1145 ; 2.132 ; 2.684 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1146 ; 2.134 ; 2.686 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1056 ; 2.284 ; 2.194 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1056 ; 2.282 ; 2.194 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1508 ; 3.629 ; 3.168 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2539 ; 5.377 ;16.244 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2405 ; 5.248 ;15.605 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1794 A 1899 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7199 2.9499 -57.5868 REMARK 3 T TENSOR REMARK 3 T11: 0.0281 T22: 0.0219 REMARK 3 T33: 0.0125 T12: 0.0131 REMARK 3 T13: -0.0105 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.6309 L22: 0.3232 REMARK 3 L33: 0.3777 L12: -0.2571 REMARK 3 L13: -0.3098 L23: 0.1387 REMARK 3 S TENSOR REMARK 3 S11: -0.0427 S12: 0.0036 S13: 0.0340 REMARK 3 S21: 0.0549 S22: 0.0518 S23: -0.0610 REMARK 3 S31: 0.0325 S32: -0.0387 S33: -0.0091 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1794 B 1898 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7726 -20.1779 -74.5087 REMARK 3 T TENSOR REMARK 3 T11: 0.0202 T22: 0.0167 REMARK 3 T33: 0.0155 T12: -0.0080 REMARK 3 T13: 0.0052 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.4920 L22: 1.2737 REMARK 3 L33: 0.3995 L12: 0.3377 REMARK 3 L13: -0.2078 L23: 0.0332 REMARK 3 S TENSOR REMARK 3 S11: -0.0411 S12: 0.0110 S13: 0.0330 REMARK 3 S21: -0.0357 S22: 0.0541 S23: -0.0374 REMARK 3 S31: 0.0783 S32: -0.0414 S33: -0.0130 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4QBM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000085849. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35633 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 29.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.03600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4LZ2, BAZ2A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM PHOSPHATE MONOBASIC, 0.1M REMARK 280 POTASSIUM PHOSPHATE MONOBASIC, 2 M NACL, 0.1M MES, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.81850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.90925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.72775 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN B 1899 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 1893 OE2 GLU A 1896 1.97 REMARK 500 OE1 GLU B 1874 O HOH B 2270 2.03 REMARK 500 O ARG D 17 O HOH D 102 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A1886 CG - SD - CE ANGL. DEV. = -10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS D 18 158.84 -47.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN C OF GLY-ALA-LYS(AC)-AR REMARK 800 PEPTIDE WITH SEQUENCE GLY-ALA-LYS(AC)-ARG-HIS- WITH SEQUENCE GLY- REMARK 800 ALA-LYS(AC)-AR REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN D OF GLY-ALA-LYS(AC)-AR REMARK 800 PEPTIDE WITH SEQUENCE GLY-ALA-LYS(AC)-ARG-HIS- WITH SEQUENCE GLY- REMARK 800 ALA-LYS(AC)-AR REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QC1 RELATED DB: PDB REMARK 900 RELATED ID: 4QC3 RELATED DB: PDB DBREF 4QBM A 1796 1899 UNP Q9UIF9 BAZ2A_HUMAN 1796 1899 DBREF 4QBM B 1796 1899 UNP Q9UIF9 BAZ2A_HUMAN 1796 1899 DBREF 4QBM C 14 22 PDB 4QBM 4QBM 14 22 DBREF 4QBM D 14 22 PDB 4QBM 4QBM 14 22 SEQADV 4QBM SER A 1794 UNP Q9UIF9 EXPRESSION TAG SEQADV 4QBM MET A 1795 UNP Q9UIF9 EXPRESSION TAG SEQADV 4QBM SER B 1794 UNP Q9UIF9 EXPRESSION TAG SEQADV 4QBM MET B 1795 UNP Q9UIF9 EXPRESSION TAG SEQRES 1 A 106 SER MET HIS SER ASP LEU THR PHE CYS GLU ILE ILE LEU SEQRES 2 A 106 MET GLU MET GLU SER HIS ASP ALA ALA TRP PRO PHE LEU SEQRES 3 A 106 GLU PRO VAL ASN PRO ARG LEU VAL SER GLY TYR ARG ARG SEQRES 4 A 106 ILE ILE LYS ASN PRO MET ASP PHE SER THR MET ARG GLU SEQRES 5 A 106 ARG LEU LEU ARG GLY GLY TYR THR SER SER GLU GLU PHE SEQRES 6 A 106 ALA ALA ASP ALA LEU LEU VAL PHE ASP ASN CYS GLN THR SEQRES 7 A 106 PHE ASN GLU ASP ASP SER GLU VAL GLY LYS ALA GLY HIS SEQRES 8 A 106 ILE MET ARG ARG PHE PHE GLU SER ARG TRP GLU GLU PHE SEQRES 9 A 106 TYR GLN SEQRES 1 B 106 SER MET HIS SER ASP LEU THR PHE CYS GLU ILE ILE LEU SEQRES 2 B 106 MET GLU MET GLU SER HIS ASP ALA ALA TRP PRO PHE LEU SEQRES 3 B 106 GLU PRO VAL ASN PRO ARG LEU VAL SER GLY TYR ARG ARG SEQRES 4 B 106 ILE ILE LYS ASN PRO MET ASP PHE SER THR MET ARG GLU SEQRES 5 B 106 ARG LEU LEU ARG GLY GLY TYR THR SER SER GLU GLU PHE SEQRES 6 B 106 ALA ALA ASP ALA LEU LEU VAL PHE ASP ASN CYS GLN THR SEQRES 7 B 106 PHE ASN GLU ASP ASP SER GLU VAL GLY LYS ALA GLY HIS SEQRES 8 B 106 ILE MET ARG ARG PHE PHE GLU SER ARG TRP GLU GLU PHE SEQRES 9 B 106 TYR GLN SEQRES 1 C 9 GLY ALA ALY ARG HIS ARG ALY VAL LEU SEQRES 1 D 9 GLY ALA ALY ARG HIS ARG ALY VAL LEU MODRES 4QBM ALY C 16 LYS N(6)-ACETYLLYSINE MODRES 4QBM ALY C 20 LYS N(6)-ACETYLLYSINE MODRES 4QBM ALY D 16 LYS N(6)-ACETYLLYSINE MODRES 4QBM ALY D 20 LYS N(6)-ACETYLLYSINE HET ALY C 16 12 HET ALY C 20 12 HET ALY D 16 12 HET ALY D 20 12 HET EDO B2101 4 HETNAM ALY N(6)-ACETYLLYSINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ALY 4(C8 H16 N2 O3) FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *224(H2 O) HELIX 1 1 SER A 1794 HIS A 1812 1 19 HELIX 2 2 ASP A 1813 LEU A 1819 5 7 HELIX 3 3 GLY A 1829 ILE A 1834 1 6 HELIX 4 4 ASP A 1839 ARG A 1849 1 11 HELIX 5 5 SER A 1854 ASN A 1873 1 20 HELIX 6 6 SER A 1877 GLU A 1895 1 19 HELIX 7 7 GLU A 1896 GLN A 1899 5 4 HELIX 8 8 MET B 1795 SER B 1811 1 17 HELIX 9 9 HIS B 1812 LEU B 1819 5 8 HELIX 10 10 GLY B 1829 ILE B 1834 1 6 HELIX 11 11 ASP B 1839 ARG B 1849 1 11 HELIX 12 12 SER B 1854 ASN B 1873 1 20 HELIX 13 13 SER B 1877 GLU B 1895 1 19 HELIX 14 14 GLU B 1896 TYR B 1898 5 3 LINK C ALA C 15 N ALY C 16 1555 1555 1.32 LINK C ALY C 16 N ARG C 17 1555 1555 1.34 LINK C ARG C 19 N ALY C 20 1555 1555 1.34 LINK C ALY C 20 N VAL C 21 1555 1555 1.35 LINK C ALA D 15 N ALY D 16 1555 1555 1.31 LINK C ALY D 16 N ARG D 17 1555 1555 1.31 LINK C ARG D 19 N ALY D 20 1555 1555 1.34 LINK C ALY D 20 N VAL D 21 1555 1555 1.33 SITE 1 AC1 6 GLU B1803 GLU B1810 ARG B1844 ARG B1887 SITE 2 AC1 6 HOH B2244 HOH B2294 SITE 1 AC2 30 PRO A1817 VAL A1822 SER A1828 ARG A1832 SITE 2 AC2 30 GLN A1870 THR A1871 PHE A1872 ASN A1873 SITE 3 AC2 30 GLU A1874 ASP A1875 HOH A2101 HOH A2103 SITE 4 AC2 30 HOH A2122 HOH A2152 HOH A2162 HOH A2173 SITE 5 AC2 30 HOH A2209 TRP B1816 GLU B1820 LEU B1826 SITE 6 AC2 30 HOH B2301 HOH C 103 HOH C 105 HOH C 107 SITE 7 AC2 30 HOH C 108 HOH C 109 GLY D 14 ALA D 15 SITE 8 AC2 30 VAL D 21 LEU D 22 SITE 1 AC3 26 TRP A1816 LEU A1826 TRP B1816 PHE B1818 SITE 2 AC3 26 TYR B1830 ILE B1833 GLN B1870 THR B1871 SITE 3 AC3 26 PHE B1872 ASN B1873 GLU B1874 ASP B1875 SITE 4 AC3 26 GLU B1878 HOH B2210 HOH B2217 HOH B2237 SITE 5 AC3 26 HOH B2270 ALA C 15 ALY C 16 ALY C 20 SITE 6 AC3 26 VAL C 21 LEU C 22 HOH D 101 HOH D 102 SITE 7 AC3 26 HOH D 104 HOH D 105 CRYST1 64.869 64.869 71.637 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015416 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015416 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013959 0.00000