HEADER TRANSCRIPTION 09-MAY-14 4QC1 TITLE CRYSTAL STRUCTURE OF HUMAN BAZ2B BROMODOMAIN IN COMPLEX WITH AN TITLE 2 ACETYLATED HISTONE 3 PEPTIDE (H3K14AC) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 2B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2062-2166; COMPND 5 SYNONYM: HWALP4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ACETYLATED HISTONE 3 PEPTIDE (H3K14AC); COMPND 9 CHAIN: D, E; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BAZ2B, KIAA1476; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 2B, HWALP4, KEYWDS 2 KIAA1476, TRANSCRIPTIONAL REGULATION, STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, SGC, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR C.TALLANT,B.JOSE,S.PICAUD,A.CHAIKUAD,P.FILIPPAKOPOULOS,N.BURGESS- AUTHOR 2 BROWN,F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,S.KNAPP, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 30-OCT-24 4QC1 1 REMARK REVDAT 4 06-DEC-23 4QC1 1 REMARK REVDAT 3 20-SEP-23 4QC1 1 REMARK SEQADV LINK REVDAT 2 22-APR-15 4QC1 1 JRNL REVDAT 1 21-MAY-14 4QC1 0 JRNL AUTH C.TALLANT,E.VALENTINI,O.FEDOROV,L.OVERVOORDE,F.M.FERGUSON, JRNL AUTH 2 P.FILIPPAKOPOULOS,D.I.SVERGUN,S.KNAPP,A.CIULLI JRNL TITL MOLECULAR BASIS OF HISTONE TAIL RECOGNITION BY HUMAN TIP5 JRNL TITL 2 PHD FINGER AND BROMODOMAIN OF THE CHROMATIN REMODELING JRNL TITL 3 COMPLEX NORC. JRNL REF STRUCTURE V. 23 80 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 25533489 JRNL DOI 10.1016/J.STR.2014.10.017 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 18364 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 987 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1253 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1860 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.47000 REMARK 3 B22 (A**2) : 3.42000 REMARK 3 B33 (A**2) : -2.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.186 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.903 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1904 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1809 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2560 ; 1.658 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4195 ; 0.861 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 225 ; 6.348 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;32.017 ;24.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 349 ;15.572 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;18.014 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 273 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2089 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 417 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 912 ; 2.577 ; 2.792 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 911 ; 2.575 ; 2.787 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1133 ; 3.865 ; 4.147 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1134 ; 3.863 ; 4.153 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 992 ; 3.103 ; 3.075 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 989 ; 3.023 ; 3.062 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1422 ; 4.511 ; 4.455 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2320 ; 6.563 ;22.562 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2279 ; 6.524 ;22.394 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2060 A 2165 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9162 4.1567 1.0697 REMARK 3 T TENSOR REMARK 3 T11: 0.0214 T22: 0.0867 REMARK 3 T33: 0.0734 T12: 0.0179 REMARK 3 T13: 0.0029 T23: -0.0515 REMARK 3 L TENSOR REMARK 3 L11: 0.1187 L22: 0.1012 REMARK 3 L33: 3.0412 L12: -0.0417 REMARK 3 L13: 0.0679 L23: 0.3545 REMARK 3 S TENSOR REMARK 3 S11: -0.0303 S12: -0.0418 S13: -0.0229 REMARK 3 S21: -0.0202 S22: -0.0241 S23: 0.0284 REMARK 3 S31: -0.1339 S32: -0.0491 S33: 0.0544 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2061 B 2166 REMARK 3 ORIGIN FOR THE GROUP (A): 8.6908 4.5936 36.5087 REMARK 3 T TENSOR REMARK 3 T11: 0.0249 T22: 0.0537 REMARK 3 T33: 0.0771 T12: -0.0269 REMARK 3 T13: -0.0097 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 0.4180 L22: 0.0093 REMARK 3 L33: 4.0209 L12: -0.0370 REMARK 3 L13: 0.0994 L23: -0.0319 REMARK 3 S TENSOR REMARK 3 S11: -0.0780 S12: 0.0590 S13: -0.0243 REMARK 3 S21: 0.0111 S22: -0.0202 S23: 0.0029 REMARK 3 S31: -0.1411 S32: 0.1872 S33: 0.0982 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4QC1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000085864. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19403 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 29.039 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.03500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : 0.57800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ENSAMBLE OF PDB ID G0L, 1DVV, 1X0J, 3DAI, 3HMH, REMARK 200 2GRC, 2OO1, 2OSS, 2UOU, 3D7C, 3DWY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 0.01M ZINC SULFATE, 25% PEG REMARK 280 METHYL ETHER 550, PH 5.9, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.86200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.02750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.50600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.02750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.86200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.50600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 2166 REMARK 465 SER B 2060 REMARK 465 LYS D 9 REMARK 465 SER D 10 REMARK 465 THR D 11 REMARK 465 LYS E 9 REMARK 465 SER E 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B2099 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 2065 O HOH B 2337 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A2094 68.72 -119.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR E 11 GLY E 12 -140.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A2137 OE2 REMARK 620 2 HIS A2151 NE2 110.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A2141 OE2 REMARK 620 2 GLU A2141 OE1 57.1 REMARK 620 3 HOH A2313 O 86.6 139.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2313 O REMARK 620 2 GLU B2137 OE2 125.5 REMARK 620 3 HIS B2151 NE2 115.3 92.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QC3 RELATED DB: PDB REMARK 900 RELATED ID: 4QBM RELATED DB: PDB DBREF 4QC1 A 2062 2166 UNP Q9UIF8 BAZ2B_HUMAN 2062 2166 DBREF 4QC1 B 2062 2166 UNP Q9UIF8 BAZ2B_HUMAN 2062 2166 DBREF 4QC1 D 9 19 PDB 4QC1 4QC1 9 19 DBREF 4QC1 E 9 19 PDB 4QC1 4QC1 9 19 SEQADV 4QC1 SER A 2060 UNP Q9UIF8 EXPRESSION TAG SEQADV 4QC1 MET A 2061 UNP Q9UIF8 EXPRESSION TAG SEQADV 4QC1 SER B 2060 UNP Q9UIF8 EXPRESSION TAG SEQADV 4QC1 MET B 2061 UNP Q9UIF8 EXPRESSION TAG SEQRES 1 A 107 SER MET ASP SER LYS ASP LEU ALA LEU CYS SER MET ILE SEQRES 2 A 107 LEU THR GLU MET GLU THR HIS GLU ASP ALA TRP PRO PHE SEQRES 3 A 107 LEU LEU PRO VAL ASN LEU LYS LEU VAL PRO GLY TYR LYS SEQRES 4 A 107 LYS VAL ILE LYS LYS PRO MET ASP PHE SER THR ILE ARG SEQRES 5 A 107 GLU LYS LEU SER SER GLY GLN TYR PRO ASN LEU GLU THR SEQRES 6 A 107 PHE ALA LEU ASP VAL ARG LEU VAL PHE ASP ASN CYS GLU SEQRES 7 A 107 THR PHE ASN GLU ASP ASP SER ASP ILE GLY ARG ALA GLY SEQRES 8 A 107 HIS ASN MET ARG LYS TYR PHE GLU LYS LYS TRP THR ASP SEQRES 9 A 107 THR PHE LYS SEQRES 1 B 107 SER MET ASP SER LYS ASP LEU ALA LEU CYS SER MET ILE SEQRES 2 B 107 LEU THR GLU MET GLU THR HIS GLU ASP ALA TRP PRO PHE SEQRES 3 B 107 LEU LEU PRO VAL ASN LEU LYS LEU VAL PRO GLY TYR LYS SEQRES 4 B 107 LYS VAL ILE LYS LYS PRO MET ASP PHE SER THR ILE ARG SEQRES 5 B 107 GLU LYS LEU SER SER GLY GLN TYR PRO ASN LEU GLU THR SEQRES 6 B 107 PHE ALA LEU ASP VAL ARG LEU VAL PHE ASP ASN CYS GLU SEQRES 7 B 107 THR PHE ASN GLU ASP ASP SER ASP ILE GLY ARG ALA GLY SEQRES 8 B 107 HIS ASN MET ARG LYS TYR PHE GLU LYS LYS TRP THR ASP SEQRES 9 B 107 THR PHE LYS SEQRES 1 D 11 LYS SER THR GLY GLY ALY ALA PRO ARG LYS GLN SEQRES 1 E 11 LYS SER THR GLY GLY ALY ALA PRO ARG LYS GLN MODRES 4QC1 ALY D 14 LYS N(6)-ACETYLLYSINE MODRES 4QC1 ALY E 14 LYS N(6)-ACETYLLYSINE HET ALY D 14 12 HET ALY E 14 12 HET ZN A2201 1 HET ZN A2202 1 HET ZN B2201 1 HET ZN B2202 1 HET SO4 B2203 5 HETNAM ALY N(6)-ACETYLLYSINE HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 3 ALY 2(C8 H16 N2 O3) FORMUL 5 ZN 4(ZN 2+) FORMUL 9 SO4 O4 S 2- FORMUL 10 HOH *94(H2 O) HELIX 1 1 ASP A 2062 HIS A 2079 1 18 HELIX 2 2 GLU A 2080 LEU A 2086 5 7 HELIX 3 3 GLY A 2096 ILE A 2101 1 6 HELIX 4 4 ASP A 2106 SER A 2116 1 11 HELIX 5 5 ASN A 2121 ASN A 2140 1 20 HELIX 6 6 SER A 2144 PHE A 2165 1 22 HELIX 7 7 ASP B 2062 THR B 2078 1 17 HELIX 8 8 HIS B 2079 LEU B 2086 5 8 HELIX 9 9 GLY B 2096 ILE B 2101 1 6 HELIX 10 10 ASP B 2106 SER B 2116 1 11 HELIX 11 11 ASN B 2121 ASN B 2140 1 20 HELIX 12 12 SER B 2144 PHE B 2165 1 22 LINK C GLY D 13 N ALY D 14 1555 1555 1.34 LINK C ALY D 14 N ALA D 15 1555 1555 1.33 LINK C GLY E 13 N ALY E 14 1555 1555 1.34 LINK C ALY E 14 N ALA E 15 1555 1555 1.31 LINK OE2 GLU A2137 ZN ZN A2202 1555 1555 1.87 LINK OE2 GLU A2141 ZN ZN A2201 1555 1555 2.07 LINK OE1 GLU A2141 ZN ZN A2201 1555 1555 2.41 LINK NE2 HIS A2151 ZN ZN A2202 1555 1555 1.91 LINK ZN ZN A2201 O HOH A2313 1555 1555 2.57 LINK O HOH A2313 ZN ZN B2201 2555 1555 1.69 LINK OE2 GLU B2137 ZN ZN B2201 1555 1555 2.38 LINK OE2 GLU B2141 ZN ZN B2202 1555 1555 2.08 LINK NE2 HIS B2151 ZN ZN B2201 1555 1555 2.35 SITE 1 AC1 5 GLU A2141 HOH A2313 GLU B2137 HIS B2151 SITE 2 AC1 5 ZN B2201 SITE 1 AC2 5 GLU A2137 HIS A2151 HOH A2315 GLU B2141 SITE 2 AC2 5 ZN B2202 SITE 1 AC3 5 GLU A2141 ZN A2201 HOH A2313 GLU B2137 SITE 2 AC3 5 HIS B2151 SITE 1 AC4 5 GLU A2137 HIS A2151 ZN A2202 HOH A2315 SITE 2 AC4 5 GLU B2141 SITE 1 AC5 3 ASP A2062 SER A2063 HOH B2331 CRYST1 29.724 67.012 136.055 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033643 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007350 0.00000