HEADER TRANSPORT PROTEIN 09-MAY-14 4QC2 TITLE CRYSTAL STRUCTURE OF LIPOPOLYSACCHARIDE TRANSPORT PROTEIN LPTB IN TITLE 2 COMPLEX WITH ATP AND MAGNESIUM IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER RELATED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NUCLEOTIDE-BINDING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 536056; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: LPTB, ECDH1_0506, ECDH1ME8569_3090; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PACYCDUE KEYWDS NUCLEOTIDE-BINDING DOMAIN, LIPOPOLYSACCHARIDE TRANSPORT, LPTFGC, KEYWDS 2 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.WANG,Q.XIANG,X.ZHU,H.DONG,C.HE,H.WANG,Y.ZHANG,W.WANG,C.DONG REVDAT 3 08-NOV-23 4QC2 1 REMARK SEQADV LINK REVDAT 2 24-JAN-18 4QC2 1 REMARK REVDAT 1 22-OCT-14 4QC2 0 JRNL AUTH Z.WANG,Q.XIANG,X.ZHU,H.DONG,C.HE,H.WANG,Y.ZHANG,W.WANG, JRNL AUTH 2 C.DONG JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF CONSERVED JRNL TITL 2 NUCLEOTIDE-BINDING PROTEIN LPTB IN LIPOPOLYSACCHARIDE JRNL TITL 3 TRANSPORT. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 452 443 2014 JRNL REFN ISSN 0006-291X JRNL PMID 25172661 JRNL DOI 10.1016/J.BBRC.2014.08.094 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 22804 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1230 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1598 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3658 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.13000 REMARK 3 B22 (A**2) : 3.49000 REMARK 3 B33 (A**2) : -12.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.152 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.447 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3776 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5122 ; 1.860 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 468 ; 6.343 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;37.327 ;23.068 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 658 ;16.624 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;20.728 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 592 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2814 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 236 B 2 236 3391 0.12 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 236 REMARK 3 ORIGIN FOR THE GROUP (A): 47.5089 45.8816 53.9219 REMARK 3 T TENSOR REMARK 3 T11: 0.0751 T22: 0.0438 REMARK 3 T33: 0.0127 T12: 0.0249 REMARK 3 T13: -0.0100 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.1535 L22: 0.3171 REMARK 3 L33: 0.5888 L12: -0.0893 REMARK 3 L13: 0.0149 L23: -0.3401 REMARK 3 S TENSOR REMARK 3 S11: 0.0500 S12: 0.0518 S13: 0.0275 REMARK 3 S21: -0.0620 S22: -0.0560 S23: -0.0199 REMARK 3 S31: 0.0443 S32: 0.0834 S33: 0.0060 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 236 REMARK 3 ORIGIN FOR THE GROUP (A): 55.6276 13.4512 61.5712 REMARK 3 T TENSOR REMARK 3 T11: 0.1733 T22: 0.0463 REMARK 3 T33: 0.0601 T12: 0.0550 REMARK 3 T13: 0.0875 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 1.0631 L22: 0.0704 REMARK 3 L33: 0.8241 L12: -0.1294 REMARK 3 L13: -0.5881 L23: 0.0401 REMARK 3 S TENSOR REMARK 3 S11: -0.2204 S12: -0.0286 S13: -0.0826 REMARK 3 S21: -0.0089 S22: 0.0250 S23: -0.0222 REMARK 3 S31: 0.3217 S32: 0.0940 S33: 0.1955 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4QC2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000085865. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 293.25 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24010 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 44.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 1.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : 0.60000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: 1JI0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM FLUORIDE, 20% PEG 3350, REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.25K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.80500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.80500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.58000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.88000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.58000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.88000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.80500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.58000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.88000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.80500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.58000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.88000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 481 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 237 REMARK 465 ASP A 238 REMARK 465 PHE A 239 REMARK 465 ARG A 240 REMARK 465 LEU A 241 REMARK 465 HIS A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 MET B 1 REMARK 465 GLU B 237 REMARK 465 ASP B 238 REMARK 465 PHE B 239 REMARK 465 ARG B 240 REMARK 465 LEU B 241 REMARK 465 HIS B 242 REMARK 465 HIS B 243 REMARK 465 HIS B 244 REMARK 465 HIS B 245 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 449 O HOH B 450 3656 2.12 REMARK 500 O HOH B 414 O HOH B 439 3656 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 129 CG HIS A 129 CD2 0.058 REMARK 500 HIS A 182 CG HIS A 182 CD2 0.054 REMARK 500 HIS B 73 CG HIS B 73 CD2 0.067 REMARK 500 HIS B 129 CG HIS B 129 CD2 0.057 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 143 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 143 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 145 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 145 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 143 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 143 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 14 -134.47 56.01 REMARK 500 ASP A 63 -109.63 50.47 REMARK 500 TYR A 234 -53.38 -121.73 REMARK 500 LYS B 14 -83.44 61.19 REMARK 500 ARG B 16 109.50 -59.91 REMARK 500 LEU B 225 1.50 -61.18 REMARK 500 GLN B 226 16.44 -149.79 REMARK 500 TYR B 234 -51.69 -126.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 43 OG1 REMARK 620 2 GLN A 85 OE1 84.0 REMARK 620 3 ATP A 301 O2G 171.0 105.0 REMARK 620 4 ATP A 301 O1B 85.8 168.8 85.4 REMARK 620 5 HOH A 490 O 89.6 89.8 91.8 85.6 REMARK 620 6 HOH A 491 O 85.8 93.5 92.1 90.3 174.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 43 OG1 REMARK 620 2 GLN B 85 OE1 77.5 REMARK 620 3 ATP B 301 O1B 89.3 165.6 REMARK 620 4 ATP B 301 O2G 175.4 102.1 91.5 REMARK 620 5 HOH B 452 O 87.8 88.6 96.6 87.7 REMARK 620 6 HOH B 453 O 90.2 79.6 94.9 94.2 168.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 302 DBREF 4QC2 A 1 241 UNP C9QY46 C9QY46_ECOD1 1 241 DBREF 4QC2 B 1 241 UNP C9QY46 C9QY46_ECOD1 1 241 SEQADV 4QC2 HIS A 242 UNP C9QY46 EXPRESSION TAG SEQADV 4QC2 HIS A 243 UNP C9QY46 EXPRESSION TAG SEQADV 4QC2 HIS A 244 UNP C9QY46 EXPRESSION TAG SEQADV 4QC2 HIS A 245 UNP C9QY46 EXPRESSION TAG SEQADV 4QC2 HIS A 246 UNP C9QY46 EXPRESSION TAG SEQADV 4QC2 HIS A 247 UNP C9QY46 EXPRESSION TAG SEQADV 4QC2 HIS B 242 UNP C9QY46 EXPRESSION TAG SEQADV 4QC2 HIS B 243 UNP C9QY46 EXPRESSION TAG SEQADV 4QC2 HIS B 244 UNP C9QY46 EXPRESSION TAG SEQADV 4QC2 HIS B 245 UNP C9QY46 EXPRESSION TAG SEQADV 4QC2 HIS B 246 UNP C9QY46 EXPRESSION TAG SEQADV 4QC2 HIS B 247 UNP C9QY46 EXPRESSION TAG SEQRES 1 A 247 MET ALA THR LEU THR ALA LYS ASN LEU ALA LYS ALA TYR SEQRES 2 A 247 LYS GLY ARG ARG VAL VAL GLU ASP VAL SER LEU THR VAL SEQRES 3 A 247 ASN SER GLY GLU ILE VAL GLY LEU LEU GLY PRO ASN GLY SEQRES 4 A 247 ALA GLY LYS THR THR THR PHE TYR MET VAL VAL GLY ILE SEQRES 5 A 247 VAL PRO ARG ASP ALA GLY ASN ILE ILE ILE ASP ASP ASP SEQRES 6 A 247 ASP ILE SER LEU LEU PRO LEU HIS ALA ARG ALA ARG ARG SEQRES 7 A 247 GLY ILE GLY TYR LEU PRO GLN GLU ALA SER ILE PHE ARG SEQRES 8 A 247 ARG LEU SER VAL TYR ASP ASN LEU MET ALA VAL LEU GLN SEQRES 9 A 247 ILE ARG ASP ASP LEU SER ALA GLU GLN ARG GLU ASP ARG SEQRES 10 A 247 ALA ASN GLU LEU MET GLU GLU PHE HIS ILE GLU HIS LEU SEQRES 11 A 247 ARG ASP SER MET GLY GLN SER LEU SER GLY GLY GLU ARG SEQRES 12 A 247 ARG ARG VAL GLU ILE ALA ARG ALA LEU ALA ALA ASN PRO SEQRES 13 A 247 LYS PHE ILE LEU LEU ASP GLU PRO PHE ALA GLY VAL ASP SEQRES 14 A 247 PRO ILE SER VAL ILE ASP ILE LYS ARG ILE ILE GLU HIS SEQRES 15 A 247 LEU ARG ASP SER GLY LEU GLY VAL LEU ILE THR ASP HIS SEQRES 16 A 247 ASN VAL ARG GLU THR LEU ALA VAL CYS GLU ARG ALA TYR SEQRES 17 A 247 ILE VAL SER GLN GLY HIS LEU ILE ALA HIS GLY THR PRO SEQRES 18 A 247 THR GLU ILE LEU GLN ASP GLU HIS VAL LYS ARG VAL TYR SEQRES 19 A 247 LEU GLY GLU ASP PHE ARG LEU HIS HIS HIS HIS HIS HIS SEQRES 1 B 247 MET ALA THR LEU THR ALA LYS ASN LEU ALA LYS ALA TYR SEQRES 2 B 247 LYS GLY ARG ARG VAL VAL GLU ASP VAL SER LEU THR VAL SEQRES 3 B 247 ASN SER GLY GLU ILE VAL GLY LEU LEU GLY PRO ASN GLY SEQRES 4 B 247 ALA GLY LYS THR THR THR PHE TYR MET VAL VAL GLY ILE SEQRES 5 B 247 VAL PRO ARG ASP ALA GLY ASN ILE ILE ILE ASP ASP ASP SEQRES 6 B 247 ASP ILE SER LEU LEU PRO LEU HIS ALA ARG ALA ARG ARG SEQRES 7 B 247 GLY ILE GLY TYR LEU PRO GLN GLU ALA SER ILE PHE ARG SEQRES 8 B 247 ARG LEU SER VAL TYR ASP ASN LEU MET ALA VAL LEU GLN SEQRES 9 B 247 ILE ARG ASP ASP LEU SER ALA GLU GLN ARG GLU ASP ARG SEQRES 10 B 247 ALA ASN GLU LEU MET GLU GLU PHE HIS ILE GLU HIS LEU SEQRES 11 B 247 ARG ASP SER MET GLY GLN SER LEU SER GLY GLY GLU ARG SEQRES 12 B 247 ARG ARG VAL GLU ILE ALA ARG ALA LEU ALA ALA ASN PRO SEQRES 13 B 247 LYS PHE ILE LEU LEU ASP GLU PRO PHE ALA GLY VAL ASP SEQRES 14 B 247 PRO ILE SER VAL ILE ASP ILE LYS ARG ILE ILE GLU HIS SEQRES 15 B 247 LEU ARG ASP SER GLY LEU GLY VAL LEU ILE THR ASP HIS SEQRES 16 B 247 ASN VAL ARG GLU THR LEU ALA VAL CYS GLU ARG ALA TYR SEQRES 17 B 247 ILE VAL SER GLN GLY HIS LEU ILE ALA HIS GLY THR PRO SEQRES 18 B 247 THR GLU ILE LEU GLN ASP GLU HIS VAL LYS ARG VAL TYR SEQRES 19 B 247 LEU GLY GLU ASP PHE ARG LEU HIS HIS HIS HIS HIS HIS HET ATP A 301 31 HET MG A 302 1 HET ATP B 301 31 HET MG B 302 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *144(H2 O) HELIX 1 1 GLY A 41 GLY A 51 1 11 HELIX 2 2 PRO A 71 ARG A 78 1 8 HELIX 3 3 SER A 94 GLN A 104 1 11 HELIX 4 4 SER A 110 PHE A 125 1 16 HELIX 5 5 ILE A 127 ARG A 131 5 5 HELIX 6 6 MET A 134 LEU A 138 5 5 HELIX 7 7 SER A 139 ALA A 154 1 16 HELIX 8 8 ASP A 169 SER A 186 1 18 HELIX 9 9 ASN A 196 CYS A 204 1 9 HELIX 10 10 THR A 220 ASP A 227 1 8 HELIX 11 11 ASP A 227 TYR A 234 1 8 HELIX 12 12 GLY B 41 GLY B 51 1 11 HELIX 13 13 PRO B 71 ARG B 78 1 8 HELIX 14 14 SER B 94 GLN B 104 1 11 HELIX 15 15 SER B 110 PHE B 125 1 16 HELIX 16 16 ILE B 127 ARG B 131 5 5 HELIX 17 17 MET B 134 LEU B 138 5 5 HELIX 18 18 SER B 139 ALA B 154 1 16 HELIX 19 19 ASP B 169 SER B 186 1 18 HELIX 20 20 ASN B 196 CYS B 204 1 9 HELIX 21 21 THR B 220 LEU B 225 1 6 HELIX 22 22 ASP B 227 TYR B 234 1 8 SHEET 1 A 4 ARG A 16 ASN A 27 0 SHEET 2 A 4 THR A 3 TYR A 13 -1 N ALA A 6 O LEU A 24 SHEET 3 A 4 ALA A 57 ILE A 62 -1 O ILE A 61 N THR A 5 SHEET 4 A 4 ASP A 65 ASP A 66 -1 O ASP A 65 N ILE A 62 SHEET 1 B 6 ILE A 80 LEU A 83 0 SHEET 2 B 6 PHE A 158 ASP A 162 1 O PHE A 158 N GLY A 81 SHEET 3 B 6 GLY A 189 THR A 193 1 O LEU A 191 N LEU A 161 SHEET 4 B 6 ILE A 31 LEU A 35 1 N VAL A 32 O VAL A 190 SHEET 5 B 6 ARG A 206 SER A 211 1 O TYR A 208 N LEU A 35 SHEET 6 B 6 HIS A 214 GLY A 219 -1 O ILE A 216 N ILE A 209 SHEET 1 C 3 ARG B 16 ASN B 27 0 SHEET 2 C 3 THR B 3 TYR B 13 -1 N LEU B 4 O VAL B 26 SHEET 3 C 3 ALA B 57 ILE B 62 -1 O ILE B 61 N THR B 5 SHEET 1 D 6 ILE B 80 LEU B 83 0 SHEET 2 D 6 PHE B 158 ASP B 162 1 O PHE B 158 N GLY B 81 SHEET 3 D 6 GLY B 189 THR B 193 1 O GLY B 189 N ILE B 159 SHEET 4 D 6 ILE B 31 LEU B 35 1 N VAL B 32 O VAL B 190 SHEET 5 D 6 ARG B 206 SER B 211 1 O TYR B 208 N LEU B 35 SHEET 6 D 6 HIS B 214 GLY B 219 -1 O ILE B 216 N ILE B 209 LINK OG1 THR A 43 MG MG A 302 1555 1555 2.05 LINK OE1 GLN A 85 MG MG A 302 1555 1555 2.04 LINK O2G ATP A 301 MG MG A 302 1555 1555 2.15 LINK O1B ATP A 301 MG MG A 302 1555 1555 2.20 LINK MG MG A 302 O HOH A 490 1555 1555 2.27 LINK MG MG A 302 O HOH A 491 1555 1555 1.89 LINK OG1 THR B 43 MG MG B 302 1555 1555 2.11 LINK OE1 GLN B 85 MG MG B 302 1555 1555 2.18 LINK O1B ATP B 301 MG MG B 302 1555 1555 2.03 LINK O2G ATP B 301 MG MG B 302 1555 1555 2.21 LINK MG MG B 302 O HOH B 452 1555 1555 2.03 LINK MG MG B 302 O HOH B 453 1555 1555 2.07 SITE 1 AC1 24 TYR A 13 ARG A 16 VAL A 18 ASN A 38 SITE 2 AC1 24 GLY A 39 ALA A 40 GLY A 41 LYS A 42 SITE 3 AC1 24 THR A 43 THR A 44 GLN A 85 SER A 137 SITE 4 AC1 24 SER A 139 GLY A 140 GLY A 141 GLU A 142 SITE 5 AC1 24 GLU A 163 HIS A 195 MG A 302 HOH A 442 SITE 6 AC1 24 HOH A 457 HOH A 461 HOH A 490 HOH A 491 SITE 1 AC2 5 THR A 43 GLN A 85 ATP A 301 HOH A 490 SITE 2 AC2 5 HOH A 491 SITE 1 AC3 22 TYR B 13 ARG B 16 VAL B 18 ASN B 38 SITE 2 AC3 22 GLY B 39 ALA B 40 GLY B 41 LYS B 42 SITE 3 AC3 22 THR B 43 THR B 44 GLN B 85 SER B 137 SITE 4 AC3 22 SER B 139 GLY B 140 GLY B 141 GLU B 142 SITE 5 AC3 22 GLU B 163 HIS B 195 MG B 302 HOH B 421 SITE 6 AC3 22 HOH B 452 HOH B 453 SITE 1 AC4 5 THR B 43 GLN B 85 ATP B 301 HOH B 452 SITE 2 AC4 5 HOH B 453 CRYST1 85.160 125.760 89.610 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011743 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011159 0.00000