HEADER TRANSCRIPTION 09-MAY-14 4QC3 TITLE CRYSTAL STRUCTURE OF HUMAN BAZ2B BROMODOMAIN IN COMPLEX WITH A TITLE 2 DIACETYLATED HISTONE 4 PEPTIDE (H4K8ACK12AC) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 2B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2062-2166; COMPND 5 SYNONYM: HWALP4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DIACETYLATED HISTONE 4 PEPTIDE (H4K8ACK12AC); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BAZ2B, KIAA1476; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 2B, HWALP4, KEYWDS 2 KIAA1476, TRANSCRIPTIONAL REGULATION, STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, SGC, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR C.TALLANT,B.JOSE,S.PICAUD,A.CHAIKUAD,P.FILIPPAKOPOULOS,N.BURGESS- AUTHOR 2 BROWN,F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,S.KNAPP, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 20-NOV-24 4QC3 1 REMARK REVDAT 4 06-DEC-23 4QC3 1 REMARK REVDAT 3 20-SEP-23 4QC3 1 REMARK SEQADV LINK REVDAT 2 22-APR-15 4QC3 1 JRNL REVDAT 1 21-MAY-14 4QC3 0 JRNL AUTH C.TALLANT,E.VALENTINI,O.FEDOROV,L.OVERVOORDE,F.M.FERGUSON, JRNL AUTH 2 P.FILIPPAKOPOULOS,D.I.SVERGUN,S.KNAPP,A.CIULLI JRNL TITL MOLECULAR BASIS OF HISTONE TAIL RECOGNITION BY HUMAN TIP5 JRNL TITL 2 PHD FINGER AND BROMODOMAIN OF THE CHROMATIN REMODELING JRNL TITL 3 COMPLEX NORC. JRNL REF STRUCTURE V. 23 80 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 25533489 JRNL DOI 10.1016/J.STR.2014.10.017 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 29184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1550 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2101 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.1470 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.1900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1787 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 283 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.32000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.298 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1853 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1753 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2489 ; 1.307 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4066 ; 0.758 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 222 ; 4.537 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;32.725 ;24.762 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 337 ;10.852 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;20.022 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 265 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2044 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 404 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 891 ; 0.707 ; 0.982 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 890 ; 0.705 ; 0.982 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1112 ; 1.160 ; 1.462 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1113 ; 1.160 ; 1.462 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 962 ; 1.213 ; 1.129 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 962 ; 1.212 ; 1.129 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1378 ; 1.875 ; 1.626 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2496 ; 4.482 ; 9.417 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2325 ; 4.312 ; 8.627 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2060 A 2166 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1319 8.6385 4.0516 REMARK 3 T TENSOR REMARK 3 T11: 0.0212 T22: 0.0362 REMARK 3 T33: 0.0165 T12: -0.0069 REMARK 3 T13: -0.0099 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.0934 L22: 0.3252 REMARK 3 L33: 1.6054 L12: -0.0520 REMARK 3 L13: 0.0199 L23: -0.2445 REMARK 3 S TENSOR REMARK 3 S11: 0.0432 S12: 0.0001 S13: -0.0109 REMARK 3 S21: -0.0439 S22: 0.0938 S23: 0.0473 REMARK 3 S31: 0.0479 S32: -0.0604 S33: -0.1370 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2060 B 2166 REMARK 3 ORIGIN FOR THE GROUP (A): 41.6168 6.1918 34.7572 REMARK 3 T TENSOR REMARK 3 T11: 0.0198 T22: 0.0225 REMARK 3 T33: 0.0157 T12: -0.0100 REMARK 3 T13: -0.0120 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.0020 L22: 0.4333 REMARK 3 L33: 0.3229 L12: -0.2119 REMARK 3 L13: 0.3512 L23: -0.1761 REMARK 3 S TENSOR REMARK 3 S11: 0.0530 S12: 0.0266 S13: -0.0054 REMARK 3 S21: 0.0638 S22: -0.0635 S23: -0.0493 REMARK 3 S31: 0.0036 S32: -0.0226 S33: 0.0105 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4QC3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000085866. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30743 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 29.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.01900 REMARK 200 R SYM (I) : 0.01500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 45.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.33 REMARK 200 R MERGE FOR SHELL (I) : 0.04000 REMARK 200 R SYM FOR SHELL (I) : 0.05200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 18.09 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ENSEMBLE OF PDB ENTRY 3G0L, 1DVV, 1X0J, 3DAI, REMARK 200 3HMH, 2GRC, 2OO1, 2OSS, 2UOU, 3D7C, 3DWY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 8000, 0.2M CALCIUM ACETATE, REMARK 280 0.1 M CACODYLATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 16.20100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A2166 CB CG CD CE NZ REMARK 470 LYS B2103 CE NZ REMARK 470 LYS B2166 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2371 O HOH C 113 2646 1.66 REMARK 500 O HOH B 2362 O HOH B 2431 2756 1.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A2076 CG - SD - CE ANGL. DEV. = -11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN C OF DIACETYLATED HISTONE REMARK 800 4 PEPTIDE (H4K8ACK12AC) REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QBM RELATED DB: PDB REMARK 900 RELATED ID: 4QC1 RELATED DB: PDB DBREF 4QC3 A 2062 2166 UNP Q9UIF8 BAZ2B_HUMAN 2062 2166 DBREF 4QC3 B 2062 2166 UNP Q9UIF8 BAZ2B_HUMAN 2062 2166 DBREF 4QC3 C 7 13 PDB 4QC3 4QC3 7 13 SEQADV 4QC3 SER A 2060 UNP Q9UIF8 EXPRESSION TAG SEQADV 4QC3 MET A 2061 UNP Q9UIF8 EXPRESSION TAG SEQADV 4QC3 SER B 2060 UNP Q9UIF8 EXPRESSION TAG SEQADV 4QC3 MET B 2061 UNP Q9UIF8 EXPRESSION TAG SEQRES 1 A 107 SER MET ASP SER LYS ASP LEU ALA LEU CYS SER MET ILE SEQRES 2 A 107 LEU THR GLU MET GLU THR HIS GLU ASP ALA TRP PRO PHE SEQRES 3 A 107 LEU LEU PRO VAL ASN LEU LYS LEU VAL PRO GLY TYR LYS SEQRES 4 A 107 LYS VAL ILE LYS LYS PRO MET ASP PHE SER THR ILE ARG SEQRES 5 A 107 GLU LYS LEU SER SER GLY GLN TYR PRO ASN LEU GLU THR SEQRES 6 A 107 PHE ALA LEU ASP VAL ARG LEU VAL PHE ASP ASN CYS GLU SEQRES 7 A 107 THR PHE ASN GLU ASP ASP SER ASP ILE GLY ARG ALA GLY SEQRES 8 A 107 HIS ASN MET ARG LYS TYR PHE GLU LYS LYS TRP THR ASP SEQRES 9 A 107 THR PHE LYS SEQRES 1 B 107 SER MET ASP SER LYS ASP LEU ALA LEU CYS SER MET ILE SEQRES 2 B 107 LEU THR GLU MET GLU THR HIS GLU ASP ALA TRP PRO PHE SEQRES 3 B 107 LEU LEU PRO VAL ASN LEU LYS LEU VAL PRO GLY TYR LYS SEQRES 4 B 107 LYS VAL ILE LYS LYS PRO MET ASP PHE SER THR ILE ARG SEQRES 5 B 107 GLU LYS LEU SER SER GLY GLN TYR PRO ASN LEU GLU THR SEQRES 6 B 107 PHE ALA LEU ASP VAL ARG LEU VAL PHE ASP ASN CYS GLU SEQRES 7 B 107 THR PHE ASN GLU ASP ASP SER ASP ILE GLY ARG ALA GLY SEQRES 8 B 107 HIS ASN MET ARG LYS TYR PHE GLU LYS LYS TRP THR ASP SEQRES 9 B 107 THR PHE LYS SEQRES 1 C 7 GLY ALY GLY LEU GLY ALY GLY MODRES 4QC3 ALY C 8 LYS N(6)-ACETYLLYSINE MODRES 4QC3 ALY C 12 LYS N(6)-ACETYLLYSINE HET ALY C 8 12 HET ALY C 12 12 HET EDO A2201 4 HET EDO A2202 4 HET EDO B2201 4 HETNAM ALY N(6)-ACETYLLYSINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ALY 2(C8 H16 N2 O3) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 7 HOH *283(H2 O) HELIX 1 1 ASP A 2062 THR A 2078 1 17 HELIX 2 2 ALA A 2082 LEU A 2086 5 5 HELIX 3 3 GLY A 2096 ILE A 2101 1 6 HELIX 4 4 ASP A 2106 SER A 2116 1 11 HELIX 5 5 ASN A 2121 ASN A 2140 1 20 HELIX 6 6 SER A 2144 LYS A 2166 1 23 HELIX 7 7 ASP B 2062 THR B 2078 1 17 HELIX 8 8 ALA B 2082 LEU B 2086 5 5 HELIX 9 9 GLY B 2096 ILE B 2101 1 6 HELIX 10 10 ASP B 2106 SER B 2116 1 11 HELIX 11 11 ASN B 2121 ASN B 2140 1 20 HELIX 12 12 SER B 2144 LYS B 2166 1 23 LINK C GLY C 7 N ALY C 8 1555 1555 1.34 LINK C ALY C 8 N GLY C 9 1555 1555 1.32 LINK C GLY C 11 N ALY C 12 1555 1555 1.33 LINK C ALY C 12 N GLY C 13 1555 1555 1.33 SITE 1 AC1 7 PRO A2084 LEU A2087 PRO A2088 HOH A2317 SITE 2 AC1 7 HOH A2329 HOH A2375 HOH A2411 SITE 1 AC2 3 ASP A2065 LEU A2122 LYS B2064 SITE 1 AC3 4 GLY A2096 PHE B2139 ALY C 8 GLY C 9 SITE 1 AC4 21 PRO A2084 VAL A2089 THR A2138 PHE A2139 SITE 2 AC4 21 ASN A2140 ILE A2146 HOH A2310 HOH A2312 SITE 3 AC4 21 PRO B2084 VAL B2089 VAL B2094 PRO B2095 SITE 4 AC4 21 ASN B2140 ILE B2146 EDO B2201 HOH B2317 SITE 5 AC4 21 HOH C 102 HOH C 107 HOH C 108 HOH C 109 SITE 6 AC4 21 HOH C 110 CRYST1 61.670 32.402 62.033 90.00 109.82 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016215 0.000000 0.005845 0.00000 SCALE2 0.000000 0.030862 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017136 0.00000