HEADER HYDROLASE 09-MAY-14 4QCA TITLE CRYSTAL STRUCTURE OF VACCINIA VIRUS URACIL-DNA GLYCOSYLASE MUTANT TITLE 2 R167AD4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: URACIL-DNA GLYCOSYLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: UDG; COMPND 5 EC: 3.2.2.27; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS; SOURCE 3 ORGANISM_COMMON: VACV; SOURCE 4 ORGANISM_TAXID: 126794; SOURCE 5 STRAIN: WESTERN RESERVE, D4R, VACWR109; SOURCE 6 GENE: ACAM3000_MVA_101, D4, MVA101R, UNG; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS DNA REPAIR ENZYME, COMPONENT OF PROCESSIVITY FACTOR, A20, DNA, KEYWDS 2 POXVIRUS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.SARTMATOVA,T.NASH,N.SCHORMANN,M.NUTH,R.RICCIARDI,S.BANERJEE, AUTHOR 2 D.CHATTOPADHYAY REVDAT 3 20-SEP-23 4QCA 1 REMARK SEQADV LINK REVDAT 2 29-JUN-16 4QCA 1 SOURCE REVDAT 1 13-MAY-15 4QCA 0 JRNL AUTH D.SARTMATOVA,T.NASH,N.SCHORMANN,M.NUTH,R.RICCIARDI, JRNL AUTH 2 S.BANERJEE,D.CHATTOPADHYAY JRNL TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION ANALYSIS JRNL TITL 2 OF THREE RECOMBINANT MUTANTS OF VACCINIA VIRUS URACIL DNA JRNL TITL 3 GLYCOSYLASE. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 69 295 2013 JRNL REFN ESSN 1744-3091 JRNL PMID 23519808 JRNL DOI 10.1107/S1744309113002716 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 80488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4036 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5583 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 302 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7111 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 542 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.544 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7341 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6954 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9985 ; 1.113 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16064 ; 0.757 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 881 ; 5.819 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 322 ;34.767 ;24.255 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1241 ;10.783 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;10.999 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1105 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8145 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1680 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3527 ; 0.981 ; 2.362 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3526 ; 0.981 ; 2.362 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4404 ; 1.672 ; 3.537 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4QCA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000085873. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : CRYO-COOLED DOUBLE CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80549 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 46.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.59700 REMARK 200 R SYM FOR SHELL (I) : 0.59700 REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4DOF, CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2:1:1 PROTEIN SOLUTION/WATER/RESERVOIR REMARK 280 (UNBUFFERED 16% PEG3350, 0.15 M POTASSIUM FLUORIDE, 10% GLYCEROL) REMARK 280 , PH 7.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.07000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.98500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.13400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.98500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.07000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.13400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -2 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG C 185 CG CD NE CZ NH1 NH2 REMARK 470 HIS D 0 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 11 -33.10 72.42 REMARK 500 PHE A 79 -12.67 74.59 REMARK 500 ASP A 138 -66.43 -23.98 REMARK 500 PRO A 182 -18.91 -45.07 REMARK 500 TYR B 11 -45.44 78.66 REMARK 500 ASN B 17 -37.58 -39.04 REMARK 500 PHE B 79 -12.33 73.48 REMARK 500 ASP B 138 -62.51 -28.38 REMARK 500 TYR C 11 -44.37 69.33 REMARK 500 PHE C 79 -10.42 72.68 REMARK 500 PRO C 182 -5.13 -57.32 REMARK 500 TYR D 11 -36.42 77.30 REMARK 500 PHE D 79 -12.93 73.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER C -1 HIS C 0 148.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 303 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 172 O REMARK 620 2 VAL A 174 O 92.7 REMARK 620 3 HOH A 448 O 113.5 78.6 REMARK 620 4 HOH A 530 O 83.4 104.1 162.9 REMARK 620 5 HOH A 541 O 148.6 112.3 90.7 72.6 REMARK 620 6 HOH B 474 O 94.6 165.4 86.9 89.3 65.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DOF RELATED DB: PDB REMARK 900 HIS-TAGGED WILD TYPE VACCINIA VIRUS URACIL-DNA GLYCOSYLASE IN SAME REMARK 900 SPACE GROUP REMARK 900 RELATED ID: 4DOG RELATED DB: PDB REMARK 900 TAG-FREE WILD TYPE VACCINIA VIRUS URACIL-DNA GLYCOSYLASE REMARK 900 RELATED ID: 4LZB RELATED DB: PDB REMARK 900 VACCINIA VIRUS URACIL-DNA GLYCOSYLASE-URACIL COMPLEX REMARK 900 RELATED ID: 4IRB RELATED DB: PDB REMARK 900 DELETION MUTANT OF D4 REMARK 900 RELATED ID: 4QC9 RELATED DB: PDB REMARK 900 RELATED ID: 4QCB RELATED DB: PDB DBREF 4QCA A 1 218 UNP Q91UM2 UNG_VACCA 1 218 DBREF 4QCA B 1 218 UNP Q91UM2 UNG_VACCA 1 218 DBREF 4QCA C 1 218 UNP Q91UM2 UNG_VACCA 1 218 DBREF 4QCA D 1 218 UNP Q91UM2 UNG_VACCA 1 218 SEQADV 4QCA GLY A -2 UNP Q91UM2 EXPRESSION TAG SEQADV 4QCA SER A -1 UNP Q91UM2 EXPRESSION TAG SEQADV 4QCA HIS A 0 UNP Q91UM2 EXPRESSION TAG SEQADV 4QCA ASN A 17 UNP Q91UM2 ASP 17 ENGINEERED MUTATION SEQADV 4QCA ALA A 167 UNP Q91UM2 ARG 167 ENGINEERED MUTATION SEQADV 4QCA GLY B -2 UNP Q91UM2 EXPRESSION TAG SEQADV 4QCA SER B -1 UNP Q91UM2 EXPRESSION TAG SEQADV 4QCA HIS B 0 UNP Q91UM2 EXPRESSION TAG SEQADV 4QCA ASN B 17 UNP Q91UM2 ASP 17 ENGINEERED MUTATION SEQADV 4QCA ALA B 167 UNP Q91UM2 ARG 167 ENGINEERED MUTATION SEQADV 4QCA GLY C -2 UNP Q91UM2 EXPRESSION TAG SEQADV 4QCA SER C -1 UNP Q91UM2 EXPRESSION TAG SEQADV 4QCA HIS C 0 UNP Q91UM2 EXPRESSION TAG SEQADV 4QCA ASN C 17 UNP Q91UM2 ASP 17 ENGINEERED MUTATION SEQADV 4QCA ALA C 167 UNP Q91UM2 ARG 167 ENGINEERED MUTATION SEQADV 4QCA GLY D -2 UNP Q91UM2 EXPRESSION TAG SEQADV 4QCA SER D -1 UNP Q91UM2 EXPRESSION TAG SEQADV 4QCA HIS D 0 UNP Q91UM2 EXPRESSION TAG SEQADV 4QCA ASN D 17 UNP Q91UM2 ASP 17 ENGINEERED MUTATION SEQADV 4QCA ALA D 167 UNP Q91UM2 ARG 167 ENGINEERED MUTATION SEQRES 1 A 221 GLY SER HIS MET ASN SER VAL THR VAL SER HIS ALA PRO SEQRES 2 A 221 TYR THR ILE THR TYR HIS ASN ASP TRP GLU PRO VAL MET SEQRES 3 A 221 SER GLN LEU VAL GLU PHE TYR ASN GLU VAL ALA SER TRP SEQRES 4 A 221 LEU LEU ARG ASP GLU THR SER PRO ILE PRO ASP LYS PHE SEQRES 5 A 221 PHE ILE GLN LEU LYS GLN PRO LEU ARG ASN LYS ARG VAL SEQRES 6 A 221 CYS VAL CYS GLY ILE ASP PRO TYR PRO LYS ASP GLY THR SEQRES 7 A 221 GLY VAL PRO PHE GLU SER PRO ASN PHE THR LYS LYS SER SEQRES 8 A 221 ILE LYS GLU ILE ALA SER SER ILE SER ARG LEU THR GLY SEQRES 9 A 221 VAL ILE ASP TYR LYS GLY TYR ASN LEU ASN ILE ILE ASP SEQRES 10 A 221 GLY VAL ILE PRO TRP ASN TYR TYR LEU SER CYS LYS LEU SEQRES 11 A 221 GLY GLU THR LYS SER HIS ALA ILE TYR TRP ASP LYS ILE SEQRES 12 A 221 SER LYS LEU LEU LEU GLN HIS ILE THR LYS HIS VAL SER SEQRES 13 A 221 VAL LEU TYR CYS LEU GLY LYS THR ASP PHE SER ASN ILE SEQRES 14 A 221 ALA ALA LYS LEU GLU SER PRO VAL THR THR ILE VAL GLY SEQRES 15 A 221 TYR HIS PRO ALA ALA ARG ASP ARG GLN PHE GLU LYS ASP SEQRES 16 A 221 ARG SER PHE GLU ILE ILE ASN VAL LEU LEU GLU LEU ASP SEQRES 17 A 221 ASN LYS ALA PRO ILE ASN TRP ALA GLN GLY PHE ILE TYR SEQRES 1 B 221 GLY SER HIS MET ASN SER VAL THR VAL SER HIS ALA PRO SEQRES 2 B 221 TYR THR ILE THR TYR HIS ASN ASP TRP GLU PRO VAL MET SEQRES 3 B 221 SER GLN LEU VAL GLU PHE TYR ASN GLU VAL ALA SER TRP SEQRES 4 B 221 LEU LEU ARG ASP GLU THR SER PRO ILE PRO ASP LYS PHE SEQRES 5 B 221 PHE ILE GLN LEU LYS GLN PRO LEU ARG ASN LYS ARG VAL SEQRES 6 B 221 CYS VAL CYS GLY ILE ASP PRO TYR PRO LYS ASP GLY THR SEQRES 7 B 221 GLY VAL PRO PHE GLU SER PRO ASN PHE THR LYS LYS SER SEQRES 8 B 221 ILE LYS GLU ILE ALA SER SER ILE SER ARG LEU THR GLY SEQRES 9 B 221 VAL ILE ASP TYR LYS GLY TYR ASN LEU ASN ILE ILE ASP SEQRES 10 B 221 GLY VAL ILE PRO TRP ASN TYR TYR LEU SER CYS LYS LEU SEQRES 11 B 221 GLY GLU THR LYS SER HIS ALA ILE TYR TRP ASP LYS ILE SEQRES 12 B 221 SER LYS LEU LEU LEU GLN HIS ILE THR LYS HIS VAL SER SEQRES 13 B 221 VAL LEU TYR CYS LEU GLY LYS THR ASP PHE SER ASN ILE SEQRES 14 B 221 ALA ALA LYS LEU GLU SER PRO VAL THR THR ILE VAL GLY SEQRES 15 B 221 TYR HIS PRO ALA ALA ARG ASP ARG GLN PHE GLU LYS ASP SEQRES 16 B 221 ARG SER PHE GLU ILE ILE ASN VAL LEU LEU GLU LEU ASP SEQRES 17 B 221 ASN LYS ALA PRO ILE ASN TRP ALA GLN GLY PHE ILE TYR SEQRES 1 C 221 GLY SER HIS MET ASN SER VAL THR VAL SER HIS ALA PRO SEQRES 2 C 221 TYR THR ILE THR TYR HIS ASN ASP TRP GLU PRO VAL MET SEQRES 3 C 221 SER GLN LEU VAL GLU PHE TYR ASN GLU VAL ALA SER TRP SEQRES 4 C 221 LEU LEU ARG ASP GLU THR SER PRO ILE PRO ASP LYS PHE SEQRES 5 C 221 PHE ILE GLN LEU LYS GLN PRO LEU ARG ASN LYS ARG VAL SEQRES 6 C 221 CYS VAL CYS GLY ILE ASP PRO TYR PRO LYS ASP GLY THR SEQRES 7 C 221 GLY VAL PRO PHE GLU SER PRO ASN PHE THR LYS LYS SER SEQRES 8 C 221 ILE LYS GLU ILE ALA SER SER ILE SER ARG LEU THR GLY SEQRES 9 C 221 VAL ILE ASP TYR LYS GLY TYR ASN LEU ASN ILE ILE ASP SEQRES 10 C 221 GLY VAL ILE PRO TRP ASN TYR TYR LEU SER CYS LYS LEU SEQRES 11 C 221 GLY GLU THR LYS SER HIS ALA ILE TYR TRP ASP LYS ILE SEQRES 12 C 221 SER LYS LEU LEU LEU GLN HIS ILE THR LYS HIS VAL SER SEQRES 13 C 221 VAL LEU TYR CYS LEU GLY LYS THR ASP PHE SER ASN ILE SEQRES 14 C 221 ALA ALA LYS LEU GLU SER PRO VAL THR THR ILE VAL GLY SEQRES 15 C 221 TYR HIS PRO ALA ALA ARG ASP ARG GLN PHE GLU LYS ASP SEQRES 16 C 221 ARG SER PHE GLU ILE ILE ASN VAL LEU LEU GLU LEU ASP SEQRES 17 C 221 ASN LYS ALA PRO ILE ASN TRP ALA GLN GLY PHE ILE TYR SEQRES 1 D 221 GLY SER HIS MET ASN SER VAL THR VAL SER HIS ALA PRO SEQRES 2 D 221 TYR THR ILE THR TYR HIS ASN ASP TRP GLU PRO VAL MET SEQRES 3 D 221 SER GLN LEU VAL GLU PHE TYR ASN GLU VAL ALA SER TRP SEQRES 4 D 221 LEU LEU ARG ASP GLU THR SER PRO ILE PRO ASP LYS PHE SEQRES 5 D 221 PHE ILE GLN LEU LYS GLN PRO LEU ARG ASN LYS ARG VAL SEQRES 6 D 221 CYS VAL CYS GLY ILE ASP PRO TYR PRO LYS ASP GLY THR SEQRES 7 D 221 GLY VAL PRO PHE GLU SER PRO ASN PHE THR LYS LYS SER SEQRES 8 D 221 ILE LYS GLU ILE ALA SER SER ILE SER ARG LEU THR GLY SEQRES 9 D 221 VAL ILE ASP TYR LYS GLY TYR ASN LEU ASN ILE ILE ASP SEQRES 10 D 221 GLY VAL ILE PRO TRP ASN TYR TYR LEU SER CYS LYS LEU SEQRES 11 D 221 GLY GLU THR LYS SER HIS ALA ILE TYR TRP ASP LYS ILE SEQRES 12 D 221 SER LYS LEU LEU LEU GLN HIS ILE THR LYS HIS VAL SER SEQRES 13 D 221 VAL LEU TYR CYS LEU GLY LYS THR ASP PHE SER ASN ILE SEQRES 14 D 221 ALA ALA LYS LEU GLU SER PRO VAL THR THR ILE VAL GLY SEQRES 15 D 221 TYR HIS PRO ALA ALA ARG ASP ARG GLN PHE GLU LYS ASP SEQRES 16 D 221 ARG SER PHE GLU ILE ILE ASN VAL LEU LEU GLU LEU ASP SEQRES 17 D 221 ASN LYS ALA PRO ILE ASN TRP ALA GLN GLY PHE ILE TYR HET GOL A 301 6 HET CL A 302 1 HET K A 303 1 HET CL B 301 1 HET GOL C 301 6 HET CL C 302 1 HET GOL D 301 6 HET GOL D 302 6 HET CL D 303 1 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM K POTASSIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 4(C3 H8 O3) FORMUL 6 CL 4(CL 1-) FORMUL 7 K K 1+ FORMUL 14 HOH *542(H2 O) HELIX 1 1 HIS A 16 ASP A 18 5 3 HELIX 2 2 TRP A 19 LEU A 38 1 20 HELIX 3 3 ILE A 45 PHE A 49 5 5 HELIX 4 4 PHE A 50 GLN A 55 5 6 HELIX 5 5 LYS A 86 GLY A 101 1 16 HELIX 6 6 LEU A 110 ILE A 113 5 4 HELIX 7 7 HIS A 133 THR A 149 1 17 HELIX 8 8 GLY A 159 LEU A 170 1 12 HELIX 9 9 ALA A 184 ASP A 192 5 9 HELIX 10 10 ARG A 193 ASP A 205 1 13 HELIX 11 11 ASN A 211 GLN A 214 5 4 HELIX 12 12 TRP B 19 ASP B 40 1 22 HELIX 13 13 ILE B 45 PHE B 49 5 5 HELIX 14 14 PHE B 50 GLN B 55 5 6 HELIX 15 15 LYS B 86 GLY B 101 1 16 HELIX 16 16 LEU B 110 ILE B 113 5 4 HELIX 17 17 HIS B 133 THR B 149 1 17 HELIX 18 18 GLY B 159 LEU B 170 1 12 HELIX 19 19 GLN B 188 ASP B 192 5 5 HELIX 20 20 ARG B 193 ASP B 205 1 13 HELIX 21 21 ASN B 211 GLN B 214 5 4 HELIX 22 22 TRP C 19 LEU C 38 1 20 HELIX 23 23 ILE C 45 PHE C 49 5 5 HELIX 24 24 PHE C 50 GLN C 55 5 6 HELIX 25 25 LYS C 86 GLY C 101 1 16 HELIX 26 26 LEU C 110 ILE C 113 5 4 HELIX 27 27 HIS C 133 LYS C 150 1 18 HELIX 28 28 PHE C 163 LEU C 170 1 8 HELIX 29 29 ALA C 184 ASP C 192 5 9 HELIX 30 30 ARG C 193 ASP C 205 1 13 HELIX 31 31 ASN C 211 GLN C 214 5 4 HELIX 32 32 TRP D 19 ARG D 39 1 21 HELIX 33 33 ILE D 45 PHE D 49 5 5 HELIX 34 34 PHE D 50 GLN D 55 5 6 HELIX 35 35 LYS D 86 GLY D 101 1 16 HELIX 36 36 LEU D 110 ILE D 113 5 4 HELIX 37 37 HIS D 133 VAL D 152 1 20 HELIX 38 38 PHE D 163 LEU D 170 1 8 HELIX 39 39 ALA D 184 GLN D 188 5 5 HELIX 40 40 ARG D 193 ASP D 205 1 13 HELIX 41 41 ASN D 211 GLN D 214 5 4 SHEET 1 A 2 ASN A 2 THR A 5 0 SHEET 2 A 2 THR A 12 TYR A 15 -1 O TYR A 15 N ASN A 2 SHEET 1 B 2 THR A 42 SER A 43 0 SHEET 2 B 2 CYS A 125 LYS A 126 -1 O CYS A 125 N SER A 43 SHEET 1 C 4 VAL A 116 ASN A 120 0 SHEET 2 C 4 VAL A 62 GLY A 66 1 N GLY A 66 O TRP A 119 SHEET 3 C 4 VAL A 154 LEU A 158 1 O TYR A 156 N CYS A 65 SHEET 4 C 4 THR A 175 GLY A 179 1 O THR A 175 N LEU A 155 SHEET 1 D 2 GLY A 107 TYR A 108 0 SHEET 2 D 2 PHE A 216 ILE A 217 -1 O ILE A 217 N GLY A 107 SHEET 1 E 2 MET B 1 THR B 5 0 SHEET 2 E 2 THR B 12 HIS B 16 -1 O TYR B 15 N ASN B 2 SHEET 1 F 2 THR B 42 SER B 43 0 SHEET 2 F 2 CYS B 125 LYS B 126 -1 O CYS B 125 N SER B 43 SHEET 1 G 4 VAL B 116 ASN B 120 0 SHEET 2 G 4 VAL B 62 GLY B 66 1 N GLY B 66 O TRP B 119 SHEET 3 G 4 VAL B 154 LEU B 158 1 O TYR B 156 N CYS B 63 SHEET 4 G 4 THR B 175 GLY B 179 1 O ILE B 177 N LEU B 155 SHEET 1 H 2 GLY B 107 TYR B 108 0 SHEET 2 H 2 PHE B 216 ILE B 217 -1 O ILE B 217 N GLY B 107 SHEET 1 I 2 MET C 1 THR C 5 0 SHEET 2 I 2 THR C 12 HIS C 16 -1 O TYR C 15 N ASN C 2 SHEET 1 J 2 THR C 42 SER C 43 0 SHEET 2 J 2 CYS C 125 LYS C 126 -1 O CYS C 125 N SER C 43 SHEET 1 K 4 VAL C 116 ASN C 120 0 SHEET 2 K 4 VAL C 62 GLY C 66 1 N GLY C 66 O TRP C 119 SHEET 3 K 4 VAL C 154 LEU C 158 1 O TYR C 156 N CYS C 65 SHEET 4 K 4 THR C 175 GLY C 179 1 O ILE C 177 N LEU C 155 SHEET 1 L 2 GLY C 107 TYR C 108 0 SHEET 2 L 2 PHE C 216 ILE C 217 -1 O ILE C 217 N GLY C 107 SHEET 1 M 2 MET D 1 THR D 5 0 SHEET 2 M 2 THR D 12 HIS D 16 -1 O TYR D 15 N ASN D 2 SHEET 1 N 2 THR D 42 SER D 43 0 SHEET 2 N 2 CYS D 125 LYS D 126 -1 O CYS D 125 N SER D 43 SHEET 1 O 4 VAL D 116 ASN D 120 0 SHEET 2 O 4 VAL D 62 GLY D 66 1 N GLY D 66 O TRP D 119 SHEET 3 O 4 VAL D 154 LEU D 158 1 O TYR D 156 N CYS D 65 SHEET 4 O 4 THR D 175 GLY D 179 1 O GLY D 179 N CYS D 157 SHEET 1 P 2 GLY D 107 TYR D 108 0 SHEET 2 P 2 PHE D 216 ILE D 217 -1 O ILE D 217 N GLY D 107 LINK O SER A 172 K K A 303 1555 1555 2.80 LINK O VAL A 174 K K A 303 1555 1555 2.64 LINK K K A 303 O HOH A 448 1555 1555 2.61 LINK K K A 303 O HOH A 530 1555 1555 2.71 LINK K K A 303 O HOH A 541 1555 1555 2.97 LINK K K A 303 O HOH B 474 1555 1555 2.56 CISPEP 1 ALA A 9 PRO A 10 0 4.48 CISPEP 2 SER A 43 PRO A 44 0 -5.30 CISPEP 3 ALA B 9 PRO B 10 0 8.05 CISPEP 4 SER B 43 PRO B 44 0 -7.42 CISPEP 5 ALA C 9 PRO C 10 0 7.86 CISPEP 6 SER C 43 PRO C 44 0 -6.56 CISPEP 7 ALA D 9 PRO D 10 0 5.70 CISPEP 8 SER D 43 PRO D 44 0 -8.47 SITE 1 AC1 10 GLY A 66 ILE A 67 ASP A 68 TYR A 70 SITE 2 AC1 10 PRO A 78 PHE A 79 ASN A 120 HOH A 412 SITE 3 AC1 10 HOH A 492 HOH A 521 SITE 1 AC2 3 LYS A 160 HIS A 181 HOH A 526 SITE 1 AC3 6 SER A 172 VAL A 174 HOH A 448 HOH A 530 SITE 2 AC3 6 HOH A 541 HOH B 474 SITE 1 AC4 3 LYS B 160 TYR B 180 HIS B 181 SITE 1 AC5 9 GLY C 66 ASP C 68 TYR C 70 PRO C 78 SITE 2 AC5 9 PHE C 79 SER C 88 ASN C 120 HOH C 402 SITE 3 AC5 9 HOH C 545 SITE 1 AC6 4 LYS C 160 TYR C 180 HIS C 181 HOH C 541 SITE 1 AC7 9 GLY D 66 ASP D 68 TYR D 70 PRO D 78 SITE 2 AC7 9 PHE D 79 SER D 88 ASN D 120 HIS D 181 SITE 3 AC7 9 HOH D 402 SITE 1 AC8 11 ALA C 167 ALA C 168 LYS C 169 LEU C 170 SITE 2 AC8 11 GLU C 171 ALA D 167 ALA D 168 LYS D 169 SITE 3 AC8 11 LEU D 170 GLU D 171 HOH D 481 SITE 1 AC9 3 LYS D 160 TYR D 180 HIS D 181 CRYST1 72.140 118.268 121.970 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013862 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008455 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008199 0.00000