data_4QD3 # _entry.id 4QD3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4QD3 pdb_00004qd3 10.2210/pdb4qd3/pdb RCSB RCSB085902 ? ? WWPDB D_1000085902 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4JC4 _pdbx_database_related.details 'Model PDB' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4QD3 _pdbx_database_status.recvd_initial_deposition_date 2014-05-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Singh, A.' 1 'Gautam, L.' 2 'Sinha, M.' 3 'Bhushan, A.' 4 'Kaur, P.' 5 'Sharma, S.' 6 'Singh, T.P.' 7 # _citation.id primary _citation.title ;Structural and binding studies of peptidyl-tRNA hydrolase from Pseudomonas aeruginosa provide a platform for the structure-based inhibitor design against peptidyl-tRNA hydrolase ; _citation.journal_abbrev Biochem.J. _citation.journal_volume 463 _citation.page_first 329 _citation.page_last 337 _citation.year 2014 _citation.journal_id_ASTM BIJOAK _citation.country UK _citation.journal_id_ISSN 0264-6021 _citation.journal_id_CSD 0043 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25101795 _citation.pdbx_database_id_DOI 10.1042/BJ20140631 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Singh, A.' 1 ? primary 'Kumar, A.' 2 ? primary 'Gautam, L.' 3 ? primary 'Sharma, P.' 4 ? primary 'Sinha, M.' 5 ? primary 'Bhushan, A.' 6 ? primary 'Kaur, P.' 7 ? primary 'Sharma, S.' 8 ? primary 'Arora, A.' 9 ? primary 'Singh, T.P.' 10 ? # _cell.entry_id 4QD3 _cell.length_a 64.111 _cell.length_b 64.111 _cell.length_c 156.620 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4QD3 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peptidyl-tRNA hydrolase' 20832.793 1 3.1.1.29 ? ? ? 2 non-polymer syn '4-amino-1-(beta-D-ribofuranosyl)-1,3,5-triazin-2(1H)-one' 244.205 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 201 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name PTH # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTAVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALA GFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQ ELLDTSIDFALGVLPEMLAGDWTRAMQKLHSQKA ; _entity_poly.pdbx_seq_one_letter_code_can ;MTAVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALA GFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQ ELLDTSIDFALGVLPEMLAGDWTRAMQKLHSQKA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 ALA n 1 4 VAL n 1 5 GLN n 1 6 LEU n 1 7 ILE n 1 8 VAL n 1 9 GLY n 1 10 LEU n 1 11 GLY n 1 12 ASN n 1 13 PRO n 1 14 GLY n 1 15 PRO n 1 16 GLU n 1 17 TYR n 1 18 ASP n 1 19 GLN n 1 20 THR n 1 21 ARG n 1 22 HIS n 1 23 ASN n 1 24 ALA n 1 25 GLY n 1 26 ALA n 1 27 LEU n 1 28 PHE n 1 29 VAL n 1 30 GLU n 1 31 ARG n 1 32 LEU n 1 33 ALA n 1 34 HIS n 1 35 ALA n 1 36 GLN n 1 37 GLY n 1 38 VAL n 1 39 SER n 1 40 LEU n 1 41 VAL n 1 42 ALA n 1 43 ASP n 1 44 ARG n 1 45 LYS n 1 46 TYR n 1 47 PHE n 1 48 GLY n 1 49 LEU n 1 50 VAL n 1 51 GLY n 1 52 LYS n 1 53 PHE n 1 54 SER n 1 55 HIS n 1 56 GLN n 1 57 GLY n 1 58 LYS n 1 59 ASP n 1 60 VAL n 1 61 ARG n 1 62 LEU n 1 63 LEU n 1 64 ILE n 1 65 PRO n 1 66 THR n 1 67 THR n 1 68 TYR n 1 69 MET n 1 70 ASN n 1 71 ARG n 1 72 SER n 1 73 GLY n 1 74 GLN n 1 75 SER n 1 76 VAL n 1 77 ALA n 1 78 ALA n 1 79 LEU n 1 80 ALA n 1 81 GLY n 1 82 PHE n 1 83 PHE n 1 84 ARG n 1 85 ILE n 1 86 ALA n 1 87 PRO n 1 88 ASP n 1 89 ALA n 1 90 ILE n 1 91 LEU n 1 92 VAL n 1 93 ALA n 1 94 HIS n 1 95 ASP n 1 96 GLU n 1 97 LEU n 1 98 ASP n 1 99 MET n 1 100 PRO n 1 101 PRO n 1 102 GLY n 1 103 VAL n 1 104 ALA n 1 105 LYS n 1 106 LEU n 1 107 LYS n 1 108 THR n 1 109 GLY n 1 110 GLY n 1 111 GLY n 1 112 HIS n 1 113 GLY n 1 114 GLY n 1 115 HIS n 1 116 ASN n 1 117 GLY n 1 118 LEU n 1 119 ARG n 1 120 ASP n 1 121 ILE n 1 122 ILE n 1 123 ALA n 1 124 GLN n 1 125 LEU n 1 126 GLY n 1 127 ASN n 1 128 GLN n 1 129 ASN n 1 130 SER n 1 131 PHE n 1 132 HIS n 1 133 ARG n 1 134 LEU n 1 135 ARG n 1 136 LEU n 1 137 GLY n 1 138 ILE n 1 139 GLY n 1 140 HIS n 1 141 PRO n 1 142 GLY n 1 143 HIS n 1 144 SER n 1 145 SER n 1 146 LEU n 1 147 VAL n 1 148 SER n 1 149 GLY n 1 150 TYR n 1 151 VAL n 1 152 LEU n 1 153 GLY n 1 154 ARG n 1 155 ALA n 1 156 PRO n 1 157 ARG n 1 158 SER n 1 159 GLU n 1 160 GLN n 1 161 GLU n 1 162 LEU n 1 163 LEU n 1 164 ASP n 1 165 THR n 1 166 SER n 1 167 ILE n 1 168 ASP n 1 169 PHE n 1 170 ALA n 1 171 LEU n 1 172 GLY n 1 173 VAL n 1 174 LEU n 1 175 PRO n 1 176 GLU n 1 177 MET n 1 178 LEU n 1 179 ALA n 1 180 GLY n 1 181 ASP n 1 182 TRP n 1 183 THR n 1 184 ARG n 1 185 ALA n 1 186 MET n 1 187 GLN n 1 188 LYS n 1 189 LEU n 1 190 HIS n 1 191 SER n 1 192 GLN n 1 193 LYS n 1 194 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PA4672, pth' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain PAO1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas aeruginosa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 208964 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Bl21(De3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a+ _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PTH_PSEAE _struct_ref.pdbx_db_accession Q9HVC3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTAVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALA GFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQ ELLDTSIDFALGVLPEMLAGDWTRAMQKLHSQKA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4QD3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 194 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9HVC3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 194 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 194 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5AE non-polymer . '4-amino-1-(beta-D-ribofuranosyl)-1,3,5-triazin-2(1H)-one' 5-azacytidine 'C8 H12 N4 O5' 244.205 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4QD3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.23 _exptl_crystal.density_percent_sol 44.84 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details 'PEG 4000, Isopropanol, HEPES buffer, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 77 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2013-11-02 _diffrn_detector.details Mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Graphite _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97 # _reflns.entry_id 4QD3 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 32.08 _reflns.d_resolution_high 1.89 _reflns.number_obs 16071 _reflns.number_all 16071 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.075 _reflns.pdbx_netI_over_sigmaI 51.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.89 _reflns_shell.d_res_low 1.92 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.491 _reflns_shell.meanI_over_sigI_obs 4.5 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4QD3 _refine.ls_number_reflns_obs 15212 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.08 _refine.ls_d_res_high 1.89 _refine.ls_percent_reflns_obs 99.93 _refine.ls_R_factor_obs 0.18897 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18642 _refine.ls_R_factor_R_free 0.23803 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 799 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.938 _refine.B_iso_mean 28.774 _refine.aniso_B[1][1] 0.40 _refine.aniso_B[2][2] 0.40 _refine.aniso_B[3][3] -1.31 _refine.aniso_B[1][2] 0.40 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 4JC4 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.160 _refine.pdbx_overall_ESU_R_Free 0.153 _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1467 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 23 _refine_hist.number_atoms_solvent 201 _refine_hist.number_atoms_total 1691 _refine_hist.d_res_high 1.89 _refine_hist.d_res_low 32.08 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.014 0.019 ? 1521 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.000 0.020 ? 1474 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.305 1.974 ? 2056 ? 'X-RAY DIFFRACTION' r_angle_other_deg 3.648 3.000 ? 3374 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 4.884 5.000 ? 193 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 43.703 23.030 ? 66 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 14.332 15.000 ? 244 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 14.817 15.000 ? 12 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.109 0.200 ? 226 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.005 0.021 ? 1746 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.006 0.020 ? 366 ? 'X-RAY DIFFRACTION' r_mcbond_it 1.226 2.646 ? 775 ? 'X-RAY DIFFRACTION' r_mcbond_other 1.222 2.642 ? 774 ? 'X-RAY DIFFRACTION' r_mcangle_it 2.049 3.956 ? 967 ? 'X-RAY DIFFRACTION' r_mcangle_other 2.050 3.961 ? 968 ? 'X-RAY DIFFRACTION' r_scbond_it 1.550 2.929 ? 746 ? 'X-RAY DIFFRACTION' r_scbond_other 1.544 2.929 ? 746 ? 'X-RAY DIFFRACTION' r_scangle_other 2.577 4.292 ? 1090 ? 'X-RAY DIFFRACTION' r_long_range_B_refined 5.590 22.908 ? 1821 ? 'X-RAY DIFFRACTION' r_long_range_B_other 5.586 22.897 ? 1820 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.890 _refine_ls_shell.d_res_low 1.939 _refine_ls_shell.number_reflns_R_work 1094 _refine_ls_shell.R_factor_R_work 0.253 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.297 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 60 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 4QD3 _struct.title 'Crystal structure of Peptidyl-tRNA hydrolase from Pseudomonas aeruginosa with 5-azacytidine at 1.89 Angstrom resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4QD3 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text hydrolase # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 20 ? HIS A 22 ? THR A 20 HIS A 22 5 ? 3 HELX_P HELX_P2 2 ASN A 23 ? GLY A 37 ? ASN A 23 GLY A 37 1 ? 15 HELX_P HELX_P3 3 ARG A 44 ? TYR A 46 ? ARG A 44 TYR A 46 5 ? 3 HELX_P HELX_P4 4 TYR A 68 ? ASN A 70 ? TYR A 68 ASN A 70 5 ? 3 HELX_P HELX_P5 5 ARG A 71 ? PHE A 83 ? ARG A 71 PHE A 83 1 ? 13 HELX_P HELX_P6 6 ALA A 86 ? ASP A 88 ? ALA A 86 ASP A 88 5 ? 3 HELX_P HELX_P7 7 HIS A 115 ? LEU A 125 ? HIS A 115 LEU A 125 1 ? 11 HELX_P HELX_P8 8 HIS A 143 ? SER A 145 ? HIS A 143 SER A 145 5 ? 3 HELX_P HELX_P9 9 LEU A 146 ? LEU A 152 ? LEU A 146 LEU A 152 1 ? 7 HELX_P HELX_P10 10 PRO A 156 ? VAL A 173 ? PRO A 156 VAL A 173 1 ? 18 HELX_P HELX_P11 11 VAL A 173 ? GLY A 180 ? VAL A 173 GLY A 180 1 ? 8 HELX_P HELX_P12 12 ASP A 181 ? HIS A 190 ? ASP A 181 HIS A 190 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 41 ? ASP A 43 ? VAL A 41 ASP A 43 A 2 GLY A 48 ? HIS A 55 ? GLY A 48 HIS A 55 A 3 LYS A 58 ? PRO A 65 ? LYS A 58 PRO A 65 A 4 LEU A 6 ? GLY A 9 ? LEU A 6 GLY A 9 A 5 ILE A 90 ? GLU A 96 ? ILE A 90 GLU A 96 A 6 HIS A 132 ? GLY A 137 ? HIS A 132 GLY A 137 A 7 ALA A 104 ? THR A 108 ? ALA A 104 THR A 108 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 41 ? N VAL A 41 O VAL A 50 ? O VAL A 50 A 2 3 N PHE A 53 ? N PHE A 53 O VAL A 60 ? O VAL A 60 A 3 4 O LEU A 63 ? O LEU A 63 N GLY A 9 ? N GLY A 9 A 4 5 N VAL A 8 ? N VAL A 8 O ALA A 93 ? O ALA A 93 A 5 6 N HIS A 94 ? N HIS A 94 O LEU A 136 ? O LEU A 136 A 6 7 O ARG A 135 ? O ARG A 135 N LYS A 105 ? N LYS A 105 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 5AE 201 ? 13 'BINDING SITE FOR RESIDUE 5AE A 201' AC2 Software A GOL 202 ? 7 'BINDING SITE FOR RESIDUE GOL A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 HIS A 22 ? HIS A 22 . ? 1_555 ? 2 AC1 13 LEU A 97 ? LEU A 97 . ? 1_555 ? 3 AC1 13 GLY A 113 ? GLY A 113 . ? 1_555 ? 4 AC1 13 GLY A 114 ? GLY A 114 . ? 1_555 ? 5 AC1 13 HIS A 115 ? HIS A 115 . ? 1_555 ? 6 AC1 13 ASN A 116 ? ASN A 116 . ? 1_555 ? 7 AC1 13 VAL A 147 ? VAL A 147 . ? 1_555 ? 8 AC1 13 SER A 148 ? SER A 148 . ? 1_555 ? 9 AC1 13 VAL A 151 ? VAL A 151 . ? 1_555 ? 10 AC1 13 GLU A 161 ? GLU A 161 . ? 6_555 ? 11 AC1 13 GOL C . ? GOL A 202 . ? 1_555 ? 12 AC1 13 HOH D . ? HOH A 314 . ? 1_555 ? 13 AC1 13 HOH D . ? HOH A 474 . ? 1_555 ? 14 AC2 7 ASP A 95 ? ASP A 95 . ? 1_555 ? 15 AC2 7 GLU A 96 ? GLU A 96 . ? 1_555 ? 16 AC2 7 LEU A 97 ? LEU A 97 . ? 1_555 ? 17 AC2 7 GLY A 113 ? GLY A 113 . ? 1_555 ? 18 AC2 7 5AE B . ? 5AE A 201 . ? 1_555 ? 19 AC2 7 HOH D . ? HOH A 315 . ? 1_555 ? 20 AC2 7 HOH D . ? HOH A 474 . ? 1_555 ? # _database_PDB_matrix.entry_id 4QD3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4QD3 _atom_sites.fract_transf_matrix[1][1] 0.015598 _atom_sites.fract_transf_matrix[1][2] 0.009005 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018011 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006385 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 HIS 22 22 22 HIS HIS A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 HIS 34 34 34 HIS HIS A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 TYR 46 46 46 TYR TYR A . n A 1 47 PHE 47 47 47 PHE PHE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 HIS 55 55 55 HIS HIS A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 PRO 65 65 65 PRO PRO A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 MET 69 69 69 MET MET A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 GLN 74 74 74 GLN GLN A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 PHE 83 83 83 PHE PHE A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 MET 99 99 99 MET MET A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 THR 108 108 108 THR THR A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 HIS 112 112 112 HIS HIS A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 HIS 115 115 115 HIS HIS A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 ARG 119 119 119 ARG ARG A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 ILE 121 121 121 ILE ILE A . n A 1 122 ILE 122 122 122 ILE ILE A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 GLN 124 124 124 GLN GLN A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 ASN 127 127 127 ASN ASN A . n A 1 128 GLN 128 128 128 GLN GLN A . n A 1 129 ASN 129 129 129 ASN ASN A . n A 1 130 SER 130 130 130 SER SER A . n A 1 131 PHE 131 131 131 PHE PHE A . n A 1 132 HIS 132 132 132 HIS HIS A . n A 1 133 ARG 133 133 133 ARG ARG A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 ARG 135 135 135 ARG ARG A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 GLY 137 137 137 GLY GLY A . n A 1 138 ILE 138 138 138 ILE ILE A . n A 1 139 GLY 139 139 139 GLY GLY A . n A 1 140 HIS 140 140 140 HIS HIS A . n A 1 141 PRO 141 141 141 PRO PRO A . n A 1 142 GLY 142 142 142 GLY GLY A . n A 1 143 HIS 143 143 143 HIS HIS A . n A 1 144 SER 144 144 144 SER SER A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 LEU 146 146 146 LEU LEU A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 SER 148 148 148 SER SER A . n A 1 149 GLY 149 149 149 GLY GLY A . n A 1 150 TYR 150 150 150 TYR TYR A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 LEU 152 152 152 LEU LEU A . n A 1 153 GLY 153 153 153 GLY GLY A . n A 1 154 ARG 154 154 154 ARG ARG A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 PRO 156 156 156 PRO PRO A . n A 1 157 ARG 157 157 157 ARG ARG A . n A 1 158 SER 158 158 158 SER SER A . n A 1 159 GLU 159 159 159 GLU GLU A . n A 1 160 GLN 160 160 160 GLN GLN A . n A 1 161 GLU 161 161 161 GLU GLU A . n A 1 162 LEU 162 162 162 LEU LEU A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 ASP 164 164 164 ASP ASP A . n A 1 165 THR 165 165 165 THR THR A . n A 1 166 SER 166 166 166 SER SER A . n A 1 167 ILE 167 167 167 ILE ILE A . n A 1 168 ASP 168 168 168 ASP ASP A . n A 1 169 PHE 169 169 169 PHE PHE A . n A 1 170 ALA 170 170 170 ALA ALA A . n A 1 171 LEU 171 171 171 LEU LEU A . n A 1 172 GLY 172 172 172 GLY GLY A . n A 1 173 VAL 173 173 173 VAL VAL A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 PRO 175 175 175 PRO PRO A . n A 1 176 GLU 176 176 176 GLU GLU A . n A 1 177 MET 177 177 177 MET MET A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 ALA 179 179 179 ALA ALA A . n A 1 180 GLY 180 180 180 GLY GLY A . n A 1 181 ASP 181 181 181 ASP ASP A . n A 1 182 TRP 182 182 182 TRP TRP A . n A 1 183 THR 183 183 183 THR THR A . n A 1 184 ARG 184 184 184 ARG ARG A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 MET 186 186 186 MET MET A . n A 1 187 GLN 187 187 187 GLN GLN A . n A 1 188 LYS 188 188 188 LYS LYS A . n A 1 189 LEU 189 189 189 LEU LEU A . n A 1 190 HIS 190 190 190 HIS HIS A . n A 1 191 SER 191 191 191 SER SER A . n A 1 192 GLN 192 192 192 GLN GLN A . n A 1 193 LYS 193 193 193 LYS LYS A . n A 1 194 ALA 194 194 194 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5AE 1 201 1 5AE ZZZ A . C 3 GOL 1 202 1 GOL GOL A . D 4 HOH 1 301 1 HOH HOH A . D 4 HOH 2 302 2 HOH HOH A . D 4 HOH 3 303 3 HOH HOH A . D 4 HOH 4 304 4 HOH HOH A . D 4 HOH 5 305 5 HOH HOH A . D 4 HOH 6 306 6 HOH HOH A . D 4 HOH 7 307 7 HOH HOH A . D 4 HOH 8 308 8 HOH HOH A . D 4 HOH 9 309 10 HOH HOH A . D 4 HOH 10 310 11 HOH HOH A . D 4 HOH 11 311 12 HOH HOH A . D 4 HOH 12 312 13 HOH HOH A . D 4 HOH 13 313 14 HOH HOH A . D 4 HOH 14 314 15 HOH HOH A . D 4 HOH 15 315 16 HOH HOH A . D 4 HOH 16 316 17 HOH HOH A . D 4 HOH 17 317 18 HOH HOH A . D 4 HOH 18 318 19 HOH HOH A . D 4 HOH 19 319 20 HOH HOH A . D 4 HOH 20 320 21 HOH HOH A . D 4 HOH 21 321 22 HOH HOH A . D 4 HOH 22 322 23 HOH HOH A . D 4 HOH 23 323 24 HOH HOH A . D 4 HOH 24 324 25 HOH HOH A . D 4 HOH 25 325 26 HOH HOH A . D 4 HOH 26 326 27 HOH HOH A . D 4 HOH 27 327 28 HOH HOH A . D 4 HOH 28 328 29 HOH HOH A . D 4 HOH 29 329 30 HOH HOH A . D 4 HOH 30 330 31 HOH HOH A . D 4 HOH 31 331 32 HOH HOH A . D 4 HOH 32 332 33 HOH HOH A . D 4 HOH 33 333 34 HOH HOH A . D 4 HOH 34 334 35 HOH HOH A . D 4 HOH 35 335 36 HOH HOH A . D 4 HOH 36 336 37 HOH HOH A . D 4 HOH 37 337 38 HOH HOH A . D 4 HOH 38 338 39 HOH HOH A . D 4 HOH 39 339 40 HOH HOH A . D 4 HOH 40 340 41 HOH HOH A . D 4 HOH 41 341 42 HOH HOH A . D 4 HOH 42 342 43 HOH HOH A . D 4 HOH 43 343 44 HOH HOH A . D 4 HOH 44 344 45 HOH HOH A . D 4 HOH 45 345 46 HOH HOH A . D 4 HOH 46 346 49 HOH HOH A . D 4 HOH 47 347 50 HOH HOH A . D 4 HOH 48 348 51 HOH HOH A . D 4 HOH 49 349 52 HOH HOH A . D 4 HOH 50 350 53 HOH HOH A . D 4 HOH 51 351 54 HOH HOH A . D 4 HOH 52 352 55 HOH HOH A . D 4 HOH 53 353 56 HOH HOH A . D 4 HOH 54 354 57 HOH HOH A . D 4 HOH 55 355 58 HOH HOH A . D 4 HOH 56 356 59 HOH HOH A . D 4 HOH 57 357 60 HOH HOH A . D 4 HOH 58 358 61 HOH HOH A . D 4 HOH 59 359 62 HOH HOH A . D 4 HOH 60 360 63 HOH HOH A . D 4 HOH 61 361 64 HOH HOH A . D 4 HOH 62 362 65 HOH HOH A . D 4 HOH 63 363 67 HOH HOH A . D 4 HOH 64 364 69 HOH HOH A . D 4 HOH 65 365 70 HOH HOH A . D 4 HOH 66 366 71 HOH HOH A . D 4 HOH 67 367 72 HOH HOH A . D 4 HOH 68 368 73 HOH HOH A . D 4 HOH 69 369 74 HOH HOH A . D 4 HOH 70 370 75 HOH HOH A . D 4 HOH 71 371 76 HOH HOH A . D 4 HOH 72 372 77 HOH HOH A . D 4 HOH 73 373 78 HOH HOH A . D 4 HOH 74 374 79 HOH HOH A . D 4 HOH 75 375 80 HOH HOH A . D 4 HOH 76 376 82 HOH HOH A . D 4 HOH 77 377 83 HOH HOH A . D 4 HOH 78 378 84 HOH HOH A . D 4 HOH 79 379 85 HOH HOH A . D 4 HOH 80 380 86 HOH HOH A . D 4 HOH 81 381 87 HOH HOH A . D 4 HOH 82 382 88 HOH HOH A . D 4 HOH 83 383 89 HOH HOH A . D 4 HOH 84 384 90 HOH HOH A . D 4 HOH 85 385 91 HOH HOH A . D 4 HOH 86 386 92 HOH HOH A . D 4 HOH 87 387 94 HOH HOH A . D 4 HOH 88 388 95 HOH HOH A . D 4 HOH 89 389 96 HOH HOH A . D 4 HOH 90 390 97 HOH HOH A . D 4 HOH 91 391 98 HOH HOH A . D 4 HOH 92 392 99 HOH HOH A . D 4 HOH 93 393 101 HOH HOH A . D 4 HOH 94 394 102 HOH HOH A . D 4 HOH 95 395 103 HOH HOH A . D 4 HOH 96 396 104 HOH HOH A . D 4 HOH 97 397 105 HOH HOH A . D 4 HOH 98 398 106 HOH HOH A . D 4 HOH 99 399 109 HOH HOH A . D 4 HOH 100 400 111 HOH HOH A . D 4 HOH 101 401 112 HOH HOH A . D 4 HOH 102 402 113 HOH HOH A . D 4 HOH 103 403 114 HOH HOH A . D 4 HOH 104 404 115 HOH HOH A . D 4 HOH 105 405 116 HOH HOH A . D 4 HOH 106 406 117 HOH HOH A . D 4 HOH 107 407 120 HOH HOH A . D 4 HOH 108 408 122 HOH HOH A . D 4 HOH 109 409 123 HOH HOH A . D 4 HOH 110 410 124 HOH HOH A . D 4 HOH 111 411 125 HOH HOH A . D 4 HOH 112 412 126 HOH HOH A . D 4 HOH 113 413 127 HOH HOH A . D 4 HOH 114 414 130 HOH HOH A . D 4 HOH 115 415 131 HOH HOH A . D 4 HOH 116 416 132 HOH HOH A . D 4 HOH 117 417 136 HOH HOH A . D 4 HOH 118 418 137 HOH HOH A . D 4 HOH 119 419 141 HOH HOH A . D 4 HOH 120 420 142 HOH HOH A . D 4 HOH 121 421 143 HOH HOH A . D 4 HOH 122 422 144 HOH HOH A . D 4 HOH 123 423 146 HOH HOH A . D 4 HOH 124 424 149 HOH HOH A . D 4 HOH 125 425 152 HOH HOH A . D 4 HOH 126 426 153 HOH HOH A . D 4 HOH 127 427 154 HOH HOH A . D 4 HOH 128 428 157 HOH HOH A . D 4 HOH 129 429 158 HOH HOH A . D 4 HOH 130 430 159 HOH HOH A . D 4 HOH 131 431 160 HOH HOH A . D 4 HOH 132 432 164 HOH HOH A . D 4 HOH 133 433 165 HOH HOH A . D 4 HOH 134 434 166 HOH HOH A . D 4 HOH 135 435 167 HOH HOH A . D 4 HOH 136 436 168 HOH HOH A . D 4 HOH 137 437 169 HOH HOH A . D 4 HOH 138 438 172 HOH HOH A . D 4 HOH 139 439 173 HOH HOH A . D 4 HOH 140 440 175 HOH HOH A . D 4 HOH 141 441 176 HOH HOH A . D 4 HOH 142 442 177 HOH HOH A . D 4 HOH 143 443 178 HOH HOH A . D 4 HOH 144 444 179 HOH HOH A . D 4 HOH 145 445 180 HOH HOH A . D 4 HOH 146 446 181 HOH HOH A . D 4 HOH 147 447 182 HOH HOH A . D 4 HOH 148 448 183 HOH HOH A . D 4 HOH 149 449 184 HOH HOH A . D 4 HOH 150 450 185 HOH HOH A . D 4 HOH 151 451 186 HOH HOH A . D 4 HOH 152 452 187 HOH HOH A . D 4 HOH 153 453 188 HOH HOH A . D 4 HOH 154 454 189 HOH HOH A . D 4 HOH 155 455 190 HOH HOH A . D 4 HOH 156 456 193 HOH HOH A . D 4 HOH 157 457 196 HOH HOH A . D 4 HOH 158 458 197 HOH HOH A . D 4 HOH 159 459 199 HOH HOH A . D 4 HOH 160 460 201 HOH HOH A . D 4 HOH 161 461 202 HOH HOH A . D 4 HOH 162 462 203 HOH HOH A . D 4 HOH 163 463 204 HOH HOH A . D 4 HOH 164 464 205 HOH HOH A . D 4 HOH 165 465 207 HOH HOH A . D 4 HOH 166 466 208 HOH HOH A . D 4 HOH 167 467 209 HOH HOH A . D 4 HOH 168 468 210 HOH HOH A . D 4 HOH 169 469 211 HOH HOH A . D 4 HOH 170 470 212 HOH HOH A . D 4 HOH 171 471 213 HOH HOH A . D 4 HOH 172 472 214 HOH HOH A . D 4 HOH 173 473 215 HOH HOH A . D 4 HOH 174 474 216 HOH HOH A . D 4 HOH 175 475 217 HOH HOH A . D 4 HOH 176 476 218 HOH HOH A . D 4 HOH 177 477 219 HOH HOH A . D 4 HOH 178 478 220 HOH HOH A . D 4 HOH 179 479 221 HOH HOH A . D 4 HOH 180 480 222 HOH HOH A . D 4 HOH 181 481 223 HOH HOH A . D 4 HOH 182 482 224 HOH HOH A . D 4 HOH 183 483 225 HOH HOH A . D 4 HOH 184 484 226 HOH HOH A . D 4 HOH 185 485 227 HOH HOH A . D 4 HOH 186 486 228 HOH HOH A . D 4 HOH 187 487 229 HOH HOH A . D 4 HOH 188 488 233 HOH HOH A . D 4 HOH 189 489 234 HOH HOH A . D 4 HOH 190 490 235 HOH HOH A . D 4 HOH 191 491 236 HOH HOH A . D 4 HOH 192 492 1 HOH HOH A . D 4 HOH 193 493 2 HOH HOH A . D 4 HOH 194 494 3 HOH HOH A . D 4 HOH 195 495 4 HOH HOH A . D 4 HOH 196 496 5 HOH HOH A . D 4 HOH 197 497 1 HOH HOH A . D 4 HOH 198 498 2 HOH HOH A . D 4 HOH 199 499 3 HOH HOH A . D 4 HOH 200 500 4 HOH HOH A . D 4 HOH 201 501 1 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-06-25 2 'Structure model' 1 1 2014-11-12 3 'Structure model' 1 2 2023-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 AMoRE phasing . ? 2 REFMAC refinement 5.7.0032 ? 3 HKL-2000 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 125 ? ? -91.02 31.62 2 1 SER A 130 ? ? -85.39 49.79 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5AE O2 O N N 1 5AE C2 C N N 2 5AE N3 N N N 3 5AE C4 C N N 4 5AE N4 N N N 5 5AE N5 N N N 6 5AE N1 N N N 7 5AE C6 C N N 8 5AE "C1'" C N R 9 5AE "O4'" O N N 10 5AE "C4'" C N R 11 5AE "C5'" C N N 12 5AE "O5'" O N N 13 5AE "C3'" C N S 14 5AE "O3'" O N N 15 5AE "C2'" C N R 16 5AE "O2'" O N N 17 5AE H1 H N N 18 5AE H2 H N N 19 5AE H3 H N N 20 5AE H4 H N N 21 5AE H5 H N N 22 5AE H6 H N N 23 5AE H7 H N N 24 5AE H8 H N N 25 5AE H9 H N N 26 5AE H10 H N N 27 5AE H11 H N N 28 5AE H12 H N N 29 ALA N N N N 30 ALA CA C N S 31 ALA C C N N 32 ALA O O N N 33 ALA CB C N N 34 ALA OXT O N N 35 ALA H H N N 36 ALA H2 H N N 37 ALA HA H N N 38 ALA HB1 H N N 39 ALA HB2 H N N 40 ALA HB3 H N N 41 ALA HXT H N N 42 ARG N N N N 43 ARG CA C N S 44 ARG C C N N 45 ARG O O N N 46 ARG CB C N N 47 ARG CG C N N 48 ARG CD C N N 49 ARG NE N N N 50 ARG CZ C N N 51 ARG NH1 N N N 52 ARG NH2 N N N 53 ARG OXT O N N 54 ARG H H N N 55 ARG H2 H N N 56 ARG HA H N N 57 ARG HB2 H N N 58 ARG HB3 H N N 59 ARG HG2 H N N 60 ARG HG3 H N N 61 ARG HD2 H N N 62 ARG HD3 H N N 63 ARG HE H N N 64 ARG HH11 H N N 65 ARG HH12 H N N 66 ARG HH21 H N N 67 ARG HH22 H N N 68 ARG HXT H N N 69 ASN N N N N 70 ASN CA C N S 71 ASN C C N N 72 ASN O O N N 73 ASN CB C N N 74 ASN CG C N N 75 ASN OD1 O N N 76 ASN ND2 N N N 77 ASN OXT O N N 78 ASN H H N N 79 ASN H2 H N N 80 ASN HA H N N 81 ASN HB2 H N N 82 ASN HB3 H N N 83 ASN HD21 H N N 84 ASN HD22 H N N 85 ASN HXT H N N 86 ASP N N N N 87 ASP CA C N S 88 ASP C C N N 89 ASP O O N N 90 ASP CB C N N 91 ASP CG C N N 92 ASP OD1 O N N 93 ASP OD2 O N N 94 ASP OXT O N N 95 ASP H H N N 96 ASP H2 H N N 97 ASP HA H N N 98 ASP HB2 H N N 99 ASP HB3 H N N 100 ASP HD2 H N N 101 ASP HXT H N N 102 GLN N N N N 103 GLN CA C N S 104 GLN C C N N 105 GLN O O N N 106 GLN CB C N N 107 GLN CG C N N 108 GLN CD C N N 109 GLN OE1 O N N 110 GLN NE2 N N N 111 GLN OXT O N N 112 GLN H H N N 113 GLN H2 H N N 114 GLN HA H N N 115 GLN HB2 H N N 116 GLN HB3 H N N 117 GLN HG2 H N N 118 GLN HG3 H N N 119 GLN HE21 H N N 120 GLN HE22 H N N 121 GLN HXT H N N 122 GLU N N N N 123 GLU CA C N S 124 GLU C C N N 125 GLU O O N N 126 GLU CB C N N 127 GLU CG C N N 128 GLU CD C N N 129 GLU OE1 O N N 130 GLU OE2 O N N 131 GLU OXT O N N 132 GLU H H N N 133 GLU H2 H N N 134 GLU HA H N N 135 GLU HB2 H N N 136 GLU HB3 H N N 137 GLU HG2 H N N 138 GLU HG3 H N N 139 GLU HE2 H N N 140 GLU HXT H N N 141 GLY N N N N 142 GLY CA C N N 143 GLY C C N N 144 GLY O O N N 145 GLY OXT O N N 146 GLY H H N N 147 GLY H2 H N N 148 GLY HA2 H N N 149 GLY HA3 H N N 150 GLY HXT H N N 151 GOL C1 C N N 152 GOL O1 O N N 153 GOL C2 C N N 154 GOL O2 O N N 155 GOL C3 C N N 156 GOL O3 O N N 157 GOL H11 H N N 158 GOL H12 H N N 159 GOL HO1 H N N 160 GOL H2 H N N 161 GOL HO2 H N N 162 GOL H31 H N N 163 GOL H32 H N N 164 GOL HO3 H N N 165 HIS N N N N 166 HIS CA C N S 167 HIS C C N N 168 HIS O O N N 169 HIS CB C N N 170 HIS CG C Y N 171 HIS ND1 N Y N 172 HIS CD2 C Y N 173 HIS CE1 C Y N 174 HIS NE2 N Y N 175 HIS OXT O N N 176 HIS H H N N 177 HIS H2 H N N 178 HIS HA H N N 179 HIS HB2 H N N 180 HIS HB3 H N N 181 HIS HD1 H N N 182 HIS HD2 H N N 183 HIS HE1 H N N 184 HIS HE2 H N N 185 HIS HXT H N N 186 HOH O O N N 187 HOH H1 H N N 188 HOH H2 H N N 189 ILE N N N N 190 ILE CA C N S 191 ILE C C N N 192 ILE O O N N 193 ILE CB C N S 194 ILE CG1 C N N 195 ILE CG2 C N N 196 ILE CD1 C N N 197 ILE OXT O N N 198 ILE H H N N 199 ILE H2 H N N 200 ILE HA H N N 201 ILE HB H N N 202 ILE HG12 H N N 203 ILE HG13 H N N 204 ILE HG21 H N N 205 ILE HG22 H N N 206 ILE HG23 H N N 207 ILE HD11 H N N 208 ILE HD12 H N N 209 ILE HD13 H N N 210 ILE HXT H N N 211 LEU N N N N 212 LEU CA C N S 213 LEU C C N N 214 LEU O O N N 215 LEU CB C N N 216 LEU CG C N N 217 LEU CD1 C N N 218 LEU CD2 C N N 219 LEU OXT O N N 220 LEU H H N N 221 LEU H2 H N N 222 LEU HA H N N 223 LEU HB2 H N N 224 LEU HB3 H N N 225 LEU HG H N N 226 LEU HD11 H N N 227 LEU HD12 H N N 228 LEU HD13 H N N 229 LEU HD21 H N N 230 LEU HD22 H N N 231 LEU HD23 H N N 232 LEU HXT H N N 233 LYS N N N N 234 LYS CA C N S 235 LYS C C N N 236 LYS O O N N 237 LYS CB C N N 238 LYS CG C N N 239 LYS CD C N N 240 LYS CE C N N 241 LYS NZ N N N 242 LYS OXT O N N 243 LYS H H N N 244 LYS H2 H N N 245 LYS HA H N N 246 LYS HB2 H N N 247 LYS HB3 H N N 248 LYS HG2 H N N 249 LYS HG3 H N N 250 LYS HD2 H N N 251 LYS HD3 H N N 252 LYS HE2 H N N 253 LYS HE3 H N N 254 LYS HZ1 H N N 255 LYS HZ2 H N N 256 LYS HZ3 H N N 257 LYS HXT H N N 258 MET N N N N 259 MET CA C N S 260 MET C C N N 261 MET O O N N 262 MET CB C N N 263 MET CG C N N 264 MET SD S N N 265 MET CE C N N 266 MET OXT O N N 267 MET H H N N 268 MET H2 H N N 269 MET HA H N N 270 MET HB2 H N N 271 MET HB3 H N N 272 MET HG2 H N N 273 MET HG3 H N N 274 MET HE1 H N N 275 MET HE2 H N N 276 MET HE3 H N N 277 MET HXT H N N 278 PHE N N N N 279 PHE CA C N S 280 PHE C C N N 281 PHE O O N N 282 PHE CB C N N 283 PHE CG C Y N 284 PHE CD1 C Y N 285 PHE CD2 C Y N 286 PHE CE1 C Y N 287 PHE CE2 C Y N 288 PHE CZ C Y N 289 PHE OXT O N N 290 PHE H H N N 291 PHE H2 H N N 292 PHE HA H N N 293 PHE HB2 H N N 294 PHE HB3 H N N 295 PHE HD1 H N N 296 PHE HD2 H N N 297 PHE HE1 H N N 298 PHE HE2 H N N 299 PHE HZ H N N 300 PHE HXT H N N 301 PRO N N N N 302 PRO CA C N S 303 PRO C C N N 304 PRO O O N N 305 PRO CB C N N 306 PRO CG C N N 307 PRO CD C N N 308 PRO OXT O N N 309 PRO H H N N 310 PRO HA H N N 311 PRO HB2 H N N 312 PRO HB3 H N N 313 PRO HG2 H N N 314 PRO HG3 H N N 315 PRO HD2 H N N 316 PRO HD3 H N N 317 PRO HXT H N N 318 SER N N N N 319 SER CA C N S 320 SER C C N N 321 SER O O N N 322 SER CB C N N 323 SER OG O N N 324 SER OXT O N N 325 SER H H N N 326 SER H2 H N N 327 SER HA H N N 328 SER HB2 H N N 329 SER HB3 H N N 330 SER HG H N N 331 SER HXT H N N 332 THR N N N N 333 THR CA C N S 334 THR C C N N 335 THR O O N N 336 THR CB C N R 337 THR OG1 O N N 338 THR CG2 C N N 339 THR OXT O N N 340 THR H H N N 341 THR H2 H N N 342 THR HA H N N 343 THR HB H N N 344 THR HG1 H N N 345 THR HG21 H N N 346 THR HG22 H N N 347 THR HG23 H N N 348 THR HXT H N N 349 TRP N N N N 350 TRP CA C N S 351 TRP C C N N 352 TRP O O N N 353 TRP CB C N N 354 TRP CG C Y N 355 TRP CD1 C Y N 356 TRP CD2 C Y N 357 TRP NE1 N Y N 358 TRP CE2 C Y N 359 TRP CE3 C Y N 360 TRP CZ2 C Y N 361 TRP CZ3 C Y N 362 TRP CH2 C Y N 363 TRP OXT O N N 364 TRP H H N N 365 TRP H2 H N N 366 TRP HA H N N 367 TRP HB2 H N N 368 TRP HB3 H N N 369 TRP HD1 H N N 370 TRP HE1 H N N 371 TRP HE3 H N N 372 TRP HZ2 H N N 373 TRP HZ3 H N N 374 TRP HH2 H N N 375 TRP HXT H N N 376 TYR N N N N 377 TYR CA C N S 378 TYR C C N N 379 TYR O O N N 380 TYR CB C N N 381 TYR CG C Y N 382 TYR CD1 C Y N 383 TYR CD2 C Y N 384 TYR CE1 C Y N 385 TYR CE2 C Y N 386 TYR CZ C Y N 387 TYR OH O N N 388 TYR OXT O N N 389 TYR H H N N 390 TYR H2 H N N 391 TYR HA H N N 392 TYR HB2 H N N 393 TYR HB3 H N N 394 TYR HD1 H N N 395 TYR HD2 H N N 396 TYR HE1 H N N 397 TYR HE2 H N N 398 TYR HH H N N 399 TYR HXT H N N 400 VAL N N N N 401 VAL CA C N S 402 VAL C C N N 403 VAL O O N N 404 VAL CB C N N 405 VAL CG1 C N N 406 VAL CG2 C N N 407 VAL OXT O N N 408 VAL H H N N 409 VAL H2 H N N 410 VAL HA H N N 411 VAL HB H N N 412 VAL HG11 H N N 413 VAL HG12 H N N 414 VAL HG13 H N N 415 VAL HG21 H N N 416 VAL HG22 H N N 417 VAL HG23 H N N 418 VAL HXT H N N 419 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5AE N4 C4 sing N N 1 5AE N3 C4 doub N N 2 5AE N3 C2 sing N N 3 5AE O2 C2 doub N N 4 5AE C4 N5 sing N N 5 5AE C2 N1 sing N N 6 5AE N5 C6 doub N N 7 5AE N1 C6 sing N N 8 5AE N1 "C1'" sing N N 9 5AE "O4'" "C1'" sing N N 10 5AE "O4'" "C4'" sing N N 11 5AE "C1'" "C2'" sing N N 12 5AE "C4'" "C5'" sing N N 13 5AE "C4'" "C3'" sing N N 14 5AE "C5'" "O5'" sing N N 15 5AE "C2'" "O2'" sing N N 16 5AE "C2'" "C3'" sing N N 17 5AE "C3'" "O3'" sing N N 18 5AE N4 H1 sing N N 19 5AE N4 H2 sing N N 20 5AE C6 H3 sing N N 21 5AE "C1'" H4 sing N N 22 5AE "C4'" H5 sing N N 23 5AE "C5'" H6 sing N N 24 5AE "C5'" H7 sing N N 25 5AE "O5'" H8 sing N N 26 5AE "C3'" H9 sing N N 27 5AE "O3'" H10 sing N N 28 5AE "C2'" H11 sing N N 29 5AE "O2'" H12 sing N N 30 ALA N CA sing N N 31 ALA N H sing N N 32 ALA N H2 sing N N 33 ALA CA C sing N N 34 ALA CA CB sing N N 35 ALA CA HA sing N N 36 ALA C O doub N N 37 ALA C OXT sing N N 38 ALA CB HB1 sing N N 39 ALA CB HB2 sing N N 40 ALA CB HB3 sing N N 41 ALA OXT HXT sing N N 42 ARG N CA sing N N 43 ARG N H sing N N 44 ARG N H2 sing N N 45 ARG CA C sing N N 46 ARG CA CB sing N N 47 ARG CA HA sing N N 48 ARG C O doub N N 49 ARG C OXT sing N N 50 ARG CB CG sing N N 51 ARG CB HB2 sing N N 52 ARG CB HB3 sing N N 53 ARG CG CD sing N N 54 ARG CG HG2 sing N N 55 ARG CG HG3 sing N N 56 ARG CD NE sing N N 57 ARG CD HD2 sing N N 58 ARG CD HD3 sing N N 59 ARG NE CZ sing N N 60 ARG NE HE sing N N 61 ARG CZ NH1 sing N N 62 ARG CZ NH2 doub N N 63 ARG NH1 HH11 sing N N 64 ARG NH1 HH12 sing N N 65 ARG NH2 HH21 sing N N 66 ARG NH2 HH22 sing N N 67 ARG OXT HXT sing N N 68 ASN N CA sing N N 69 ASN N H sing N N 70 ASN N H2 sing N N 71 ASN CA C sing N N 72 ASN CA CB sing N N 73 ASN CA HA sing N N 74 ASN C O doub N N 75 ASN C OXT sing N N 76 ASN CB CG sing N N 77 ASN CB HB2 sing N N 78 ASN CB HB3 sing N N 79 ASN CG OD1 doub N N 80 ASN CG ND2 sing N N 81 ASN ND2 HD21 sing N N 82 ASN ND2 HD22 sing N N 83 ASN OXT HXT sing N N 84 ASP N CA sing N N 85 ASP N H sing N N 86 ASP N H2 sing N N 87 ASP CA C sing N N 88 ASP CA CB sing N N 89 ASP CA HA sing N N 90 ASP C O doub N N 91 ASP C OXT sing N N 92 ASP CB CG sing N N 93 ASP CB HB2 sing N N 94 ASP CB HB3 sing N N 95 ASP CG OD1 doub N N 96 ASP CG OD2 sing N N 97 ASP OD2 HD2 sing N N 98 ASP OXT HXT sing N N 99 GLN N CA sing N N 100 GLN N H sing N N 101 GLN N H2 sing N N 102 GLN CA C sing N N 103 GLN CA CB sing N N 104 GLN CA HA sing N N 105 GLN C O doub N N 106 GLN C OXT sing N N 107 GLN CB CG sing N N 108 GLN CB HB2 sing N N 109 GLN CB HB3 sing N N 110 GLN CG CD sing N N 111 GLN CG HG2 sing N N 112 GLN CG HG3 sing N N 113 GLN CD OE1 doub N N 114 GLN CD NE2 sing N N 115 GLN NE2 HE21 sing N N 116 GLN NE2 HE22 sing N N 117 GLN OXT HXT sing N N 118 GLU N CA sing N N 119 GLU N H sing N N 120 GLU N H2 sing N N 121 GLU CA C sing N N 122 GLU CA CB sing N N 123 GLU CA HA sing N N 124 GLU C O doub N N 125 GLU C OXT sing N N 126 GLU CB CG sing N N 127 GLU CB HB2 sing N N 128 GLU CB HB3 sing N N 129 GLU CG CD sing N N 130 GLU CG HG2 sing N N 131 GLU CG HG3 sing N N 132 GLU CD OE1 doub N N 133 GLU CD OE2 sing N N 134 GLU OE2 HE2 sing N N 135 GLU OXT HXT sing N N 136 GLY N CA sing N N 137 GLY N H sing N N 138 GLY N H2 sing N N 139 GLY CA C sing N N 140 GLY CA HA2 sing N N 141 GLY CA HA3 sing N N 142 GLY C O doub N N 143 GLY C OXT sing N N 144 GLY OXT HXT sing N N 145 GOL C1 O1 sing N N 146 GOL C1 C2 sing N N 147 GOL C1 H11 sing N N 148 GOL C1 H12 sing N N 149 GOL O1 HO1 sing N N 150 GOL C2 O2 sing N N 151 GOL C2 C3 sing N N 152 GOL C2 H2 sing N N 153 GOL O2 HO2 sing N N 154 GOL C3 O3 sing N N 155 GOL C3 H31 sing N N 156 GOL C3 H32 sing N N 157 GOL O3 HO3 sing N N 158 HIS N CA sing N N 159 HIS N H sing N N 160 HIS N H2 sing N N 161 HIS CA C sing N N 162 HIS CA CB sing N N 163 HIS CA HA sing N N 164 HIS C O doub N N 165 HIS C OXT sing N N 166 HIS CB CG sing N N 167 HIS CB HB2 sing N N 168 HIS CB HB3 sing N N 169 HIS CG ND1 sing Y N 170 HIS CG CD2 doub Y N 171 HIS ND1 CE1 doub Y N 172 HIS ND1 HD1 sing N N 173 HIS CD2 NE2 sing Y N 174 HIS CD2 HD2 sing N N 175 HIS CE1 NE2 sing Y N 176 HIS CE1 HE1 sing N N 177 HIS NE2 HE2 sing N N 178 HIS OXT HXT sing N N 179 HOH O H1 sing N N 180 HOH O H2 sing N N 181 ILE N CA sing N N 182 ILE N H sing N N 183 ILE N H2 sing N N 184 ILE CA C sing N N 185 ILE CA CB sing N N 186 ILE CA HA sing N N 187 ILE C O doub N N 188 ILE C OXT sing N N 189 ILE CB CG1 sing N N 190 ILE CB CG2 sing N N 191 ILE CB HB sing N N 192 ILE CG1 CD1 sing N N 193 ILE CG1 HG12 sing N N 194 ILE CG1 HG13 sing N N 195 ILE CG2 HG21 sing N N 196 ILE CG2 HG22 sing N N 197 ILE CG2 HG23 sing N N 198 ILE CD1 HD11 sing N N 199 ILE CD1 HD12 sing N N 200 ILE CD1 HD13 sing N N 201 ILE OXT HXT sing N N 202 LEU N CA sing N N 203 LEU N H sing N N 204 LEU N H2 sing N N 205 LEU CA C sing N N 206 LEU CA CB sing N N 207 LEU CA HA sing N N 208 LEU C O doub N N 209 LEU C OXT sing N N 210 LEU CB CG sing N N 211 LEU CB HB2 sing N N 212 LEU CB HB3 sing N N 213 LEU CG CD1 sing N N 214 LEU CG CD2 sing N N 215 LEU CG HG sing N N 216 LEU CD1 HD11 sing N N 217 LEU CD1 HD12 sing N N 218 LEU CD1 HD13 sing N N 219 LEU CD2 HD21 sing N N 220 LEU CD2 HD22 sing N N 221 LEU CD2 HD23 sing N N 222 LEU OXT HXT sing N N 223 LYS N CA sing N N 224 LYS N H sing N N 225 LYS N H2 sing N N 226 LYS CA C sing N N 227 LYS CA CB sing N N 228 LYS CA HA sing N N 229 LYS C O doub N N 230 LYS C OXT sing N N 231 LYS CB CG sing N N 232 LYS CB HB2 sing N N 233 LYS CB HB3 sing N N 234 LYS CG CD sing N N 235 LYS CG HG2 sing N N 236 LYS CG HG3 sing N N 237 LYS CD CE sing N N 238 LYS CD HD2 sing N N 239 LYS CD HD3 sing N N 240 LYS CE NZ sing N N 241 LYS CE HE2 sing N N 242 LYS CE HE3 sing N N 243 LYS NZ HZ1 sing N N 244 LYS NZ HZ2 sing N N 245 LYS NZ HZ3 sing N N 246 LYS OXT HXT sing N N 247 MET N CA sing N N 248 MET N H sing N N 249 MET N H2 sing N N 250 MET CA C sing N N 251 MET CA CB sing N N 252 MET CA HA sing N N 253 MET C O doub N N 254 MET C OXT sing N N 255 MET CB CG sing N N 256 MET CB HB2 sing N N 257 MET CB HB3 sing N N 258 MET CG SD sing N N 259 MET CG HG2 sing N N 260 MET CG HG3 sing N N 261 MET SD CE sing N N 262 MET CE HE1 sing N N 263 MET CE HE2 sing N N 264 MET CE HE3 sing N N 265 MET OXT HXT sing N N 266 PHE N CA sing N N 267 PHE N H sing N N 268 PHE N H2 sing N N 269 PHE CA C sing N N 270 PHE CA CB sing N N 271 PHE CA HA sing N N 272 PHE C O doub N N 273 PHE C OXT sing N N 274 PHE CB CG sing N N 275 PHE CB HB2 sing N N 276 PHE CB HB3 sing N N 277 PHE CG CD1 doub Y N 278 PHE CG CD2 sing Y N 279 PHE CD1 CE1 sing Y N 280 PHE CD1 HD1 sing N N 281 PHE CD2 CE2 doub Y N 282 PHE CD2 HD2 sing N N 283 PHE CE1 CZ doub Y N 284 PHE CE1 HE1 sing N N 285 PHE CE2 CZ sing Y N 286 PHE CE2 HE2 sing N N 287 PHE CZ HZ sing N N 288 PHE OXT HXT sing N N 289 PRO N CA sing N N 290 PRO N CD sing N N 291 PRO N H sing N N 292 PRO CA C sing N N 293 PRO CA CB sing N N 294 PRO CA HA sing N N 295 PRO C O doub N N 296 PRO C OXT sing N N 297 PRO CB CG sing N N 298 PRO CB HB2 sing N N 299 PRO CB HB3 sing N N 300 PRO CG CD sing N N 301 PRO CG HG2 sing N N 302 PRO CG HG3 sing N N 303 PRO CD HD2 sing N N 304 PRO CD HD3 sing N N 305 PRO OXT HXT sing N N 306 SER N CA sing N N 307 SER N H sing N N 308 SER N H2 sing N N 309 SER CA C sing N N 310 SER CA CB sing N N 311 SER CA HA sing N N 312 SER C O doub N N 313 SER C OXT sing N N 314 SER CB OG sing N N 315 SER CB HB2 sing N N 316 SER CB HB3 sing N N 317 SER OG HG sing N N 318 SER OXT HXT sing N N 319 THR N CA sing N N 320 THR N H sing N N 321 THR N H2 sing N N 322 THR CA C sing N N 323 THR CA CB sing N N 324 THR CA HA sing N N 325 THR C O doub N N 326 THR C OXT sing N N 327 THR CB OG1 sing N N 328 THR CB CG2 sing N N 329 THR CB HB sing N N 330 THR OG1 HG1 sing N N 331 THR CG2 HG21 sing N N 332 THR CG2 HG22 sing N N 333 THR CG2 HG23 sing N N 334 THR OXT HXT sing N N 335 TRP N CA sing N N 336 TRP N H sing N N 337 TRP N H2 sing N N 338 TRP CA C sing N N 339 TRP CA CB sing N N 340 TRP CA HA sing N N 341 TRP C O doub N N 342 TRP C OXT sing N N 343 TRP CB CG sing N N 344 TRP CB HB2 sing N N 345 TRP CB HB3 sing N N 346 TRP CG CD1 doub Y N 347 TRP CG CD2 sing Y N 348 TRP CD1 NE1 sing Y N 349 TRP CD1 HD1 sing N N 350 TRP CD2 CE2 doub Y N 351 TRP CD2 CE3 sing Y N 352 TRP NE1 CE2 sing Y N 353 TRP NE1 HE1 sing N N 354 TRP CE2 CZ2 sing Y N 355 TRP CE3 CZ3 doub Y N 356 TRP CE3 HE3 sing N N 357 TRP CZ2 CH2 doub Y N 358 TRP CZ2 HZ2 sing N N 359 TRP CZ3 CH2 sing Y N 360 TRP CZ3 HZ3 sing N N 361 TRP CH2 HH2 sing N N 362 TRP OXT HXT sing N N 363 TYR N CA sing N N 364 TYR N H sing N N 365 TYR N H2 sing N N 366 TYR CA C sing N N 367 TYR CA CB sing N N 368 TYR CA HA sing N N 369 TYR C O doub N N 370 TYR C OXT sing N N 371 TYR CB CG sing N N 372 TYR CB HB2 sing N N 373 TYR CB HB3 sing N N 374 TYR CG CD1 doub Y N 375 TYR CG CD2 sing Y N 376 TYR CD1 CE1 sing Y N 377 TYR CD1 HD1 sing N N 378 TYR CD2 CE2 doub Y N 379 TYR CD2 HD2 sing N N 380 TYR CE1 CZ doub Y N 381 TYR CE1 HE1 sing N N 382 TYR CE2 CZ sing Y N 383 TYR CE2 HE2 sing N N 384 TYR CZ OH sing N N 385 TYR OH HH sing N N 386 TYR OXT HXT sing N N 387 VAL N CA sing N N 388 VAL N H sing N N 389 VAL N H2 sing N N 390 VAL CA C sing N N 391 VAL CA CB sing N N 392 VAL CA HA sing N N 393 VAL C O doub N N 394 VAL C OXT sing N N 395 VAL CB CG1 sing N N 396 VAL CB CG2 sing N N 397 VAL CB HB sing N N 398 VAL CG1 HG11 sing N N 399 VAL CG1 HG12 sing N N 400 VAL CG1 HG13 sing N N 401 VAL CG2 HG21 sing N N 402 VAL CG2 HG22 sing N N 403 VAL CG2 HG23 sing N N 404 VAL OXT HXT sing N N 405 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '4-amino-1-(beta-D-ribofuranosyl)-1,3,5-triazin-2(1H)-one' 5AE 3 GLYCEROL GOL 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4JC4 _pdbx_initial_refinement_model.details ? #