HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 13-MAY-14 4QDD TITLE CRYSTAL STRUCTURE OF 3-KETOSTEROID-9-ALPHA-HYDROXYLASE 5 (KSHA5) FROM TITLE 2 R. RHODOCHROUS IN COMPLEX WITH 1,4-30Q-COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-KETOSTEROID 9ALPHA-HYDROXYLASE OXYGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS RHODOCHROUS; SOURCE 3 ORGANISM_TAXID: 1829; SOURCE 4 GENE: KSHA5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: GJ1158; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS MIXED FUNCTION OXYGENASES, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.PENFIELD,L.J.WORRALL,N.C.STRYNADKA,L.D.ELTIS REVDAT 4 28-FEB-24 4QDD 1 REMARK LINK REVDAT 3 22-NOV-17 4QDD 1 REMARK REVDAT 2 01-OCT-14 4QDD 1 JRNL REVDAT 1 30-JUL-14 4QDD 0 JRNL AUTH J.S.PENFIELD,L.J.WORRALL,N.C.STRYNADKA,L.D.ELTIS JRNL TITL SUBSTRATE SPECIFICITIES AND CONFORMATIONAL FLEXIBILITY OF JRNL TITL 2 3-KETOSTEROID 9 ALPHA-HYDROXYLASES. JRNL REF J.BIOL.CHEM. V. 289 25523 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 25049233 JRNL DOI 10.1074/JBC.M114.575886 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1117 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1566 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2959 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 18.07000 REMARK 3 B22 (A**2) : 18.07000 REMARK 3 B33 (A**2) : -36.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.895 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.871 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3082 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2786 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4193 ; 0.966 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6412 ; 3.643 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 364 ; 6.173 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;32.756 ;24.136 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 482 ;15.095 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ; 9.996 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 431 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3521 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 752 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1462 ; 2.629 ; 5.156 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1461 ; 2.617 ; 5.153 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1824 ; 3.990 ; 7.723 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.662 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.338 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4QDD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000085912. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22485 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 141.309 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.24400 REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.01300 REMARK 200 R SYM FOR SHELL (I) : 1.27800 REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M NAH2PO4, 0.125 M K2HPO4, 4% PEG REMARK 280 -1000, 20 MM TRIS, 0.1 MM PHOSPHATE-CITRATE, PH 4.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.57000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 23.57000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.57000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -150.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -81.58500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 141.30937 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -163.17000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ILE A 3 REMARK 465 ASP A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 ARG A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 ASP A 11 REMARK 465 ASP A 12 REMARK 465 ASP A 13 REMARK 465 VAL A 14 REMARK 465 GLY A 223 REMARK 465 THR A 224 REMARK 465 ASN A 225 REMARK 465 GLU A 384 REMARK 465 GLY A 385 REMARK 465 SER A 386 REMARK 465 THR A 387 REMARK 465 ALA A 388 REMARK 465 THR A 389 REMARK 465 PRO A 390 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 43 18.05 -143.13 REMARK 500 ASP A 137 103.07 -163.74 REMARK 500 PRO A 144 -167.72 -62.11 REMARK 500 THR A 148 -160.47 -164.29 REMARK 500 ALA A 153 -66.25 -17.93 REMARK 500 ILE A 191 -68.41 -95.00 REMARK 500 HIS A 206 -5.26 81.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 240 GLY A 241 -146.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 73 SG REMARK 620 2 FES A 401 S1 97.4 REMARK 620 3 FES A 401 S2 122.2 89.5 REMARK 620 4 CYS A 92 SG 124.0 107.9 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 75 ND1 REMARK 620 2 FES A 401 S1 143.5 REMARK 620 3 FES A 401 S2 109.9 90.1 REMARK 620 4 HIS A 95 ND1 97.3 113.9 88.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 187 NE2 REMARK 620 2 HIS A 192 NE2 110.5 REMARK 620 3 ASP A 311 OD2 154.0 87.8 REMARK 620 4 HOH A 501 O 74.1 118.0 114.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 30Q A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QDC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 3-KETOSTEROID-9-ALPHA-HYDROXYLASE 5 (KSHA5) REMARK 900 FROM R. RHODOCHROUS IN COMPLEX WITH ADD REMARK 900 RELATED ID: 4QDF RELATED DB: PDB REMARK 900 RELATED ID: 4QCK RELATED DB: PDB DBREF 4QDD A 1 390 UNP F1CMY8 F1CMY8_RHORH 1 390 SEQRES 1 A 390 MET SER ILE ASP THR ALA ARG SER GLY SER ASP ASP ASP SEQRES 2 A 390 VAL GLU ILE ARG GLU ILE GLN ALA ALA ALA ALA PRO THR SEQRES 3 A 390 ARG PHE ALA ARG GLY TRP HIS CYS LEU GLY LEU LEU ARG SEQRES 4 A 390 ASP PHE GLN ASP GLY LYS PRO HIS SER ILE GLU ALA PHE SEQRES 5 A 390 GLY THR LYS LEU VAL VAL PHE ALA ASP SER LYS GLY GLN SEQRES 6 A 390 LEU ASN VAL LEU ASP ALA TYR CYS ARG HIS MET GLY GLY SEQRES 7 A 390 ASP LEU SER ARG GLY GLU VAL LYS GLY ASP SER ILE ALA SEQRES 8 A 390 CYS PRO PHE HIS ASP TRP ARG TRP ASN GLY LYS GLY LYS SEQRES 9 A 390 CYS THR ASP ILE PRO TYR ALA ARG ARG VAL PRO PRO ILE SEQRES 10 A 390 ALA LYS THR ARG ALA TRP THR THR LEU GLU ARG ASN GLY SEQRES 11 A 390 GLN LEU TYR VAL TRP ASN ASP PRO GLN GLY ASN PRO PRO SEQRES 12 A 390 PRO GLU ASP VAL THR ILE PRO GLU ILE ALA GLY TYR GLY SEQRES 13 A 390 THR ASP GLU TRP THR ASP TRP SER TRP LYS SER LEU ARG SEQRES 14 A 390 ILE LYS GLY SER HIS CYS ARG GLU ILE VAL ASP ASN VAL SEQRES 15 A 390 VAL ASP MET ALA HIS PHE PHE TYR ILE HIS TYR SER PHE SEQRES 16 A 390 PRO ARG TYR PHE LYS ASN VAL PHE GLU GLY HIS THR ALA SEQRES 17 A 390 THR GLN TYR MET HIS SER THR GLY ARG GLU ASP VAL ILE SEQRES 18 A 390 SER GLY THR ASN TYR ASP ASP PRO ASN ALA GLU LEU ARG SEQRES 19 A 390 SER GLU ALA THR TYR PHE GLY PRO SER TYR MET ILE ASP SEQRES 20 A 390 TRP LEU GLU SER ASP ALA ASN GLY GLN THR ILE GLU THR SEQRES 21 A 390 ILE LEU ILE ASN CYS HIS TYR PRO VAL SER ASN ASN GLU SEQRES 22 A 390 PHE VAL LEU GLN TYR GLY ALA ILE VAL LYS LYS LEU PRO SEQRES 23 A 390 GLY VAL SER ASP GLU ILE ALA ALA GLY MET ALA GLU GLN SEQRES 24 A 390 PHE ALA GLU GLY VAL GLN LEU GLY PHE GLU GLN ASP VAL SEQRES 25 A 390 GLU ILE TRP LYS ASN LYS ALA PRO ILE ASP ASN PRO LEU SEQRES 26 A 390 LEU SER GLU GLU ASP GLY PRO VAL TYR GLN LEU ARG ARG SEQRES 27 A 390 TRP TYR GLN GLN PHE TYR VAL ASP VAL GLU ASP ILE THR SEQRES 28 A 390 GLU ASP MET THR LYS ARG PHE GLU PHE GLU ILE ASP THR SEQRES 29 A 390 THR ARG ALA VAL ALA SER TRP GLN LYS GLU VAL ALA GLU SEQRES 30 A 390 ASN LEU ALA LYS GLN ALA GLU GLY SER THR ALA THR PRO HET FES A 401 4 HET FE2 A 402 1 HET 30Q A 403 32 HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM FE2 FE (II) ION HETNAM 30Q S-[2-(PROPANOYLAMINO)ETHYL] (2S)-2-[(8S,9S,10R,13S,14S, HETNAM 2 30Q 17R)-10,13-DIMETHYL-3-OXO-6,7,8,9,10,11,12,13,14,15, HETNAM 3 30Q 16,17-DODECAHYDRO-3H-CYCLOPENTA[A]PHENANTHREN-17- HETNAM 4 30Q YL]PROPANETHIOATE (NON-PREFERRED NAME) FORMUL 2 FES FE2 S2 FORMUL 3 FE2 FE 2+ FORMUL 4 30Q C27 H39 N O3 S FORMUL 5 HOH *23(H2 O) HELIX 1 1 LEU A 38 GLN A 42 1 5 HELIX 2 2 ASP A 79 GLY A 83 5 5 HELIX 3 3 CYS A 175 ASP A 180 1 6 HELIX 4 4 ASN A 181 MET A 185 5 5 HELIX 5 5 ALA A 186 ILE A 191 1 6 HELIX 6 6 SER A 289 LYS A 318 1 30 HELIX 7 7 PRO A 332 GLN A 342 1 11 HELIX 8 8 PHE A 343 VAL A 345 5 3 HELIX 9 9 ASP A 346 ILE A 350 5 5 HELIX 10 10 THR A 351 LYS A 356 1 6 HELIX 11 11 THR A 364 LYS A 381 1 18 SHEET 1 A 3 GLY A 31 LEU A 37 0 SHEET 2 A 3 GLN A 131 ASN A 136 -1 O VAL A 134 N HIS A 33 SHEET 3 A 3 THR A 125 ARG A 128 -1 N LEU A 126 O TYR A 133 SHEET 1 B 3 HIS A 47 ALA A 51 0 SHEET 2 B 3 THR A 54 ALA A 60 -1 O LEU A 56 N ILE A 49 SHEET 3 B 3 LEU A 66 ASP A 70 -1 O ASN A 67 N PHE A 59 SHEET 1 C 4 GLU A 84 LYS A 86 0 SHEET 2 C 4 SER A 89 ALA A 91 -1 O ALA A 91 N GLU A 84 SHEET 3 C 4 ARG A 98 ASN A 100 -1 O TRP A 99 N ILE A 90 SHEET 4 C 4 CYS A 105 ASP A 107 -1 O ASP A 107 N ARG A 98 SHEET 1 D 8 LYS A 166 LYS A 171 0 SHEET 2 D 8 GLU A 273 VAL A 282 -1 O LEU A 276 N LEU A 168 SHEET 3 D 8 THR A 257 SER A 270 -1 N CYS A 265 O GLN A 277 SHEET 4 D 8 TYR A 244 ASP A 252 -1 N LEU A 249 O THR A 260 SHEET 5 D 8 GLU A 232 PHE A 240 -1 N ARG A 234 O GLU A 250 SHEET 6 D 8 THR A 207 GLY A 216 -1 N GLN A 210 O ALA A 237 SHEET 7 D 8 SER A 194 GLU A 204 -1 N VAL A 202 O THR A 209 SHEET 8 D 8 PHE A 358 GLU A 361 -1 O PHE A 358 N PHE A 203 LINK SG CYS A 73 FE2 FES A 401 1555 1555 2.23 LINK ND1 HIS A 75 FE1 FES A 401 1555 1555 2.27 LINK SG CYS A 92 FE2 FES A 401 1555 1555 2.13 LINK ND1 HIS A 95 FE1 FES A 401 1555 1555 2.26 LINK NE2 HIS A 187 FE FE2 A 402 1555 1555 2.50 LINK NE2 HIS A 192 FE FE2 A 402 1555 1555 2.57 LINK OD2 ASP A 311 FE FE2 A 402 1555 1555 2.30 LINK FE FE2 A 402 O HOH A 501 1555 1555 1.88 CISPEP 1 GLY A 241 PRO A 242 0 5.44 CISPEP 2 GLN A 382 ALA A 383 0 -1.66 SITE 1 AC1 8 CYS A 73 HIS A 75 MET A 76 GLY A 78 SITE 2 AC1 8 CYS A 92 PHE A 94 HIS A 95 TRP A 97 SITE 1 AC2 4 HIS A 187 HIS A 192 ASP A 311 HOH A 501 SITE 1 AC3 8 ASN A 181 VAL A 182 HIS A 192 GLN A 210 SITE 2 AC3 8 SER A 235 ASP A 247 GLN A 299 PHE A 300 CRYST1 163.170 163.170 47.140 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006129 0.003538 0.000000 0.00000 SCALE2 0.000000 0.007077 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021213 0.00000