HEADER CELL ADHESION 13-MAY-14 4QDG TITLE CRYSTAL STRUCTURE OF A PUTATIVE ADHESIN (BT2657) FROM BACTEROIDES TITLE 2 THETAIOTAOMICRON VPI-5482 AT 2.20 A RESOLUTION (PSI COMMUNITY TARGET, TITLE 3 NAKAYAMA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ADHESIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 30-338; COMPND 5 SYNONYM: PUTATIVE LIPOPROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482; SOURCE 5 GENE: BT_2657; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PF08842 FAMILY, FIMBRILLIN-A ASSOCIATED ANCHOR PROTEINS MFA1 AND KEYWDS 2 MFA2, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 4QDG 1 REMARK SEQADV LINK REVDAT 3 22-APR-20 4QDG 1 JRNL LINK REVDAT 2 11-OCT-17 4QDG 1 REMARK REVDAT 1 11-JUN-14 4QDG 0 JRNL AUTH Q.XU,M.SHOJI,S.SHIBATA,M.NAITO,K.SATO,M.A.ELSLIGER, JRNL AUTH 2 J.C.GRANT,H.L.AXELROD,H.J.CHIU,C.L.FARR,L.JAROSZEWSKI, JRNL AUTH 3 M.W.KNUTH,A.M.DEACON,A.GODZIK,S.A.LESLEY,M.A.CURTIS, JRNL AUTH 4 K.NAKAYAMA,I.A.WILSON JRNL TITL A DISTINCT TYPE OF PILUS FROM THE HUMAN MICROBIOME. JRNL REF CELL V. 165 690 2016 JRNL REFN ISSN 1097-4172 JRNL PMID 27062925 JRNL DOI 10.1016/J.CELL.2016.03.016 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 32050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1596 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.27 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.36 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2800 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2152 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2680 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE : 0.2417 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.29 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 120 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4857 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.30790 REMARK 3 B22 (A**2) : 0.63250 REMARK 3 B33 (A**2) : 2.67540 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.88450 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.278 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5045 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6855 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2359 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 150 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 728 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5045 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 644 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5834 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.73 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.92 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|35 - 334} REMARK 3 ORIGIN FOR THE GROUP (A): 21.6002 10.5156 26.4292 REMARK 3 T TENSOR REMARK 3 T11: -0.0406 T22: -0.0546 REMARK 3 T33: -0.0947 T12: 0.0002 REMARK 3 T13: 0.0284 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 1.4973 L22: 1.1819 REMARK 3 L33: 0.5721 L12: -0.8738 REMARK 3 L13: -0.0899 L23: 0.2055 REMARK 3 S TENSOR REMARK 3 S11: 0.1459 S12: 0.0011 S13: 0.0521 REMARK 3 S21: -0.1398 S22: -0.0702 S23: -0.0395 REMARK 3 S31: -0.1272 S32: 0.0440 S33: -0.0757 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {B|35 - 336} REMARK 3 ORIGIN FOR THE GROUP (A): 32.0580 28.7394 -5.4861 REMARK 3 T TENSOR REMARK 3 T11: 0.0335 T22: -0.1319 REMARK 3 T33: -0.1519 T12: -0.0299 REMARK 3 T13: -0.0320 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 1.3788 L22: 1.3688 REMARK 3 L33: 1.2521 L12: -0.7141 REMARK 3 L13: -0.3507 L23: 0.6879 REMARK 3 S TENSOR REMARK 3 S11: 0.0338 S12: -0.0331 S13: -0.0758 REMARK 3 S21: 0.1202 S22: -0.0995 S23: 0.0221 REMARK 3 S31: 0.2385 S32: -0.0329 S33: 0.0657 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. THE MAD PHASES WERE USED AS RESTRAINTS DURING REMARK 3 REFINEMENT. 4. NCS RESTRAINTS WERE APPLIED USING BUSTER'S LSSR REMARK 3 RESTRAINT REPRESENTATION (-AUTONCS). 5. MAGNESIUM ION (MG), REMARK 3 ETHYLENE GLYCOL(EDO) MODELED ARE PRESENT IN CRYSTALLIZATION/CRYO REMARK 3 CONDITIONS. REMARK 4 REMARK 4 4QDG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000085915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937,0.95369 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32074 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 42.349 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.73500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.200M MAGNESIUM FORMATE, 20.00% REMARK 280 POLYETHYLENE GLYCOL 3350, NANODROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.16200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLU A 30 REMARK 465 ARG A 31 REMARK 465 ILE A 32 REMARK 465 TYR A 33 REMARK 465 GLU A 34 REMARK 465 ASP A 335 REMARK 465 ILE A 336 REMARK 465 ARG A 337 REMARK 465 GLN A 338 REMARK 465 GLY B 0 REMARK 465 GLU B 30 REMARK 465 ARG B 31 REMARK 465 ILE B 32 REMARK 465 TYR B 33 REMARK 465 GLU B 34 REMARK 465 ARG B 337 REMARK 465 GLN B 338 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 35 CG OD1 OD2 REMARK 470 ASN A 334 CG OD1 ND2 REMARK 470 ASP B 35 CG OD1 OD2 REMARK 470 LYS B 116 CG CD CE NZ REMARK 470 ASN B 334 CG OD1 ND2 REMARK 470 ILE B 336 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 78 -55.52 -124.72 REMARK 500 SER A 117 139.44 -39.85 REMARK 500 TYR A 167 118.75 62.24 REMARK 500 ASN A 206 28.08 -141.32 REMARK 500 THR A 322 -66.63 -122.13 REMARK 500 VAL B 78 -54.49 -125.58 REMARK 500 SER B 117 138.74 -39.26 REMARK 500 TYR B 167 119.01 63.39 REMARK 500 ASN B 206 29.04 -141.71 REMARK 500 ASN B 277 88.95 -155.09 REMARK 500 THR B 322 -66.74 -122.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 64 OD1 REMARK 620 2 ASP A 64 OD2 54.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 179 OD1 REMARK 620 2 LEU A 301 O 118.7 REMARK 620 3 GLU A 304 O 90.4 95.3 REMARK 620 4 HOH A 501 O 86.2 67.4 157.6 REMARK 620 5 HOH A 507 O 94.7 134.0 116.5 85.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 64 OD1 REMARK 620 2 ASP B 64 OD2 51.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 179 OD1 REMARK 620 2 LEU B 301 O 124.0 REMARK 620 3 GLU B 304 O 87.0 94.4 REMARK 620 4 HOH B 501 O 82.1 146.0 109.6 REMARK 620 5 HOH B 505 O 90.2 69.0 157.7 91.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-425067 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (30-338) WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4QDG A 30 338 UNP Q8A4E2 Q8A4E2_BACTN 30 338 DBREF 4QDG B 30 338 UNP Q8A4E2 Q8A4E2_BACTN 30 338 SEQADV 4QDG GLY A 0 UNP Q8A4E2 EXPRESSION TAG SEQADV 4QDG GLY B 0 UNP Q8A4E2 EXPRESSION TAG SEQRES 1 A 310 GLY GLU ARG ILE TYR GLU ASP LEU ALA PRO CYS PRO HIS SEQRES 2 A 310 GLY VAL SER LEU ARG PHE ILE TYR ASP TYR ASN MSE GLU SEQRES 3 A 310 TYR ALA ASN ALA PHE ALA LYS LYS VAL ASP CYS LEU THR SEQRES 4 A 310 LEU LEU VAL TYR ASP GLU ASN GLY ASN TYR VAL ASP THR SEQRES 5 A 310 ARG ILE VAL THR GLY THR GLU LEU GLN ASP GLU ASN TYR SEQRES 6 A 310 ARG MSE LYS LEU ASP LEU LYS GLN GLY ASN TYR HIS PHE SEQRES 7 A 310 VAL ALA TYR GLY GLY LEU ALA CYS ASN LYS SER SER PHE SEQRES 8 A 310 LEU MSE LYS TYR THR PRO GLY GLU GLY THR GLY TYR THR SEQRES 9 A 310 ASP LEU GLN VAL GLU LEU ASP SER GLU CYS LEU THR ASN SEQRES 10 A 310 PRO ARG ARG LYS ASN LEU HIS GLY LEU TYR TRP GLY GLU SEQRES 11 A 310 LEU THR LEU ALA THR ALA ASP LEU TYR SER GLU GLY THR SEQRES 12 A 310 VAL GLU MSE MSE LYS ASN THR ASN ASN ILE ARG VAL VAL SEQRES 13 A 310 LEU GLN GLN MSE ASN GLY GLU PRO VAL ASP ASP LYS LYS SEQRES 14 A 310 PHE GLU PHE GLU ILE THR ASP ASP ASN ILE LEU PHE SER SEQRES 15 A 310 TYR ASP ASN ASN LEU LEU GLU ASN GLY MSE VAL THR TYR SEQRES 16 A 310 THR PRO TRP ALA GLN GLY GLN ALA SER ALA GLY PHE THR SEQRES 17 A 310 ASP GLU GLY ARG GLU VAL VAL VAL ALA TYR ALA GLU LEU SEQRES 18 A 310 SER THR SER ARG LEU MSE VAL ARG ASP TRP TYR SER PRO SEQRES 19 A 310 LYS LEU THR VAL ARG ARG LYS ALA ASP GLY VAL GLU ILE SEQRES 20 A 310 ILE ASN ILE PRO LEU ILE ASN TYR LEU LEU MSE LEU LYS SEQRES 21 A 310 SER ASP LEU TYR ALA SER MSE ASP SER GLN GLU PHE LEU SEQRES 22 A 310 ASP ARG GLU SER GLU TRP SER MSE ILE PHE PHE LEU SER SEQRES 23 A 310 PRO ASN LEU GLU TRP ILE LYS THR TYR ILE LYS ILE ASN SEQRES 24 A 310 ASP TRP THR VAL ARG ILE ASN ASP ILE ARG GLN SEQRES 1 B 310 GLY GLU ARG ILE TYR GLU ASP LEU ALA PRO CYS PRO HIS SEQRES 2 B 310 GLY VAL SER LEU ARG PHE ILE TYR ASP TYR ASN MSE GLU SEQRES 3 B 310 TYR ALA ASN ALA PHE ALA LYS LYS VAL ASP CYS LEU THR SEQRES 4 B 310 LEU LEU VAL TYR ASP GLU ASN GLY ASN TYR VAL ASP THR SEQRES 5 B 310 ARG ILE VAL THR GLY THR GLU LEU GLN ASP GLU ASN TYR SEQRES 6 B 310 ARG MSE LYS LEU ASP LEU LYS GLN GLY ASN TYR HIS PHE SEQRES 7 B 310 VAL ALA TYR GLY GLY LEU ALA CYS ASN LYS SER SER PHE SEQRES 8 B 310 LEU MSE LYS TYR THR PRO GLY GLU GLY THR GLY TYR THR SEQRES 9 B 310 ASP LEU GLN VAL GLU LEU ASP SER GLU CYS LEU THR ASN SEQRES 10 B 310 PRO ARG ARG LYS ASN LEU HIS GLY LEU TYR TRP GLY GLU SEQRES 11 B 310 LEU THR LEU ALA THR ALA ASP LEU TYR SER GLU GLY THR SEQRES 12 B 310 VAL GLU MSE MSE LYS ASN THR ASN ASN ILE ARG VAL VAL SEQRES 13 B 310 LEU GLN GLN MSE ASN GLY GLU PRO VAL ASP ASP LYS LYS SEQRES 14 B 310 PHE GLU PHE GLU ILE THR ASP ASP ASN ILE LEU PHE SER SEQRES 15 B 310 TYR ASP ASN ASN LEU LEU GLU ASN GLY MSE VAL THR TYR SEQRES 16 B 310 THR PRO TRP ALA GLN GLY GLN ALA SER ALA GLY PHE THR SEQRES 17 B 310 ASP GLU GLY ARG GLU VAL VAL VAL ALA TYR ALA GLU LEU SEQRES 18 B 310 SER THR SER ARG LEU MSE VAL ARG ASP TRP TYR SER PRO SEQRES 19 B 310 LYS LEU THR VAL ARG ARG LYS ALA ASP GLY VAL GLU ILE SEQRES 20 B 310 ILE ASN ILE PRO LEU ILE ASN TYR LEU LEU MSE LEU LYS SEQRES 21 B 310 SER ASP LEU TYR ALA SER MSE ASP SER GLN GLU PHE LEU SEQRES 22 B 310 ASP ARG GLU SER GLU TRP SER MSE ILE PHE PHE LEU SER SEQRES 23 B 310 PRO ASN LEU GLU TRP ILE LYS THR TYR ILE LYS ILE ASN SEQRES 24 B 310 ASP TRP THR VAL ARG ILE ASN ASP ILE ARG GLN MODRES 4QDG MSE A 53 MET SELENOMETHIONINE MODRES 4QDG MSE A 95 MET SELENOMETHIONINE MODRES 4QDG MSE A 121 MET SELENOMETHIONINE MODRES 4QDG MSE A 174 MET SELENOMETHIONINE MODRES 4QDG MSE A 175 MET SELENOMETHIONINE MODRES 4QDG MSE A 188 MET SELENOMETHIONINE MODRES 4QDG MSE A 220 MET SELENOMETHIONINE MODRES 4QDG MSE A 255 MET SELENOMETHIONINE MODRES 4QDG MSE A 286 MET SELENOMETHIONINE MODRES 4QDG MSE A 295 MET SELENOMETHIONINE MODRES 4QDG MSE A 309 MET SELENOMETHIONINE MODRES 4QDG MSE B 53 MET SELENOMETHIONINE MODRES 4QDG MSE B 95 MET SELENOMETHIONINE MODRES 4QDG MSE B 121 MET SELENOMETHIONINE MODRES 4QDG MSE B 174 MET SELENOMETHIONINE MODRES 4QDG MSE B 175 MET SELENOMETHIONINE MODRES 4QDG MSE B 188 MET SELENOMETHIONINE MODRES 4QDG MSE B 220 MET SELENOMETHIONINE MODRES 4QDG MSE B 255 MET SELENOMETHIONINE MODRES 4QDG MSE B 286 MET SELENOMETHIONINE MODRES 4QDG MSE B 295 MET SELENOMETHIONINE MODRES 4QDG MSE B 309 MET SELENOMETHIONINE HET MSE A 53 8 HET MSE A 95 8 HET MSE A 121 8 HET MSE A 174 8 HET MSE A 175 8 HET MSE A 188 8 HET MSE A 220 8 HET MSE A 255 8 HET MSE A 286 8 HET MSE A 295 8 HET MSE A 309 8 HET MSE B 53 8 HET MSE B 95 8 HET MSE B 121 8 HET MSE B 174 8 HET MSE B 175 8 HET MSE B 188 8 HET MSE B 220 8 HET MSE B 255 8 HET MSE B 286 8 HET MSE B 295 8 HET MSE B 309 8 HET MG A 401 1 HET MG A 402 1 HET MG B 401 1 HET MG B 402 1 HET EDO B 403 4 HET EDO B 404 4 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 22(C5 H11 N O2 SE) FORMUL 3 MG 4(MG 2+) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 9 HOH *380(H2 O) HELIX 1 1 ALA A 58 VAL A 63 1 6 HELIX 2 2 GLY A 85 ASP A 90 5 6 HELIX 3 3 GLY A 130 LEU A 134 5 5 HELIX 4 4 SER A 140 ASN A 145 1 6 HELIX 5 5 ASP A 194 LYS A 196 5 3 HELIX 6 6 LEU A 280 TYR A 292 1 13 HELIX 7 7 ASP A 296 GLU A 304 1 9 HELIX 8 8 ALA B 58 VAL B 63 1 6 HELIX 9 9 GLY B 85 ASP B 90 5 6 HELIX 10 10 GLY B 130 LEU B 134 5 5 HELIX 11 11 SER B 140 ASN B 145 1 6 HELIX 12 12 ASP B 194 LYS B 196 5 3 HELIX 13 13 LEU B 280 TYR B 292 1 13 HELIX 14 14 ASP B 296 GLU B 304 1 9 SHEET 1 A 3 MSE A 95 ASP A 98 0 SHEET 2 A 3 HIS A 41 ILE A 48 -1 N VAL A 43 O LEU A 97 SHEET 3 A 3 ALA A 164 ASP A 165 -1 O ALA A 164 N GLY A 42 SHEET 1 B 3 MSE A 95 ASP A 98 0 SHEET 2 B 3 HIS A 41 ILE A 48 -1 N VAL A 43 O LEU A 97 SHEET 3 B 3 SER A 168 GLU A 173 1 O VAL A 172 N ARG A 46 SHEET 1 C 5 TYR A 77 VAL A 83 0 SHEET 2 C 5 LEU A 66 ASP A 72 -1 N LEU A 68 O ARG A 81 SHEET 3 C 5 ASN A 103 GLY A 110 -1 O VAL A 107 N LEU A 69 SHEET 4 C 5 TYR A 155 ALA A 162 -1 O LEU A 159 N PHE A 106 SHEET 5 C 5 MSE A 175 LYS A 176 -1 O MSE A 175 N TRP A 156 SHEET 1 D 3 PHE A 119 LYS A 122 0 SHEET 2 D 3 GLN A 135 LEU A 138 -1 O GLN A 135 N LYS A 122 SHEET 3 D 3 LEU A 208 PHE A 209 -1 O PHE A 209 N VAL A 136 SHEET 1 E 6 ALA A 227 PHE A 235 0 SHEET 2 E 6 GLU A 241 THR A 251 -1 O VAL A 242 N GLY A 234 SHEET 3 E 6 ASN A 179 GLN A 187 -1 N VAL A 183 O ALA A 247 SHEET 4 E 6 GLU A 306 LEU A 313 1 O MSE A 309 N VAL A 184 SHEET 5 E 6 TYR A 323 ILE A 326 -1 O LYS A 325 N ILE A 310 SHEET 6 E 6 TRP A 329 ARG A 332 -1 O VAL A 331 N ILE A 324 SHEET 1 F 4 VAL A 221 TYR A 223 0 SHEET 2 F 4 PHE A 198 ASP A 204 -1 N ILE A 202 O TYR A 223 SHEET 3 F 4 LYS A 263 ARG A 268 -1 O THR A 265 N GLU A 201 SHEET 4 F 4 GLU A 274 PRO A 279 -1 O ILE A 276 N VAL A 266 SHEET 1 G 3 MSE B 95 ASP B 98 0 SHEET 2 G 3 HIS B 41 ILE B 48 -1 N VAL B 43 O LEU B 97 SHEET 3 G 3 ALA B 164 ASP B 165 -1 O ALA B 164 N GLY B 42 SHEET 1 H 3 MSE B 95 ASP B 98 0 SHEET 2 H 3 HIS B 41 ILE B 48 -1 N VAL B 43 O LEU B 97 SHEET 3 H 3 SER B 168 GLU B 173 1 O VAL B 172 N ARG B 46 SHEET 1 I 5 TYR B 77 VAL B 83 0 SHEET 2 I 5 LEU B 66 TYR B 71 -1 N LEU B 68 O ARG B 81 SHEET 3 I 5 ASN B 103 GLY B 110 -1 O VAL B 107 N LEU B 69 SHEET 4 I 5 TYR B 155 ALA B 162 -1 O LEU B 159 N PHE B 106 SHEET 5 I 5 MSE B 175 LYS B 176 -1 O MSE B 175 N TRP B 156 SHEET 1 J 3 PHE B 119 MSE B 121 0 SHEET 2 J 3 VAL B 136 LEU B 138 -1 O GLU B 137 N LEU B 120 SHEET 3 J 3 LEU B 208 PHE B 209 -1 O PHE B 209 N VAL B 136 SHEET 1 K 6 ALA B 227 PHE B 235 0 SHEET 2 K 6 GLU B 241 THR B 251 -1 O VAL B 242 N GLY B 234 SHEET 3 K 6 ASN B 179 GLN B 187 -1 N VAL B 183 O ALA B 247 SHEET 4 K 6 GLU B 306 LEU B 313 1 O MSE B 309 N VAL B 184 SHEET 5 K 6 TYR B 323 ILE B 326 -1 O LYS B 325 N ILE B 310 SHEET 6 K 6 TRP B 329 ARG B 332 -1 O VAL B 331 N ILE B 324 SHEET 1 L 4 VAL B 221 TYR B 223 0 SHEET 2 L 4 PHE B 198 ASP B 204 -1 N ILE B 202 O TYR B 223 SHEET 3 L 4 LYS B 263 ARG B 268 -1 O THR B 265 N GLU B 201 SHEET 4 L 4 GLU B 274 PRO B 279 -1 O ILE B 276 N VAL B 266 LINK C ASN A 52 N MSE A 53 1555 1555 1.34 LINK C MSE A 53 N GLU A 54 1555 1555 1.35 LINK C ARG A 94 N MSE A 95 1555 1555 1.31 LINK C MSE A 95 N LYS A 96 1555 1555 1.34 LINK C LEU A 120 N MSE A 121 1555 1555 1.34 LINK C MSE A 121 N LYS A 122 1555 1555 1.31 LINK C GLU A 173 N MSE A 174 1555 1555 1.33 LINK C MSE A 174 N MSE A 175 1555 1555 1.35 LINK C MSE A 175 N LYS A 176 1555 1555 1.34 LINK C GLN A 187 N MSE A 188 1555 1555 1.34 LINK C MSE A 188 N ASN A 189 1555 1555 1.35 LINK C GLY A 219 N MSE A 220 1555 1555 1.34 LINK C MSE A 220 N VAL A 221 1555 1555 1.33 LINK C LEU A 254 N MSE A 255 1555 1555 1.34 LINK C MSE A 255 N VAL A 256 1555 1555 1.34 LINK C LEU A 285 N MSE A 286 1555 1555 1.37 LINK C MSE A 286 N LEU A 287 1555 1555 1.36 LINK C SER A 294 N MSE A 295 1555 1555 1.34 LINK C MSE A 295 N ASP A 296 1555 1555 1.34 LINK C SER A 308 N MSE A 309 1555 1555 1.33 LINK C MSE A 309 N ILE A 310 1555 1555 1.33 LINK C ASN B 52 N MSE B 53 1555 1555 1.34 LINK C MSE B 53 N GLU B 54 1555 1555 1.34 LINK C ARG B 94 N MSE B 95 1555 1555 1.34 LINK C MSE B 95 N LYS B 96 1555 1555 1.32 LINK C LEU B 120 N MSE B 121 1555 1555 1.34 LINK C MSE B 121 N LYS B 122 1555 1555 1.34 LINK C GLU B 173 N MSE B 174 1555 1555 1.32 LINK C MSE B 174 N MSE B 175 1555 1555 1.34 LINK C MSE B 175 N LYS B 176 1555 1555 1.34 LINK C GLN B 187 N MSE B 188 1555 1555 1.34 LINK C MSE B 188 N ASN B 189 1555 1555 1.35 LINK C GLY B 219 N MSE B 220 1555 1555 1.34 LINK C MSE B 220 N VAL B 221 1555 1555 1.32 LINK C LEU B 254 N MSE B 255 1555 1555 1.32 LINK C MSE B 255 N VAL B 256 1555 1555 1.34 LINK C LEU B 285 N MSE B 286 1555 1555 1.34 LINK C MSE B 286 N LEU B 287 1555 1555 1.35 LINK C SER B 294 N MSE B 295 1555 1555 1.35 LINK C MSE B 295 N ASP B 296 1555 1555 1.34 LINK C SER B 308 N MSE B 309 1555 1555 1.33 LINK C MSE B 309 N ILE B 310 1555 1555 1.33 LINK OD1 ASP A 64 MG MG A 401 1555 1555 2.22 LINK OD2 ASP A 64 MG MG A 401 1555 1555 2.58 LINK OD1 ASN A 179 MG MG A 402 1555 1555 2.33 LINK O LEU A 301 MG MG A 402 1555 1555 2.23 LINK O GLU A 304 MG MG A 402 1555 1555 2.22 LINK MG MG A 402 O HOH A 501 1555 1555 2.88 LINK MG MG A 402 O HOH A 507 1555 1555 2.16 LINK OD1 ASP B 64 MG MG B 401 1555 1555 2.12 LINK OD2 ASP B 64 MG MG B 401 1555 1555 2.76 LINK OD1 ASN B 179 MG MG B 402 1555 1555 2.38 LINK O LEU B 301 MG MG B 402 1555 1555 2.24 LINK O GLU B 304 MG MG B 402 1555 1555 2.26 LINK MG MG B 402 O HOH B 501 1555 1555 2.48 LINK MG MG B 402 O HOH B 505 1555 1555 2.62 SITE 1 AC1 4 ASP A 64 CYS A 65 CYS A 114 HIS A 152 SITE 1 AC2 6 ASN A 179 LEU A 301 ASP A 302 GLU A 304 SITE 2 AC2 6 HOH A 501 HOH A 507 SITE 1 AC3 4 ASP B 64 CYS B 65 CYS B 114 HIS B 152 SITE 1 AC4 6 ASN B 179 LEU B 301 ASP B 302 GLU B 304 SITE 2 AC4 6 HOH B 501 HOH B 505 SITE 1 AC5 1 GLU B 274 SITE 1 AC6 4 MSE B 286 SER B 289 ASP B 290 ASP B 335 CRYST1 42.803 102.324 74.466 90.00 98.35 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023363 0.000000 0.003429 0.00000 SCALE2 0.000000 0.009773 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013573 0.00000