HEADER LIGASE 13-MAY-14 4QDI TITLE CRYSTAL STRUCTURE II OF MURF FROM ACINETOBACTER BAUMANNII COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.3.2.10; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 557600; SOURCE 4 STRAIN: AB307-0294; SOURCE 5 GENE: ABBFA_000315; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSET-A KEYWDS UDP-N-ACETYLMURAMOYL-TRIPEPTIDE-D-ALANYL-D-ANANINE LIGASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.AN,C.S.JEONG,S.S.CHA REVDAT 2 20-MAR-24 4QDI 1 REMARK SEQADV LINK REVDAT 1 01-APR-15 4QDI 0 JRNL AUTH S.S.CHA,Y.J.AN,C.S.JEONG,J.H.YU,K.M.CHUNG JRNL TITL ATP-BINDING MODE INCLUDING A CARBAMOYLATED LYSINE AND TWO JRNL TITL 2 MG(2+) IONS, AND SUBSTRATE-BINDING MODE IN ACINETOBACTER JRNL TITL 3 BAUMANNII MURF JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 450 1045 2014 JRNL REFN ISSN 0006-291X JRNL PMID 24978312 JRNL DOI 10.1016/J.BBRC.2014.06.108 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 86789.180 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 50542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5096 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7267 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 810 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3444 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 265 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.82000 REMARK 3 B22 (A**2) : 5.82000 REMARK 3 B33 (A**2) : -11.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.30 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.33 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.740 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 45.27 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : ATP.PAR REMARK 3 PARAMETER FILE 7 : EDO.PAR REMARK 3 PARAMETER FILE 8 : UDP.PAR REMARK 3 PARAMETER FILE 9 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : ATP.TOP REMARK 3 TOPOLOGY FILE 7 : EDO.TOP REMARK 3 TOPOLOGY FILE 8 : UDP.TOP REMARK 3 TOPOLOGY FILE 9 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QDI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000085917. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : PH 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : DCM SI (111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50545 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE : CITRIC ACID PH REMARK 280 5.5, 20%(W/V) POLYETHYLENE GLYCOL (PEG) 3,000, MICRO-BATCH REMARK 280 CRYSTALLIZATION METHOD, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.80200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.40100 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.40100 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 86.80200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 THR A 6 REMARK 465 SER A 7 REMARK 465 THR A 8 REMARK 465 LEU A 466 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 9 CG1 CG2 REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 LEU A 203 CG CD1 CD2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 PRO A 347 CG CD REMARK 470 ASP A 376 CG OD1 OD2 REMARK 470 GLU A 381 CG CD OE1 OE2 REMARK 470 LEU A 389 CG CD1 CD2 REMARK 470 GLU A 391 CG CD OE1 OE2 REMARK 470 LEU A 392 CG CD1 CD2 REMARK 470 SER A 405 OG REMARK 470 GLU A 409 CG CD OE1 OE2 REMARK 470 LEU A 413 CG CD1 CD2 REMARK 470 LYS A 419 CG CD CE NZ REMARK 470 GLU A 426 CG CD OE1 OE2 REMARK 470 ASN A 433 CG OD1 ND2 REMARK 470 LEU A 434 CG CD1 CD2 REMARK 470 ILE A 435 CG1 CG2 CD1 REMARK 470 GLN A 439 CG CD OE1 NE2 REMARK 470 LYS A 465 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 10 -177.85 -64.43 REMARK 500 LYS A 29 29.50 47.78 REMARK 500 ASN A 151 -166.65 -113.62 REMARK 500 GLN A 178 125.53 -39.17 REMARK 500 PRO A 287 42.25 -75.25 REMARK 500 ALA A 334 -156.75 60.35 REMARK 500 PRO A 335 22.31 -69.59 REMARK 500 ALA A 345 145.16 -174.25 REMARK 500 GLU A 373 20.94 161.83 REMARK 500 LEU A 374 64.63 -108.03 REMARK 500 PRO A 393 9.42 -57.88 REMARK 500 LEU A 413 24.51 -79.92 REMARK 500 HIS A 414 40.72 -144.98 REMARK 500 GLN A 439 -166.93 55.29 REMARK 500 PRO A 440 88.60 -68.77 REMARK 500 HIS A 454 57.60 30.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 126 OG1 REMARK 620 2 GLU A 172 OE2 96.6 REMARK 620 3 ATP A 501 O2G 139.0 99.8 REMARK 620 4 ATP A 501 O1B 72.5 105.0 67.1 REMARK 620 5 HOH A 794 O 106.9 112.7 100.8 141.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QF5 RELATED DB: PDB DBREF 4QDI A 1 466 UNP B7GVN5 B7GVN5_ACIB3 1 466 SEQADV 4QDI HIS A -5 UNP B7GVN5 EXPRESSION TAG SEQADV 4QDI HIS A -4 UNP B7GVN5 EXPRESSION TAG SEQADV 4QDI HIS A -3 UNP B7GVN5 EXPRESSION TAG SEQADV 4QDI HIS A -2 UNP B7GVN5 EXPRESSION TAG SEQADV 4QDI HIS A -1 UNP B7GVN5 EXPRESSION TAG SEQADV 4QDI HIS A 0 UNP B7GVN5 EXPRESSION TAG SEQRES 1 A 472 HIS HIS HIS HIS HIS HIS MET HIS THR SER THR THR SER SEQRES 2 A 472 THR VAL PRO LEU GLU PRO TRP THR ALA GLN GLN LEU GLN SEQRES 3 A 472 GLN ALA THR GLN GLY TYR TRP HIS LYS ASP GLN ILE PRO SEQRES 4 A 472 GLN THR GLU ILE LYS ARG ILE LEU THR ASP SER ARG HIS SEQRES 5 A 472 ALA GLU SER GLY ASP ALA PHE LEU ALA LEU LYS GLY GLU SEQRES 6 A 472 ARG PHE ASP ALA HIS ASN PHE VAL ALA GLN VAL VAL ALA SEQRES 7 A 472 ASN GLY CYS GLN VAL ALA ILE VAL GLU ARG PRO ILE ASP SEQRES 8 A 472 ALA GLU ILE ALA GLN LEU VAL VAL ALA ASP THR ARG LEU SEQRES 9 A 472 ALA LEU GLY GLN LEU GLY ALA TYR ARG ARG GLU GLN ASN SEQRES 10 A 472 ALA GLN LEU LYS VAL ILE ALA LEU THR GLY SER SER GLY SEQRES 11 A 472 LYS THR THR THR LYS GLU MET LEU GLY SER ILE LEU SER SEQRES 12 A 472 ARG LEU ALA PRO THR LEU ILE THR ARG GLY ASN LEU ASN SEQRES 13 A 472 ASN ASP LEU GLY VAL PRO MET MET LEU LEU GLU LEU ARG SEQRES 14 A 472 LYS GLU HIS GLN TYR ALA VAL MET GLU LEU GLY ALA ASN SEQRES 15 A 472 HIS GLN GLY GLU ILE ASP TYR THR SER LYS ILE VAL GLN SEQRES 16 A 472 PRO HIS VAL ALA GLY ILE LEU ASN ILE GLY THR ALA HIS SEQRES 17 A 472 LEU GLY GLU PHE GLY GLY ARG ASP GLY ILE CYS ARG ALA SEQRES 18 A 472 LYS SER GLU ILE TYR ARG HIS ILE LEU PRO GLN GLY VAL SEQRES 19 A 472 ALA ILE VAL PRO GLN GLN ASP ASP PHE THR ALA GLU ILE SEQRES 20 A 472 ARG GLU ALA ALA LYS SER HIS GLN ILE MET SER PHE GLY SEQRES 21 A 472 GLU GLY GLY ASP VAL PHE ALA THR GLU ILE GLU LEU LEU SEQRES 22 A 472 PRO GLN SER ALA ASN PHE GLN LEU HIS THR PRO GLN GLY SEQRES 23 A 472 SER SER PHE VAL ARG LEU PRO PHE ALA GLY GLU HIS ASN SEQRES 24 A 472 VAL GLN ASN ALA THR ALA ALA VAL ALA PHE ALA LEU ALA SEQRES 25 A 472 LEU GLY VAL SER LEU GLU ASP ILE VAL LYS GLY LEU GLU SEQRES 26 A 472 GLN ALA GLN GLY ALA LYS GLY ARG LEU ASN PHE ILE GLN SEQRES 27 A 472 LYS ALA PRO HIS LEU PHE ILE ASP ASP THR TYR ASN ALA SEQRES 28 A 472 ASN PRO THR SER MET ARG ALA ALA ALA GLN VAL LEU LEU SEQRES 29 A 472 GLN GLN ASN GLY ILE LYS VAL MET VAL MET GLY ASP ILE SEQRES 30 A 472 GLY GLU LEU GLY ASP SER SER TRP GLN GLU HIS HIS ASP SEQRES 31 A 472 LEU GLY ARG ASP LEU ALA GLU LEU PRO LEU ASP HIS ILE SEQRES 32 A 472 VAL ALA VAL GLY GLN PHE ALA SER ALA ALA LEU GLU GLY SEQRES 33 A 472 ALA GLY LEU HIS SER THR LYS LEU LYS ALA PHE GLN THR SEQRES 34 A 472 GLN ALA GLU ALA LEU PRO PHE LEU ILE ASN LEU ILE GLN SEQRES 35 A 472 THR HIS GLN PRO GLN SER MET SER PHE LEU PHE LYS GLY SEQRES 36 A 472 SER ARG PHE THR HIS MET GLU THR LEU MET ALA ASP LEU SEQRES 37 A 472 MET GLU LYS LEU HET ATP A 501 31 HET UDP A 502 25 HET MG A 503 1 HET EDO A 504 4 HET EDO A 505 4 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 UDP C9 H14 N2 O12 P2 FORMUL 4 MG MG 2+ FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 HOH *265(H2 O) HELIX 1 1 THR A 15 GLN A 24 1 10 HELIX 2 2 LYS A 29 GLN A 31 5 3 HELIX 3 3 PHE A 66 ASN A 73 1 8 HELIX 4 4 ASP A 95 ASN A 111 1 17 HELIX 5 5 GLY A 124 ALA A 140 1 17 HELIX 6 6 LEU A 153 LEU A 160 1 8 HELIX 7 7 GLY A 179 GLN A 189 1 11 HELIX 8 8 GLY A 207 SER A 217 1 11 HELIX 9 9 GLU A 218 ARG A 221 5 4 HELIX 10 10 PHE A 237 ALA A 245 1 9 HELIX 11 11 GLY A 290 LEU A 307 1 18 HELIX 12 12 SER A 310 GLN A 320 1 11 HELIX 13 13 ASN A 346 GLN A 359 1 14 HELIX 14 14 SER A 377 ALA A 390 1 14 HELIX 15 15 PHE A 403 GLY A 412 1 10 HELIX 16 16 THR A 423 THR A 437 1 15 HELIX 17 17 SER A 450 THR A 453 5 4 HELIX 18 18 HIS A 454 GLU A 464 1 11 SHEET 1 A 5 TYR A 26 TRP A 27 0 SHEET 2 A 5 ALA A 89 VAL A 92 -1 O VAL A 92 N TYR A 26 SHEET 3 A 5 VAL A 77 VAL A 80 1 N ALA A 78 O LEU A 91 SHEET 4 A 5 ASP A 51 LEU A 54 1 N PHE A 53 O ILE A 79 SHEET 5 A 5 ARG A 39 LEU A 41 1 N LEU A 41 O LEU A 54 SHEET 1 B 2 LYS A 57 GLY A 58 0 SHEET 2 B 2 PHE A 61 ASP A 62 -1 O PHE A 61 N GLY A 58 SHEET 1 C 6 THR A 142 ILE A 144 0 SHEET 2 C 6 TYR A 168 GLU A 172 1 O VAL A 170 N LEU A 143 SHEET 3 C 6 LYS A 115 THR A 120 1 N ILE A 117 O MET A 171 SHEET 4 C 6 VAL A 192 ILE A 195 1 N VAL A 192 O VAL A 116 SHEET 5 C 6 VAL A 228 PRO A 232 1 O ILE A 230 N ALA A 193 SHEET 6 C 6 GLN A 249 PHE A 253 1 O GLN A 249 N ALA A 229 SHEET 1 D 3 PHE A 260 LEU A 266 0 SHEET 2 D 3 ALA A 271 THR A 277 -1 O ASN A 272 N GLU A 265 SHEET 3 D 3 GLY A 280 LEU A 286 -1 O SER A 282 N LEU A 275 SHEET 1 E 4 ASN A 329 LYS A 333 0 SHEET 2 E 4 HIS A 336 ASP A 340 -1 O HIS A 336 N LYS A 333 SHEET 3 E 4 MET A 443 PHE A 447 1 O PHE A 445 N ILE A 339 SHEET 4 E 4 ILE A 363 VAL A 367 1 N ILE A 363 O SER A 444 SHEET 1 F 2 ILE A 397 VAL A 400 0 SHEET 2 F 2 LEU A 418 PHE A 421 1 O LYS A 419 N ILE A 397 LINK OG1 THR A 126 MG MG A 503 1555 1555 2.50 LINK OE2 GLU A 172 MG MG A 503 1555 1555 2.47 LINK O2G ATP A 501 MG MG A 503 1555 1555 2.56 LINK O1B ATP A 501 MG MG A 503 1555 1555 2.82 LINK MG MG A 503 O HOH A 794 1555 1555 2.64 CISPEP 1 VAL A 9 PRO A 10 0 -0.08 SITE 1 AC1 21 SER A 122 SER A 123 GLY A 124 LYS A 125 SITE 2 AC1 21 THR A 126 THR A 127 ASN A 197 HIS A 292 SITE 3 AC1 21 ASN A 296 ARG A 327 TYR A 343 ASN A 344 SITE 4 AC1 21 SER A 349 MG A 503 HOH A 664 HOH A 692 SITE 5 AC1 21 HOH A 735 HOH A 776 HOH A 782 HOH A 791 SITE 6 AC1 21 HOH A 853 SITE 1 AC2 12 THR A 42 PHE A 61 ARG A 97 LEU A 153 SITE 2 AC2 12 GLN A 226 GLN A 249 HOH A 611 HOH A 769 SITE 3 AC2 12 HOH A 792 HOH A 835 HOH A 836 HOH A 855 SITE 1 AC3 4 THR A 126 GLU A 172 ATP A 501 HOH A 794 SITE 1 AC4 7 ASP A 152 TYR A 183 PHE A 283 HOH A 646 SITE 2 AC4 7 HOH A 736 HOH A 737 HOH A 842 SITE 1 AC5 6 PRO A 13 TRP A 14 GLN A 18 ARG A 107 SITE 2 AC5 6 HOH A 663 HOH A 854 CRYST1 85.783 85.783 130.203 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011657 0.006730 0.000000 0.00000 SCALE2 0.000000 0.013461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007680 0.00000