HEADER LIGASE 19-MAY-14 4QF5 TITLE CRYSTAL STRUCTURE I OF MURF FROM ACINETOBACTER BAUMANNII COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 6.3.2.10; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 557600; SOURCE 4 STRAIN: AB307-0294; SOURCE 5 GENE: ABBFA_000315; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSET-A KEYWDS UDP-N-ACETYLMURAMOYL-TRIPEPTIDE-D-ALANYL-D-ANANINE LIGASE, MURF, KEYWDS 2 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.AN,C.S.JEONG,S.S.CHA REVDAT 1 01-APR-15 4QF5 0 JRNL AUTH S.S.CHA,Y.J.AN,C.S.JEONG,J.H.YU,K.M.CHUNG JRNL TITL ATP-BINDING MODE INCLUDING A CARBAMOYLATED LYSINE AND TWO JRNL TITL 2 MG(2+) IONS, AND SUBSTRATE-BINDING MODE IN ACINETOBACTER JRNL TITL 3 BAUMANNII MURF JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 450 1045 2014 JRNL REFN ISSN 0006-291X JRNL PMID 24978312 JRNL DOI 10.1016/J.BBRC.2014.06.108 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.540 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 24046 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1236 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.4425 - 5.8178 0.98 2632 144 0.1749 0.2282 REMARK 3 2 5.8178 - 4.6205 0.99 2594 145 0.1744 0.2138 REMARK 3 3 4.6205 - 4.0372 0.99 2562 136 0.1655 0.2329 REMARK 3 4 4.0372 - 3.6684 0.99 2563 149 0.1782 0.2273 REMARK 3 5 3.6684 - 3.4057 0.98 2541 146 0.1921 0.2527 REMARK 3 6 3.4057 - 3.2050 0.98 2528 135 0.2059 0.2880 REMARK 3 7 3.2050 - 3.0445 0.97 2526 136 0.2317 0.2730 REMARK 3 8 3.0445 - 2.9121 0.95 2463 127 0.2425 0.3209 REMARK 3 9 2.9121 - 2.8000 0.94 2401 118 0.2446 0.3149 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 7107 REMARK 3 ANGLE : 1.246 9651 REMARK 3 CHIRALITY : 0.032 1100 REMARK 3 PLANARITY : 0.004 1264 REMARK 3 DIHEDRAL : 13.670 2573 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QF5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAY-14. REMARK 100 THE RCSB ID CODE IS RCSB085976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : DCM SI (111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24942 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16M MAGNESIUM CHLORIDE, 0.08M TRIS- REMARK 280 HCL PH 8.5, 24%(W/V) POLYETHYLENE GLYCOL(PEG) 4,000, 20%(W/V) REMARK 280 GLYCEROL, MICRO-BATCH CRYSTALLIZATION METHOD, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.85800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 THR A 6 REMARK 465 LEU A 466 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 HIS B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 THR B 5 REMARK 465 THR B 6 REMARK 465 SER B 7 REMARK 465 THR B 8 REMARK 465 GLY B 412 REMARK 465 LEU B 413 REMARK 465 HIS B 414 REMARK 465 SER B 415 REMARK 465 LEU B 466 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 ARG A 60 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 176 CG OD1 ND2 REMARK 470 GLN A 178 CG CD OE1 NE2 REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 GLU A 265 CG CD OE1 OE2 REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 GLU A 373 CG CD OE1 OE2 REMARK 470 GLU A 381 CG CD OE1 OE2 REMARK 470 SER A 405 OG REMARK 470 GLU A 409 CG CD OE1 OE2 REMARK 470 GLN A 422 CG CD OE1 NE2 REMARK 470 GLU A 426 CG CD OE1 OE2 REMARK 470 LYS A 465 CG CD CE NZ REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 ARG B 60 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 164 CG CD CE NZ REMARK 470 GLU B 312 CG CD OE1 OE2 REMARK 470 LYS B 333 CG CD CE NZ REMARK 470 GLU B 373 CG CD OE1 OE2 REMARK 470 SER B 405 OG REMARK 470 LEU B 408 CG CD1 CD2 REMARK 470 GLU B 409 CG CD OE1 OE2 REMARK 470 GLU B 426 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 29 19.74 59.16 REMARK 500 ASP A 30 15.54 56.79 REMARK 500 ASP A 62 88.05 -160.80 REMARK 500 ASN A 151 -164.45 -106.29 REMARK 500 GLN A 189 70.61 54.80 REMARK 500 GLN A 234 78.26 -110.17 REMARK 500 PRO A 287 31.54 -78.11 REMARK 500 PRO A 393 48.75 -71.64 REMARK 500 HIS A 414 39.01 -92.51 REMARK 500 GLN A 439 -175.55 59.85 REMARK 500 PRO A 440 96.64 -66.27 REMARK 500 HIS A 454 63.20 32.95 REMARK 500 ASP B 30 14.31 57.11 REMARK 500 ASP B 62 87.87 -161.04 REMARK 500 ASN B 111 73.52 -100.36 REMARK 500 ASN B 151 -163.43 -106.41 REMARK 500 GLN B 189 70.48 55.34 REMARK 500 GLN B 234 77.68 -111.55 REMARK 500 PRO B 287 31.26 -77.65 REMARK 500 PRO B 393 49.65 -72.49 REMARK 500 LYS B 417 -2.75 -169.27 REMARK 500 GLN B 439 -75.63 3.66 REMARK 500 HIS B 454 62.67 31.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 501 O1B REMARK 620 2 THR A 126 OG1 69.1 REMARK 620 3 GLU A 172 OE2 85.5 91.0 REMARK 620 4 ATP A 501 O1G 74.7 140.1 69.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP B 501 O1B REMARK 620 2 GLU B 172 OE2 68.7 REMARK 620 3 THR B 126 OG1 67.6 64.3 REMARK 620 4 ATP B 501 O1G 73.9 89.0 138.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QDI RELATED DB: PDB DBREF 4QF5 A 1 466 UNP B7GVN5 B7GVN5_ACIB3 1 466 DBREF 4QF5 B 1 466 UNP B7GVN5 B7GVN5_ACIB3 1 466 SEQADV 4QF5 HIS A -5 UNP B7GVN5 EXPRESSION TAG SEQADV 4QF5 HIS A -4 UNP B7GVN5 EXPRESSION TAG SEQADV 4QF5 HIS A -3 UNP B7GVN5 EXPRESSION TAG SEQADV 4QF5 HIS A -2 UNP B7GVN5 EXPRESSION TAG SEQADV 4QF5 HIS A -1 UNP B7GVN5 EXPRESSION TAG SEQADV 4QF5 HIS A 0 UNP B7GVN5 EXPRESSION TAG SEQADV 4QF5 HIS B -5 UNP B7GVN5 EXPRESSION TAG SEQADV 4QF5 HIS B -4 UNP B7GVN5 EXPRESSION TAG SEQADV 4QF5 HIS B -3 UNP B7GVN5 EXPRESSION TAG SEQADV 4QF5 HIS B -2 UNP B7GVN5 EXPRESSION TAG SEQADV 4QF5 HIS B -1 UNP B7GVN5 EXPRESSION TAG SEQADV 4QF5 HIS B 0 UNP B7GVN5 EXPRESSION TAG SEQRES 1 A 472 HIS HIS HIS HIS HIS HIS MET HIS THR SER THR THR SER SEQRES 2 A 472 THR VAL PRO LEU GLU PRO TRP THR ALA GLN GLN LEU GLN SEQRES 3 A 472 GLN ALA THR GLN GLY TYR TRP HIS LYS ASP GLN ILE PRO SEQRES 4 A 472 GLN THR GLU ILE LYS ARG ILE LEU THR ASP SER ARG HIS SEQRES 5 A 472 ALA GLU SER GLY ASP ALA PHE LEU ALA LEU LYS GLY GLU SEQRES 6 A 472 ARG PHE ASP ALA HIS ASN PHE VAL ALA GLN VAL VAL ALA SEQRES 7 A 472 ASN GLY CYS GLN VAL ALA ILE VAL GLU ARG PRO ILE ASP SEQRES 8 A 472 ALA GLU ILE ALA GLN LEU VAL VAL ALA ASP THR ARG LEU SEQRES 9 A 472 ALA LEU GLY GLN LEU GLY ALA TYR ARG ARG GLU GLN ASN SEQRES 10 A 472 ALA GLN LEU LYS VAL ILE ALA LEU THR GLY SER SER GLY SEQRES 11 A 472 LYS THR THR THR LYS GLU MET LEU GLY SER ILE LEU SER SEQRES 12 A 472 ARG LEU ALA PRO THR LEU ILE THR ARG GLY ASN LEU ASN SEQRES 13 A 472 ASN ASP LEU GLY VAL PRO MET MET LEU LEU GLU LEU ARG SEQRES 14 A 472 LYS GLU HIS GLN TYR ALA VAL MET GLU LEU GLY ALA ASN SEQRES 15 A 472 HIS GLN GLY GLU ILE ASP TYR THR SER LYS ILE VAL GLN SEQRES 16 A 472 PRO HIS VAL ALA GLY ILE LEU ASN ILE GLY THR ALA HIS SEQRES 17 A 472 LEU GLY GLU PHE GLY GLY ARG ASP GLY ILE CYS ARG ALA SEQRES 18 A 472 KCX SER GLU ILE TYR ARG HIS ILE LEU PRO GLN GLY VAL SEQRES 19 A 472 ALA ILE VAL PRO GLN GLN ASP ASP PHE THR ALA GLU ILE SEQRES 20 A 472 ARG GLU ALA ALA LYS SER HIS GLN ILE MET SER PHE GLY SEQRES 21 A 472 GLU GLY GLY ASP VAL PHE ALA THR GLU ILE GLU LEU LEU SEQRES 22 A 472 PRO GLN SER ALA ASN PHE GLN LEU HIS THR PRO GLN GLY SEQRES 23 A 472 SER SER PHE VAL ARG LEU PRO PHE ALA GLY GLU HIS ASN SEQRES 24 A 472 VAL GLN ASN ALA THR ALA ALA VAL ALA PHE ALA LEU ALA SEQRES 25 A 472 LEU GLY VAL SER LEU GLU ASP ILE VAL LYS GLY LEU GLU SEQRES 26 A 472 GLN ALA GLN GLY ALA LYS GLY ARG LEU ASN PHE ILE GLN SEQRES 27 A 472 LYS ALA PRO HIS LEU PHE ILE ASP ASP THR TYR ASN ALA SEQRES 28 A 472 ASN PRO THR SER MET ARG ALA ALA ALA GLN VAL LEU LEU SEQRES 29 A 472 GLN GLN ASN GLY ILE LYS VAL MET VAL MET GLY ASP ILE SEQRES 30 A 472 GLY GLU LEU GLY ASP SER SER TRP GLN GLU HIS HIS ASP SEQRES 31 A 472 LEU GLY ARG ASP LEU ALA GLU LEU PRO LEU ASP HIS ILE SEQRES 32 A 472 VAL ALA VAL GLY GLN PHE ALA SER ALA ALA LEU GLU GLY SEQRES 33 A 472 ALA GLY LEU HIS SER THR LYS LEU LYS ALA PHE GLN THR SEQRES 34 A 472 GLN ALA GLU ALA LEU PRO PHE LEU ILE ASN LEU ILE GLN SEQRES 35 A 472 THR HIS GLN PRO GLN SER MET SER PHE LEU PHE LYS GLY SEQRES 36 A 472 SER ARG PHE THR HIS MET GLU THR LEU MET ALA ASP LEU SEQRES 37 A 472 MET GLU LYS LEU SEQRES 1 B 472 HIS HIS HIS HIS HIS HIS MET HIS THR SER THR THR SER SEQRES 2 B 472 THR VAL PRO LEU GLU PRO TRP THR ALA GLN GLN LEU GLN SEQRES 3 B 472 GLN ALA THR GLN GLY TYR TRP HIS LYS ASP GLN ILE PRO SEQRES 4 B 472 GLN THR GLU ILE LYS ARG ILE LEU THR ASP SER ARG HIS SEQRES 5 B 472 ALA GLU SER GLY ASP ALA PHE LEU ALA LEU LYS GLY GLU SEQRES 6 B 472 ARG PHE ASP ALA HIS ASN PHE VAL ALA GLN VAL VAL ALA SEQRES 7 B 472 ASN GLY CYS GLN VAL ALA ILE VAL GLU ARG PRO ILE ASP SEQRES 8 B 472 ALA GLU ILE ALA GLN LEU VAL VAL ALA ASP THR ARG LEU SEQRES 9 B 472 ALA LEU GLY GLN LEU GLY ALA TYR ARG ARG GLU GLN ASN SEQRES 10 B 472 ALA GLN LEU LYS VAL ILE ALA LEU THR GLY SER SER GLY SEQRES 11 B 472 LYS THR THR THR LYS GLU MET LEU GLY SER ILE LEU SER SEQRES 12 B 472 ARG LEU ALA PRO THR LEU ILE THR ARG GLY ASN LEU ASN SEQRES 13 B 472 ASN ASP LEU GLY VAL PRO MET MET LEU LEU GLU LEU ARG SEQRES 14 B 472 LYS GLU HIS GLN TYR ALA VAL MET GLU LEU GLY ALA ASN SEQRES 15 B 472 HIS GLN GLY GLU ILE ASP TYR THR SER LYS ILE VAL GLN SEQRES 16 B 472 PRO HIS VAL ALA GLY ILE LEU ASN ILE GLY THR ALA HIS SEQRES 17 B 472 LEU GLY GLU PHE GLY GLY ARG ASP GLY ILE CYS ARG ALA SEQRES 18 B 472 KCX SER GLU ILE TYR ARG HIS ILE LEU PRO GLN GLY VAL SEQRES 19 B 472 ALA ILE VAL PRO GLN GLN ASP ASP PHE THR ALA GLU ILE SEQRES 20 B 472 ARG GLU ALA ALA LYS SER HIS GLN ILE MET SER PHE GLY SEQRES 21 B 472 GLU GLY GLY ASP VAL PHE ALA THR GLU ILE GLU LEU LEU SEQRES 22 B 472 PRO GLN SER ALA ASN PHE GLN LEU HIS THR PRO GLN GLY SEQRES 23 B 472 SER SER PHE VAL ARG LEU PRO PHE ALA GLY GLU HIS ASN SEQRES 24 B 472 VAL GLN ASN ALA THR ALA ALA VAL ALA PHE ALA LEU ALA SEQRES 25 B 472 LEU GLY VAL SER LEU GLU ASP ILE VAL LYS GLY LEU GLU SEQRES 26 B 472 GLN ALA GLN GLY ALA LYS GLY ARG LEU ASN PHE ILE GLN SEQRES 27 B 472 LYS ALA PRO HIS LEU PHE ILE ASP ASP THR TYR ASN ALA SEQRES 28 B 472 ASN PRO THR SER MET ARG ALA ALA ALA GLN VAL LEU LEU SEQRES 29 B 472 GLN GLN ASN GLY ILE LYS VAL MET VAL MET GLY ASP ILE SEQRES 30 B 472 GLY GLU LEU GLY ASP SER SER TRP GLN GLU HIS HIS ASP SEQRES 31 B 472 LEU GLY ARG ASP LEU ALA GLU LEU PRO LEU ASP HIS ILE SEQRES 32 B 472 VAL ALA VAL GLY GLN PHE ALA SER ALA ALA LEU GLU GLY SEQRES 33 B 472 ALA GLY LEU HIS SER THR LYS LEU LYS ALA PHE GLN THR SEQRES 34 B 472 GLN ALA GLU ALA LEU PRO PHE LEU ILE ASN LEU ILE GLN SEQRES 35 B 472 THR HIS GLN PRO GLN SER MET SER PHE LEU PHE LYS GLY SEQRES 36 B 472 SER ARG PHE THR HIS MET GLU THR LEU MET ALA ASP LEU SEQRES 37 B 472 MET GLU LYS LEU MODRES 4QF5 KCX A 216 LYS LYSINE NZ-CARBOXYLIC ACID MODRES 4QF5 KCX B 216 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX A 216 12 HET KCX B 216 12 HET ATP A 501 31 HET MG A 502 1 HET MG A 503 1 HET ATP B 501 31 HET MG B 502 1 HET MG B 503 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 MG 4(MG 2+) HELIX 1 1 THR A 15 GLN A 24 1 10 HELIX 2 2 LYS A 29 GLN A 31 5 3 HELIX 3 3 ASP A 62 ASN A 65 5 4 HELIX 4 4 PHE A 66 ASN A 73 1 8 HELIX 5 5 ASP A 95 ASN A 111 1 17 HELIX 6 6 GLY A 124 SER A 137 1 14 HELIX 7 7 LEU A 153 LEU A 160 1 8 HELIX 8 8 GLY A 179 GLN A 189 1 11 HELIX 9 9 HIS A 202 GLY A 207 1 6 HELIX 10 10 GLY A 208 SER A 217 1 10 HELIX 11 11 GLU A 218 ARG A 221 5 4 HELIX 12 12 PHE A 237 ALA A 245 1 9 HELIX 13 13 GLY A 290 LEU A 307 1 18 HELIX 14 14 SER A 310 GLN A 320 1 11 HELIX 15 15 ASN A 346 GLN A 359 1 14 HELIX 16 16 SER A 377 LEU A 392 1 16 HELIX 17 17 PHE A 403 GLY A 412 1 10 HELIX 18 18 LEU A 413 THR A 416 5 4 HELIX 19 19 THR A 423 HIS A 438 1 16 HELIX 20 20 SER A 450 THR A 453 5 4 HELIX 21 21 HIS A 454 LYS A 465 1 12 HELIX 22 22 THR B 15 GLN B 24 1 10 HELIX 23 23 LYS B 29 GLN B 31 5 3 HELIX 24 24 ASP B 62 ASN B 65 5 4 HELIX 25 25 PHE B 66 ASN B 73 1 8 HELIX 26 26 ASP B 95 ASN B 111 1 17 HELIX 27 27 GLY B 124 ARG B 138 1 15 HELIX 28 28 LEU B 153 LEU B 160 1 8 HELIX 29 29 GLY B 179 GLN B 189 1 11 HELIX 30 30 HIS B 202 GLY B 207 1 6 HELIX 31 31 GLY B 208 SER B 217 1 10 HELIX 32 32 GLU B 218 ARG B 221 5 4 HELIX 33 33 PHE B 237 ALA B 245 1 9 HELIX 34 34 GLY B 290 LEU B 307 1 18 HELIX 35 35 SER B 310 GLN B 320 1 11 HELIX 36 36 ASN B 346 GLN B 359 1 14 HELIX 37 37 LEU B 374 ASP B 376 5 3 HELIX 38 38 SER B 377 LEU B 392 1 16 HELIX 39 39 PHE B 403 ALA B 411 1 9 HELIX 40 40 THR B 423 HIS B 438 1 16 HELIX 41 41 SER B 450 HIS B 454 5 5 HELIX 42 42 MET B 455 LYS B 465 1 11 SHEET 1 A 5 TYR A 26 TRP A 27 0 SHEET 2 A 5 ALA A 89 VAL A 92 -1 O VAL A 92 N TYR A 26 SHEET 3 A 5 VAL A 77 VAL A 80 1 N ALA A 78 O LEU A 91 SHEET 4 A 5 ASP A 51 LEU A 54 1 N PHE A 53 O ILE A 79 SHEET 5 A 5 ARG A 39 LEU A 41 1 N LEU A 41 O LEU A 54 SHEET 1 B 6 THR A 142 ILE A 144 0 SHEET 2 B 6 TYR A 168 GLU A 172 1 O TYR A 168 N LEU A 143 SHEET 3 B 6 LYS A 115 THR A 120 1 N ILE A 117 O ALA A 169 SHEET 4 B 6 VAL A 192 ILE A 195 1 O VAL A 192 N ALA A 118 SHEET 5 B 6 VAL A 228 PRO A 232 1 O ILE A 230 N ALA A 193 SHEET 6 B 6 GLN A 249 PHE A 253 1 O GLN A 249 N ALA A 229 SHEET 1 C 3 PHE A 260 LEU A 267 0 SHEET 2 C 3 SER A 270 THR A 277 -1 O ASN A 272 N GLU A 265 SHEET 3 C 3 GLY A 280 LEU A 286 -1 O VAL A 284 N PHE A 273 SHEET 1 D 6 ASN A 329 LYS A 333 0 SHEET 2 D 6 HIS A 336 ASP A 341 -1 O PHE A 338 N ILE A 331 SHEET 3 D 6 MET A 443 LYS A 448 1 O MET A 443 N LEU A 337 SHEET 4 D 6 ILE A 363 GLY A 369 1 N VAL A 365 O SER A 444 SHEET 5 D 6 HIS A 396 VAL A 400 1 O VAL A 398 N MET A 366 SHEET 6 D 6 LEU A 418 PHE A 421 1 O LYS A 419 N ILE A 397 SHEET 1 E 5 TYR B 26 TRP B 27 0 SHEET 2 E 5 ALA B 89 VAL B 92 -1 O VAL B 92 N TYR B 26 SHEET 3 E 5 VAL B 77 VAL B 80 1 N ALA B 78 O LEU B 91 SHEET 4 E 5 ASP B 51 LEU B 54 1 N PHE B 53 O ILE B 79 SHEET 5 E 5 ARG B 39 LEU B 41 1 N LEU B 41 O LEU B 54 SHEET 1 F 6 THR B 142 ILE B 144 0 SHEET 2 F 6 TYR B 168 GLU B 172 1 O TYR B 168 N LEU B 143 SHEET 3 F 6 LYS B 115 THR B 120 1 N ILE B 117 O MET B 171 SHEET 4 F 6 VAL B 192 ILE B 195 1 O VAL B 192 N ALA B 118 SHEET 5 F 6 VAL B 228 PRO B 232 1 O ILE B 230 N ALA B 193 SHEET 6 F 6 GLN B 249 PHE B 253 1 O GLN B 249 N ALA B 229 SHEET 1 G 3 PHE B 260 LEU B 267 0 SHEET 2 G 3 SER B 270 THR B 277 -1 O ASN B 272 N GLU B 265 SHEET 3 G 3 GLY B 280 LEU B 286 -1 O VAL B 284 N PHE B 273 SHEET 1 H 6 ASN B 329 LYS B 333 0 SHEET 2 H 6 HIS B 336 ASP B 341 -1 O PHE B 338 N ILE B 331 SHEET 3 H 6 MET B 443 LYS B 448 1 O PHE B 445 N ILE B 339 SHEET 4 H 6 ILE B 363 GLY B 369 1 N VAL B 365 O SER B 444 SHEET 5 H 6 HIS B 396 VAL B 400 1 O VAL B 398 N MET B 366 SHEET 6 H 6 LEU B 418 PHE B 421 1 O PHE B 421 N ALA B 399 LINK C ALA A 215 N KCX A 216 1555 1555 1.33 LINK C KCX A 216 N SER A 217 1555 1555 1.33 LINK C ALA B 215 N KCX B 216 1555 1555 1.33 LINK C KCX B 216 N SER B 217 1555 1555 1.33 LINK O3G ATP B 501 MG MG B 503 1555 1555 2.21 LINK O2G ATP A 501 MG MG A 503 1555 1555 2.25 LINK O1B ATP A 501 MG MG A 502 1555 1555 2.28 LINK O1B ATP B 501 MG MG B 502 1555 1555 2.28 LINK OG1 THR A 126 MG MG A 502 1555 1555 2.45 LINK OE2 GLU A 172 MG MG A 502 1555 1555 2.56 LINK OE2 GLU B 172 MG MG B 502 1555 1555 2.58 LINK O1G ATP A 501 MG MG A 502 1555 1555 2.59 LINK OG1 THR B 126 MG MG B 502 1555 1555 2.67 LINK O1G ATP B 501 MG MG B 502 1555 1555 2.90 CISPEP 1 ALA A 334 PRO A 335 0 -1.15 CISPEP 2 ALA B 334 PRO B 335 0 -0.34 SITE 1 AC1 18 SER A 123 GLY A 124 LYS A 125 THR A 126 SITE 2 AC1 18 THR A 127 ASN A 150 GLU A 172 ASN A 197 SITE 3 AC1 18 HIS A 292 ASN A 296 ARG A 327 LEU A 328 SITE 4 AC1 18 ASP A 341 ASN A 344 SER A 349 LYS A 448 SITE 5 AC1 18 MG A 502 MG A 503 SITE 1 AC2 4 THR A 126 ASN A 150 GLU A 172 ATP A 501 SITE 1 AC3 3 HIS A 202 KCX A 216 ATP A 501 SITE 1 AC4 18 SER B 123 GLY B 124 LYS B 125 THR B 126 SITE 2 AC4 18 THR B 127 ASN B 150 GLU B 172 ASN B 197 SITE 3 AC4 18 HIS B 292 ASN B 296 ARG B 327 ASP B 341 SITE 4 AC4 18 ASN B 344 SER B 349 ALA B 352 LYS B 448 SITE 5 AC4 18 MG B 502 MG B 503 SITE 1 AC5 4 THR B 126 ASN B 150 GLU B 172 ATP B 501 SITE 1 AC6 3 HIS B 202 KCX B 216 ATP B 501 CRYST1 44.559 89.716 126.896 90.00 93.45 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022442 0.000000 0.001354 0.00000 SCALE2 0.000000 0.011146 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007895 0.00000