HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 20-MAY-14 4QFC TITLE CO-CRYSTAL STRUCTURE OF COMPOUND 3 (4-HYDROXY-6-[2-(7-HYDROXY-2-OXO-4- TITLE 2 PHENYL-2H-CHROMEN-6-YL)ETHYL]PYRIDAZIN-3(2H)-ONE) AND FAD BOUND TO TITLE 3 HUMAN DAAO AT 2.4A COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-AMINO-ACID OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DAAO, DAMOX, DAO; COMPND 5 EC: 1.4.3.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DAMOX, DAO, DAO DAMOX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDASE, OXIDOREDUCTASE, DAAO, D-AMINO ACID OXIDASE, FAD DEPENDENT, KEYWDS 2 NMDAR, SCHIZOPHRENIA, D-SERINE COMPETITIVE, OXIDOREDUCTASE- KEYWDS 3 OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.M.LUKACS,L.CHUN REVDAT 9 20-SEP-23 4QFC 1 REMARK LINK REVDAT 8 15-JUL-15 4QFC 1 JRNL REVDAT 7 17-JUN-15 4QFC 1 JRNL REVDAT 6 25-MAR-15 4QFC 1 JRNL REVDAT 5 18-MAR-15 4QFC 1 JRNL REVDAT 4 04-MAR-15 4QFC 1 JRNL REVDAT 3 31-DEC-14 4QFC 1 JRNL REVDAT 2 26-NOV-14 4QFC 1 JRNL REVDAT 1 16-JUL-14 4QFC 0 JRNL AUTH R.T.TERRY-LORENZO,L.E.CHUN,S.P.BROWN,M.L.HEFFERNAN,Q.K.FANG, JRNL AUTH 2 M.A.ORSINI,L.POLLEGIONI,L.W.HARDY,K.L.SPEAR,T.H.LARGE JRNL TITL NOVEL HUMAN D-AMINO ACID OXIDASE INHIBITORS STABILIZE AN JRNL TITL 2 ACTIVE-SITE LID-OPEN CONFORMATION. JRNL REF BIOSCI.REP. V. 34 2014 JRNL REFN ISSN 0144-8463 JRNL PMID 25001371 JRNL DOI 10.1042/BSR20140071 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 28410 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1437 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1991 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5103 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 163 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.427 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.248 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.166 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.595 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5435 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4891 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7444 ; 1.595 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11172 ; 0.819 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 647 ; 6.793 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 244 ;33.841 ;23.443 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 770 ;13.864 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;17.500 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 800 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6146 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1332 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2609 ; 1.952 ; 2.804 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2608 ; 1.951 ; 2.803 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3249 ; 3.126 ; 4.185 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 337 REMARK 3 RESIDUE RANGE : A 401 A 402 REMARK 3 ORIGIN FOR THE GROUP (A): 1.544 9.575 -55.010 REMARK 3 T TENSOR REMARK 3 T11: 0.0376 T22: 0.0132 REMARK 3 T33: 0.0564 T12: -0.0037 REMARK 3 T13: -0.0115 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.1961 L22: 0.0455 REMARK 3 L33: 0.4376 L12: 0.0729 REMARK 3 L13: -0.0131 L23: 0.0259 REMARK 3 S TENSOR REMARK 3 S11: 0.0386 S12: -0.0018 S13: -0.0155 REMARK 3 S21: 0.0037 S22: -0.0122 S23: -0.0026 REMARK 3 S31: 0.0077 S32: 0.0001 S33: -0.0263 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 337 REMARK 3 RESIDUE RANGE : B 402 B 403 REMARK 3 ORIGIN FOR THE GROUP (A): 0.919 27.646 -16.722 REMARK 3 T TENSOR REMARK 3 T11: 0.0276 T22: 0.0950 REMARK 3 T33: 0.0155 T12: -0.0106 REMARK 3 T13: -0.0044 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 0.3677 L22: 0.3270 REMARK 3 L33: 0.2839 L12: -0.1321 REMARK 3 L13: -0.1181 L23: 0.2207 REMARK 3 S TENSOR REMARK 3 S11: -0.0141 S12: -0.1317 S13: 0.0389 REMARK 3 S21: -0.0312 S22: 0.0395 S23: -0.0239 REMARK 3 S31: 0.0354 S32: -0.0097 S33: -0.0254 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4QFC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000085983. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28446 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.1.03 REMARK 200 STARTING MODEL: PDB ENTRY 3CUK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 2 MG/ML IN 50MM SODIUM REMARK 280 PHOSPHATE PH 6.6, 10UM FAD AGAINST 30%PEG2000MME, 0.1M POTASSIUM REMARK 280 THIOCYANATE SUPPLEMENTED WITH 20% ETHYLENE GLYCOL AS CRYO- REMARK 280 PROTECTANT, UNIQUE CRYSTAL ID 246094_H11, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.19500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 129.22500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.46500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 129.22500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.19500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.46500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 219 REMARK 465 GLU A 220 REMARK 465 ARG A 221 REMARK 465 GLY A 222 REMARK 465 GLY A 299 REMARK 465 PRO A 300 REMARK 465 SER A 301 REMARK 465 LYS A 338 REMARK 465 LEU A 339 REMARK 465 SER A 340 REMARK 465 ARG A 341 REMARK 465 MET A 342 REMARK 465 PRO A 343 REMARK 465 PRO A 344 REMARK 465 SER A 345 REMARK 465 HIS A 346 REMARK 465 LEU A 347 REMARK 465 VAL B 26 REMARK 465 LEU B 27 REMARK 465 GLN B 28 REMARK 465 PRO B 59 REMARK 465 ASN B 60 REMARK 465 ASN B 61 REMARK 465 GLU B 220 REMARK 465 ARG B 221 REMARK 465 ARG B 297 REMARK 465 THR B 298 REMARK 465 GLY B 299 REMARK 465 PRO B 300 REMARK 465 SER B 301 REMARK 465 ASN B 302 REMARK 465 LYS B 338 REMARK 465 LEU B 339 REMARK 465 SER B 340 REMARK 465 ARG B 341 REMARK 465 MET B 342 REMARK 465 PRO B 343 REMARK 465 PRO B 344 REMARK 465 SER B 345 REMARK 465 HIS B 346 REMARK 465 LEU B 347 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 28 CG CD OE1 NE2 REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 ARG A 172 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 204 CG CD CE NZ REMARK 470 ASP A 218 CG OD1 OD2 REMARK 470 ILE A 223 CG1 CG2 CD1 REMARK 470 GLN A 254 CG CD OE1 NE2 REMARK 470 GLU A 261 CG CD OE1 OE2 REMARK 470 ARG A 265 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 274 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 279 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 302 CG OD1 ND2 REMARK 470 LYS A 328 CG CD CE NZ REMARK 470 ARG A 332 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 337 CG CD CE NZ REMARK 470 ARG B 22 CG CD NE CZ NH1 NH2 REMARK 470 SER B 25 OG REMARK 470 SER B 57 OG REMARK 470 ASP B 58 CG OD1 OD2 REMARK 470 GLN B 63 CG CD OE1 NE2 REMARK 470 SER B 81 OG REMARK 470 ASN B 83 CG OD1 ND2 REMARK 470 GLU B 100 CG CD OE1 OE2 REMARK 470 ILE B 102 CG1 CG2 CD1 REMARK 470 LYS B 116 CG CD CE NZ REMARK 470 LYS B 142 CG CD CE NZ REMARK 470 LYS B 158 CG CD CE NZ REMARK 470 GLU B 165 CG CD OE1 OE2 REMARK 470 ILE B 223 CG1 CG2 CD1 REMARK 470 LYS B 271 CG CD CE NZ REMARK 470 ASN B 272 CG OD1 ND2 REMARK 470 GLU B 294 CG CD OE1 OE2 REMARK 470 THR B 303 OG1 CG2 REMARK 470 LYS B 328 CG CD CE NZ REMARK 470 ARG B 332 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 335 CG CD OE1 OE2 REMARK 470 LYS B 337 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 191 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 191 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 53 114.06 -165.16 REMARK 500 HIS A 80 49.25 -109.51 REMARK 500 SER A 136 -151.93 -139.70 REMARK 500 CYS A 181 55.01 -119.53 REMARK 500 ASP A 192 87.11 -156.92 REMARK 500 TYR A 314 31.54 -143.50 REMARK 500 GLN B 53 118.58 -164.93 REMARK 500 SER B 136 -152.19 -125.87 REMARK 500 CYS B 181 60.49 -119.28 REMARK 500 TYR B 224 33.65 -144.98 REMARK 500 TYR B 314 31.15 -143.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 29 LEU A 30 149.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 401 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 122 O REMARK 620 2 PHE B 125 O 72.3 REMARK 620 3 TYR B 128 O 106.4 75.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 31T A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 31T B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QFD RELATED DB: PDB REMARK 900 DAAO BOUND TO SEP0374036 DBREF 4QFC A 1 347 UNP P14920 OXDA_HUMAN 1 347 DBREF 4QFC B 1 347 UNP P14920 OXDA_HUMAN 1 347 SEQRES 1 A 347 MET ARG VAL VAL VAL ILE GLY ALA GLY VAL ILE GLY LEU SEQRES 2 A 347 SER THR ALA LEU CYS ILE HIS GLU ARG TYR HIS SER VAL SEQRES 3 A 347 LEU GLN PRO LEU ASP ILE LYS VAL TYR ALA ASP ARG PHE SEQRES 4 A 347 THR PRO LEU THR THR THR ASP VAL ALA ALA GLY LEU TRP SEQRES 5 A 347 GLN PRO TYR LEU SER ASP PRO ASN ASN PRO GLN GLU ALA SEQRES 6 A 347 ASP TRP SER GLN GLN THR PHE ASP TYR LEU LEU SER HIS SEQRES 7 A 347 VAL HIS SER PRO ASN ALA GLU ASN LEU GLY LEU PHE LEU SEQRES 8 A 347 ILE SER GLY TYR ASN LEU PHE HIS GLU ALA ILE PRO ASP SEQRES 9 A 347 PRO SER TRP LYS ASP THR VAL LEU GLY PHE ARG LYS LEU SEQRES 10 A 347 THR PRO ARG GLU LEU ASP MET PHE PRO ASP TYR GLY TYR SEQRES 11 A 347 GLY TRP PHE HIS THR SER LEU ILE LEU GLU GLY LYS ASN SEQRES 12 A 347 TYR LEU GLN TRP LEU THR GLU ARG LEU THR GLU ARG GLY SEQRES 13 A 347 VAL LYS PHE PHE GLN ARG LYS VAL GLU SER PHE GLU GLU SEQRES 14 A 347 VAL ALA ARG GLU GLY ALA ASP VAL ILE VAL ASN CYS THR SEQRES 15 A 347 GLY VAL TRP ALA GLY ALA LEU GLN ARG ASP PRO LEU LEU SEQRES 16 A 347 GLN PRO GLY ARG GLY GLN ILE MET LYS VAL ASP ALA PRO SEQRES 17 A 347 TRP MET LYS HIS PHE ILE LEU THR HIS ASP PRO GLU ARG SEQRES 18 A 347 GLY ILE TYR ASN SER PRO TYR ILE ILE PRO GLY THR GLN SEQRES 19 A 347 THR VAL THR LEU GLY GLY ILE PHE GLN LEU GLY ASN TRP SEQRES 20 A 347 SER GLU LEU ASN ASN ILE GLN ASP HIS ASN THR ILE TRP SEQRES 21 A 347 GLU GLY CYS CYS ARG LEU GLU PRO THR LEU LYS ASN ALA SEQRES 22 A 347 ARG ILE ILE GLY GLU ARG THR GLY PHE ARG PRO VAL ARG SEQRES 23 A 347 PRO GLN ILE ARG LEU GLU ARG GLU GLN LEU ARG THR GLY SEQRES 24 A 347 PRO SER ASN THR GLU VAL ILE HIS ASN TYR GLY HIS GLY SEQRES 25 A 347 GLY TYR GLY LEU THR ILE HIS TRP GLY CYS ALA LEU GLU SEQRES 26 A 347 ALA ALA LYS LEU PHE GLY ARG ILE LEU GLU GLU LYS LYS SEQRES 27 A 347 LEU SER ARG MET PRO PRO SER HIS LEU SEQRES 1 B 347 MET ARG VAL VAL VAL ILE GLY ALA GLY VAL ILE GLY LEU SEQRES 2 B 347 SER THR ALA LEU CYS ILE HIS GLU ARG TYR HIS SER VAL SEQRES 3 B 347 LEU GLN PRO LEU ASP ILE LYS VAL TYR ALA ASP ARG PHE SEQRES 4 B 347 THR PRO LEU THR THR THR ASP VAL ALA ALA GLY LEU TRP SEQRES 5 B 347 GLN PRO TYR LEU SER ASP PRO ASN ASN PRO GLN GLU ALA SEQRES 6 B 347 ASP TRP SER GLN GLN THR PHE ASP TYR LEU LEU SER HIS SEQRES 7 B 347 VAL HIS SER PRO ASN ALA GLU ASN LEU GLY LEU PHE LEU SEQRES 8 B 347 ILE SER GLY TYR ASN LEU PHE HIS GLU ALA ILE PRO ASP SEQRES 9 B 347 PRO SER TRP LYS ASP THR VAL LEU GLY PHE ARG LYS LEU SEQRES 10 B 347 THR PRO ARG GLU LEU ASP MET PHE PRO ASP TYR GLY TYR SEQRES 11 B 347 GLY TRP PHE HIS THR SER LEU ILE LEU GLU GLY LYS ASN SEQRES 12 B 347 TYR LEU GLN TRP LEU THR GLU ARG LEU THR GLU ARG GLY SEQRES 13 B 347 VAL LYS PHE PHE GLN ARG LYS VAL GLU SER PHE GLU GLU SEQRES 14 B 347 VAL ALA ARG GLU GLY ALA ASP VAL ILE VAL ASN CYS THR SEQRES 15 B 347 GLY VAL TRP ALA GLY ALA LEU GLN ARG ASP PRO LEU LEU SEQRES 16 B 347 GLN PRO GLY ARG GLY GLN ILE MET LYS VAL ASP ALA PRO SEQRES 17 B 347 TRP MET LYS HIS PHE ILE LEU THR HIS ASP PRO GLU ARG SEQRES 18 B 347 GLY ILE TYR ASN SER PRO TYR ILE ILE PRO GLY THR GLN SEQRES 19 B 347 THR VAL THR LEU GLY GLY ILE PHE GLN LEU GLY ASN TRP SEQRES 20 B 347 SER GLU LEU ASN ASN ILE GLN ASP HIS ASN THR ILE TRP SEQRES 21 B 347 GLU GLY CYS CYS ARG LEU GLU PRO THR LEU LYS ASN ALA SEQRES 22 B 347 ARG ILE ILE GLY GLU ARG THR GLY PHE ARG PRO VAL ARG SEQRES 23 B 347 PRO GLN ILE ARG LEU GLU ARG GLU GLN LEU ARG THR GLY SEQRES 24 B 347 PRO SER ASN THR GLU VAL ILE HIS ASN TYR GLY HIS GLY SEQRES 25 B 347 GLY TYR GLY LEU THR ILE HIS TRP GLY CYS ALA LEU GLU SEQRES 26 B 347 ALA ALA LYS LEU PHE GLY ARG ILE LEU GLU GLU LYS LYS SEQRES 27 B 347 LEU SER ARG MET PRO PRO SER HIS LEU HET FAD A 401 53 HET 31T A 402 28 HET K B 401 1 HET FAD B 402 53 HET 31T B 403 28 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM 31T 4-HYDROXY-6-[2-(7-HYDROXY-2-OXO-4-PHENYL-2H-CHROMEN-6- HETNAM 2 31T YL)ETHYL]PYRIDAZIN-3(2H)-ONE HETNAM K POTASSIUM ION FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 31T 2(C21 H16 N2 O5) FORMUL 5 K K 1+ FORMUL 8 HOH *98(H2 O) HELIX 1 1 GLY A 9 HIS A 24 1 16 HELIX 2 2 THR A 44 ALA A 48 5 5 HELIX 3 3 ASN A 61 VAL A 79 1 19 HELIX 4 4 ASN A 83 GLY A 88 1 6 HELIX 5 5 THR A 118 ASP A 123 1 6 HELIX 6 6 GLU A 140 ARG A 155 1 16 HELIX 7 7 SER A 166 GLU A 173 1 8 HELIX 8 8 THR A 182 LEU A 189 5 8 HELIX 9 9 ASN A 252 GLU A 267 1 16 HELIX 10 10 PRO A 268 ALA A 273 5 6 HELIX 11 11 HIS A 311 GLY A 313 5 3 HELIX 12 12 TYR A 314 LYS A 337 1 24 HELIX 13 13 GLY B 9 HIS B 24 1 16 HELIX 14 14 THR B 44 ALA B 48 5 5 HELIX 15 15 GLN B 63 SER B 77 1 15 HELIX 16 16 ASN B 83 GLY B 88 1 6 HELIX 17 17 THR B 118 ASP B 123 1 6 HELIX 18 18 GLU B 140 ARG B 155 1 16 HELIX 19 19 SER B 166 GLU B 173 1 8 HELIX 20 20 THR B 182 LEU B 189 5 8 HELIX 21 21 ASN B 252 GLU B 267 1 16 HELIX 22 22 PRO B 268 ALA B 273 5 6 HELIX 23 23 HIS B 311 GLY B 313 5 3 HELIX 24 24 TYR B 314 LYS B 337 1 24 SHEET 1 A 6 LYS A 158 GLN A 161 0 SHEET 2 A 6 ASP A 31 ALA A 36 1 N VAL A 34 O LYS A 158 SHEET 3 A 6 ARG A 2 ILE A 6 1 N VAL A 3 O ASP A 31 SHEET 4 A 6 VAL A 177 ASN A 180 1 O VAL A 179 N ILE A 6 SHEET 5 A 6 THR A 303 TYR A 309 1 O GLU A 304 N ILE A 178 SHEET 6 A 6 ARG A 290 LEU A 296 -1 N ARG A 290 O TYR A 309 SHEET 1 B 8 LEU A 112 LYS A 116 0 SHEET 2 B 8 TYR A 130 LEU A 139 -1 O THR A 135 N LEU A 112 SHEET 3 B 8 LEU A 89 PHE A 98 -1 N PHE A 98 O TYR A 130 SHEET 4 B 8 HIS A 212 THR A 216 1 O LEU A 215 N LEU A 97 SHEET 5 B 8 TYR A 228 PRO A 231 -1 O ILE A 229 N ILE A 214 SHEET 6 B 8 VAL A 236 GLY A 239 -1 O THR A 237 N ILE A 230 SHEET 7 B 8 GLN A 196 ASP A 206 -1 N MET A 203 O LEU A 238 SHEET 8 B 8 GLN A 243 LEU A 244 -1 O GLN A 243 N ARG A 199 SHEET 1 C 8 LEU A 112 LYS A 116 0 SHEET 2 C 8 TYR A 130 LEU A 139 -1 O THR A 135 N LEU A 112 SHEET 3 C 8 LEU A 89 PHE A 98 -1 N PHE A 98 O TYR A 130 SHEET 4 C 8 HIS A 212 THR A 216 1 O LEU A 215 N LEU A 97 SHEET 5 C 8 TYR A 228 PRO A 231 -1 O ILE A 229 N ILE A 214 SHEET 6 C 8 VAL A 236 GLY A 239 -1 O THR A 237 N ILE A 230 SHEET 7 C 8 GLN A 196 ASP A 206 -1 N MET A 203 O LEU A 238 SHEET 8 C 8 ARG A 274 VAL A 285 -1 O GLY A 281 N GLY A 200 SHEET 1 D 6 LYS B 158 GLN B 161 0 SHEET 2 D 6 ASP B 31 ALA B 36 1 N VAL B 34 O LYS B 158 SHEET 3 D 6 ARG B 2 ILE B 6 1 N VAL B 3 O ASP B 31 SHEET 4 D 6 VAL B 177 ASN B 180 1 O VAL B 179 N ILE B 6 SHEET 5 D 6 GLU B 304 TYR B 309 1 O ILE B 306 N ASN B 180 SHEET 6 D 6 ARG B 290 GLU B 294 -1 N GLU B 294 O VAL B 305 SHEET 1 E 8 LEU B 112 LYS B 116 0 SHEET 2 E 8 TYR B 130 LEU B 139 -1 O THR B 135 N LEU B 112 SHEET 3 E 8 LEU B 89 PHE B 98 -1 N ILE B 92 O SER B 136 SHEET 4 E 8 HIS B 212 THR B 216 1 O LEU B 215 N LEU B 97 SHEET 5 E 8 TYR B 228 PRO B 231 -1 O ILE B 229 N ILE B 214 SHEET 6 E 8 VAL B 236 GLY B 239 -1 O THR B 237 N ILE B 230 SHEET 7 E 8 GLN B 196 ASP B 206 -1 N MET B 203 O LEU B 238 SHEET 8 E 8 GLN B 243 LEU B 244 -1 O GLN B 243 N ARG B 199 SHEET 1 F 8 LEU B 112 LYS B 116 0 SHEET 2 F 8 TYR B 130 LEU B 139 -1 O THR B 135 N LEU B 112 SHEET 3 F 8 LEU B 89 PHE B 98 -1 N ILE B 92 O SER B 136 SHEET 4 F 8 HIS B 212 THR B 216 1 O LEU B 215 N LEU B 97 SHEET 5 F 8 TYR B 228 PRO B 231 -1 O ILE B 229 N ILE B 214 SHEET 6 F 8 VAL B 236 GLY B 239 -1 O THR B 237 N ILE B 230 SHEET 7 F 8 GLN B 196 ASP B 206 -1 N MET B 203 O LEU B 238 SHEET 8 F 8 ARG B 274 VAL B 285 -1 O ILE B 276 N LYS B 204 LINK O LEU B 122 K K B 401 1555 1555 2.85 LINK O PHE B 125 K K B 401 1555 1555 2.75 LINK O TYR B 128 K K B 401 1555 1555 2.54 CISPEP 1 GLN A 28 PRO A 29 0 -6.88 CISPEP 2 THR A 40 PRO A 41 0 6.35 CISPEP 3 THR B 40 PRO B 41 0 2.37 SITE 1 AC1 36 GLY A 7 ALA A 8 GLY A 9 VAL A 10 SITE 2 AC1 36 ILE A 11 ALA A 36 ASP A 37 ARG A 38 SITE 3 AC1 36 THR A 43 THR A 44 THR A 45 VAL A 47 SITE 4 AC1 36 ALA A 48 GLY A 50 LEU A 51 ARG A 162 SITE 5 AC1 36 LYS A 163 VAL A 164 CYS A 181 THR A 182 SITE 6 AC1 36 GLY A 183 TRP A 185 ILE A 202 ARG A 283 SITE 7 AC1 36 GLY A 312 GLY A 313 TYR A 314 GLY A 315 SITE 8 AC1 36 LEU A 316 THR A 317 31T A 402 HOH A 501 SITE 9 AC1 36 HOH A 504 HOH A 507 HOH A 508 HOH A 538 SITE 1 AC2 13 GLN A 53 TYR A 55 LEU A 56 LEU A 215 SITE 2 AC2 13 TYR A 224 SER A 226 TYR A 228 ILE A 230 SITE 3 AC2 13 GLY A 240 ARG A 283 GLY A 313 FAD A 401 SITE 4 AC2 13 HOH A 557 SITE 1 AC3 3 LEU B 122 PHE B 125 TYR B 128 SITE 1 AC4 36 GLY B 7 ALA B 8 GLY B 9 VAL B 10 SITE 2 AC4 36 ILE B 11 ALA B 36 ASP B 37 ARG B 38 SITE 3 AC4 36 THR B 44 THR B 45 VAL B 47 ALA B 48 SITE 4 AC4 36 GLY B 50 LEU B 51 ARG B 162 LYS B 163 SITE 5 AC4 36 VAL B 164 CYS B 181 THR B 182 GLY B 183 SITE 6 AC4 36 TRP B 185 TYR B 228 GLY B 281 ARG B 283 SITE 7 AC4 36 HIS B 311 GLY B 312 GLY B 313 TYR B 314 SITE 8 AC4 36 GLY B 315 LEU B 316 THR B 317 31T B 403 SITE 9 AC4 36 HOH B 502 HOH B 504 HOH B 505 HOH B 522 SITE 1 AC5 10 LEU B 51 GLN B 53 TYR B 55 LEU B 56 SITE 2 AC5 10 LEU B 215 TYR B 224 TYR B 228 ARG B 283 SITE 3 AC5 10 GLY B 313 FAD B 402 CRYST1 44.390 60.930 258.450 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022528 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003869 0.00000