HEADER HYDROLASE 21-MAY-14 4QFW TITLE CRYSTAL STRUCTURE OF ACYL-COA THIOESTERASE TESB FROM YERSINIA PESTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-COA THIOESTERASE II; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.1.2.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 GENE: TESB, TESB Y1043 YP_0790, Y1043, YPO3141, YP_0790; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3 PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG21 KEYWDS DOUBLE-HOTDOG, 4HBT-LIKE, THIOESTERASE, ACYL-COA THIOESTERASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.M.D.SWARBRICK,J.K.FORWOOD REVDAT 4 20-SEP-23 4QFW 1 SEQADV REVDAT 3 25-OCT-17 4QFW 1 REMARK REVDAT 2 18-JUN-14 4QFW 1 JRNL REVDAT 1 04-JUN-14 4QFW 0 SPRSDE 04-JUN-14 4QFW 4GWH JRNL AUTH C.M.SWARBRICK,E.I.PATTERSON,J.K.FORWOOD JRNL TITL CRYSTALLIZATION OF THE ACYL-COA THIOESTERASE TESB FROM JRNL TITL 2 YERSINIA PESTIS. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 69 188 2013 JRNL REFN ESSN 1744-3091 JRNL PMID 23385765 JRNL DOI 10.1107/S1744309113001267 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 71671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3827 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4926 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 265 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8460 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 207 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.222 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.272 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8684 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 8071 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11761 ; 1.685 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18542 ; 0.875 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1048 ; 6.907 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 448 ;35.366 ;23.571 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1396 ;15.132 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 68 ;17.360 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1225 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9959 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 2147 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4228 ; 2.604 ; 2.812 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4227 ; 2.604 ; 2.811 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5264 ; 3.807 ; 4.197 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5265 ; 3.807 ; 4.198 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4456 ; 2.892 ; 3.121 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4457 ; 2.892 ; 3.122 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6498 ; 4.373 ; 4.561 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9549 ; 6.184 ;22.541 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 9481 ; 6.188 ;22.539 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4QFW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000086003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SILICON DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75550 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 54.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.21100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1C8U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 235MM SODIUM MALONATE, PH REMARK 280 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 85.81000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CONFIRMED USING SIZE EXCLUSION CHROMATOGRAPHY, ANALYTICAL REMARK 300 ULTRACENTRIFUGATION AND SMALL ANGLE X-RAY SCATTERING THE TETRAMER REMARK 300 PRESENT IN THE ASYMMETRIC UNIT IS THE BIOLOGICAL ASSEMBLY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 ASP A 28 REMARK 465 LEU A 29 REMARK 465 GLY A 30 REMARK 465 LEU A 31 REMARK 465 ARG A 32 REMARK 465 PHE A 140 REMARK 465 SER A 141 REMARK 465 HIS A 142 REMARK 465 LEU A 143 REMARK 465 ILE A 144 REMARK 465 PRO A 145 REMARK 465 GLU A 146 REMARK 465 LYS A 147 REMARK 465 VAL A 148 REMARK 465 ARG A 149 REMARK 465 GLU A 150 REMARK 465 LYS A 151 REMARK 465 PHE A 152 REMARK 465 ILE A 153 REMARK 465 ARG A 286 REMARK 465 SER A 287 REMARK 465 ASN A 288 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLN B 3 REMARK 465 ASP B 28 REMARK 465 LEU B 29 REMARK 465 GLY B 30 REMARK 465 LEU B 31 REMARK 465 ARG B 32 REMARK 465 HIS B 142 REMARK 465 LEU B 143 REMARK 465 ILE B 144 REMARK 465 PRO B 145 REMARK 465 GLU B 146 REMARK 465 LYS B 147 REMARK 465 VAL B 148 REMARK 465 ARG B 149 REMARK 465 GLU B 150 REMARK 465 LYS B 151 REMARK 465 PHE B 152 REMARK 465 ILE B 153 REMARK 465 ARG B 286 REMARK 465 SER B 287 REMARK 465 ASN B 288 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 GLN C 3 REMARK 465 ASP C 28 REMARK 465 LEU C 29 REMARK 465 GLY C 30 REMARK 465 LEU C 31 REMARK 465 ARG C 32 REMARK 465 LEU C 143 REMARK 465 ILE C 144 REMARK 465 PRO C 145 REMARK 465 GLU C 146 REMARK 465 LYS C 147 REMARK 465 VAL C 148 REMARK 465 ARG C 149 REMARK 465 GLU C 150 REMARK 465 ARG C 286 REMARK 465 SER C 287 REMARK 465 ASN C 288 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 GLN D 3 REMARK 465 ASP D 28 REMARK 465 LEU D 29 REMARK 465 GLY D 30 REMARK 465 LEU D 31 REMARK 465 ARG D 32 REMARK 465 PHE D 140 REMARK 465 SER D 141 REMARK 465 HIS D 142 REMARK 465 LEU D 143 REMARK 465 ILE D 144 REMARK 465 PRO D 145 REMARK 465 GLU D 146 REMARK 465 LYS D 147 REMARK 465 VAL D 148 REMARK 465 ARG D 149 REMARK 465 GLU D 150 REMARK 465 LYS D 151 REMARK 465 PHE D 152 REMARK 465 ILE D 153 REMARK 465 ARG D 286 REMARK 465 SER D 287 REMARK 465 ASN D 288 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 23 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 102 139.16 -173.21 REMARK 500 ASP A 190 21.11 -78.27 REMARK 500 PHE A 207 -86.93 -114.80 REMARK 500 SER B 86 -32.20 -131.57 REMARK 500 ASN B 119 -167.59 -77.86 REMARK 500 GLN B 170 -111.80 -139.46 REMARK 500 PHE B 207 -86.35 -122.48 REMARK 500 PHE C 102 139.94 -170.98 REMARK 500 ASN C 119 -167.58 -69.13 REMARK 500 GLN C 139 -19.17 88.20 REMARK 500 PHE C 207 -87.64 -115.78 REMARK 500 PHE D 102 145.25 -170.17 REMARK 500 GLN D 170 -100.33 -124.68 REMARK 500 PHE D 207 -88.55 -121.93 REMARK 500 REMARK 500 REMARK: NULL DBREF 4QFW A 1 286 UNP Q0WCE2 Q0WCE2_YERPE 1 286 DBREF 4QFW B 1 286 UNP Q0WCE2 Q0WCE2_YERPE 1 286 DBREF 4QFW C 1 286 UNP Q0WCE2 Q0WCE2_YERPE 1 286 DBREF 4QFW D 1 286 UNP Q0WCE2 Q0WCE2_YERPE 1 286 SEQADV 4QFW SER A 287 UNP Q0WCE2 EXPRESSION TAG SEQADV 4QFW ASN A 288 UNP Q0WCE2 EXPRESSION TAG SEQADV 4QFW SER B 287 UNP Q0WCE2 EXPRESSION TAG SEQADV 4QFW ASN B 288 UNP Q0WCE2 EXPRESSION TAG SEQADV 4QFW SER C 287 UNP Q0WCE2 EXPRESSION TAG SEQADV 4QFW ASN C 288 UNP Q0WCE2 EXPRESSION TAG SEQADV 4QFW SER D 287 UNP Q0WCE2 EXPRESSION TAG SEQADV 4QFW ASN D 288 UNP Q0WCE2 EXPRESSION TAG SEQRES 1 A 288 MET SER GLN ALA LEU GLU LYS LEU LEU ASP LEU LEU ASP SEQRES 2 A 288 LEU GLU LYS ILE GLU GLU GLY ILE PHE ARG GLY GLN SER SEQRES 3 A 288 GLU ASP LEU GLY LEU ARG GLN VAL PHE GLY GLY GLN VAL SEQRES 4 A 288 VAL GLY GLN ALA ILE TYR ALA ALA LYS GLN THR VAL PRO SEQRES 5 A 288 ALA GLU ARG THR VAL HIS SER PHE HIS SER TYR PHE LEU SEQRES 6 A 288 ARG PRO GLY ASP SER SER LYS PRO ILE ILE TYR ASP VAL SEQRES 7 A 288 GLU THR LEU ARG ASP GLY ASN SER PHE SER ALA ARG ARG SEQRES 8 A 288 VAL SER ALA ILE GLN ASN GLY LYS PRO ILE PHE TYR MET SEQRES 9 A 288 THR ALA SER PHE GLN SER GLN GLU GLU GLY PHE GLU HIS SEQRES 10 A 288 GLN ASN THR MET PRO ASP VAL PRO PRO PRO GLU GLY LEU SEQRES 11 A 288 MET SER GLU THR ASP ILE ALA ARG GLN PHE SER HIS LEU SEQRES 12 A 288 ILE PRO GLU LYS VAL ARG GLU LYS PHE ILE GLY PRO GLN SEQRES 13 A 288 PRO ILE GLU MET ARG PRO VAL LYS PHE HIS ASN PRO LEU SEQRES 14 A 288 GLN GLY SER VAL GLU GLU PRO ASN ARG TYR VAL TRP PHE SEQRES 15 A 288 ARG ALA ASN GLY LYS MET PRO ASP ASP LEU ARG VAL HIS SEQRES 16 A 288 GLN TYR LEU LEU GLY TYR ALA SER ASP PHE ASN PHE LEU SEQRES 17 A 288 PRO THR ALA LEU GLN PRO HIS GLY ILE GLY PHE LEU GLU SEQRES 18 A 288 PRO GLY MET GLN ILE ALA THR ILE ASP HIS SER MET TRP SEQRES 19 A 288 PHE HIS ARG PRO PHE ARG LEU ASP ASP TRP LEU LEU TYR SEQRES 20 A 288 ALA VAL GLU SER THR SER ALA SER GLY ALA ARG GLY PHE SEQRES 21 A 288 VAL ARG GLY GLN ILE TYR ASN ARG GLU GLY VAL LEU VAL SEQRES 22 A 288 ALA SER THR VAL GLN GLU GLY VAL ILE ARG LEU HIS ARG SEQRES 23 A 288 SER ASN SEQRES 1 B 288 MET SER GLN ALA LEU GLU LYS LEU LEU ASP LEU LEU ASP SEQRES 2 B 288 LEU GLU LYS ILE GLU GLU GLY ILE PHE ARG GLY GLN SER SEQRES 3 B 288 GLU ASP LEU GLY LEU ARG GLN VAL PHE GLY GLY GLN VAL SEQRES 4 B 288 VAL GLY GLN ALA ILE TYR ALA ALA LYS GLN THR VAL PRO SEQRES 5 B 288 ALA GLU ARG THR VAL HIS SER PHE HIS SER TYR PHE LEU SEQRES 6 B 288 ARG PRO GLY ASP SER SER LYS PRO ILE ILE TYR ASP VAL SEQRES 7 B 288 GLU THR LEU ARG ASP GLY ASN SER PHE SER ALA ARG ARG SEQRES 8 B 288 VAL SER ALA ILE GLN ASN GLY LYS PRO ILE PHE TYR MET SEQRES 9 B 288 THR ALA SER PHE GLN SER GLN GLU GLU GLY PHE GLU HIS SEQRES 10 B 288 GLN ASN THR MET PRO ASP VAL PRO PRO PRO GLU GLY LEU SEQRES 11 B 288 MET SER GLU THR ASP ILE ALA ARG GLN PHE SER HIS LEU SEQRES 12 B 288 ILE PRO GLU LYS VAL ARG GLU LYS PHE ILE GLY PRO GLN SEQRES 13 B 288 PRO ILE GLU MET ARG PRO VAL LYS PHE HIS ASN PRO LEU SEQRES 14 B 288 GLN GLY SER VAL GLU GLU PRO ASN ARG TYR VAL TRP PHE SEQRES 15 B 288 ARG ALA ASN GLY LYS MET PRO ASP ASP LEU ARG VAL HIS SEQRES 16 B 288 GLN TYR LEU LEU GLY TYR ALA SER ASP PHE ASN PHE LEU SEQRES 17 B 288 PRO THR ALA LEU GLN PRO HIS GLY ILE GLY PHE LEU GLU SEQRES 18 B 288 PRO GLY MET GLN ILE ALA THR ILE ASP HIS SER MET TRP SEQRES 19 B 288 PHE HIS ARG PRO PHE ARG LEU ASP ASP TRP LEU LEU TYR SEQRES 20 B 288 ALA VAL GLU SER THR SER ALA SER GLY ALA ARG GLY PHE SEQRES 21 B 288 VAL ARG GLY GLN ILE TYR ASN ARG GLU GLY VAL LEU VAL SEQRES 22 B 288 ALA SER THR VAL GLN GLU GLY VAL ILE ARG LEU HIS ARG SEQRES 23 B 288 SER ASN SEQRES 1 C 288 MET SER GLN ALA LEU GLU LYS LEU LEU ASP LEU LEU ASP SEQRES 2 C 288 LEU GLU LYS ILE GLU GLU GLY ILE PHE ARG GLY GLN SER SEQRES 3 C 288 GLU ASP LEU GLY LEU ARG GLN VAL PHE GLY GLY GLN VAL SEQRES 4 C 288 VAL GLY GLN ALA ILE TYR ALA ALA LYS GLN THR VAL PRO SEQRES 5 C 288 ALA GLU ARG THR VAL HIS SER PHE HIS SER TYR PHE LEU SEQRES 6 C 288 ARG PRO GLY ASP SER SER LYS PRO ILE ILE TYR ASP VAL SEQRES 7 C 288 GLU THR LEU ARG ASP GLY ASN SER PHE SER ALA ARG ARG SEQRES 8 C 288 VAL SER ALA ILE GLN ASN GLY LYS PRO ILE PHE TYR MET SEQRES 9 C 288 THR ALA SER PHE GLN SER GLN GLU GLU GLY PHE GLU HIS SEQRES 10 C 288 GLN ASN THR MET PRO ASP VAL PRO PRO PRO GLU GLY LEU SEQRES 11 C 288 MET SER GLU THR ASP ILE ALA ARG GLN PHE SER HIS LEU SEQRES 12 C 288 ILE PRO GLU LYS VAL ARG GLU LYS PHE ILE GLY PRO GLN SEQRES 13 C 288 PRO ILE GLU MET ARG PRO VAL LYS PHE HIS ASN PRO LEU SEQRES 14 C 288 GLN GLY SER VAL GLU GLU PRO ASN ARG TYR VAL TRP PHE SEQRES 15 C 288 ARG ALA ASN GLY LYS MET PRO ASP ASP LEU ARG VAL HIS SEQRES 16 C 288 GLN TYR LEU LEU GLY TYR ALA SER ASP PHE ASN PHE LEU SEQRES 17 C 288 PRO THR ALA LEU GLN PRO HIS GLY ILE GLY PHE LEU GLU SEQRES 18 C 288 PRO GLY MET GLN ILE ALA THR ILE ASP HIS SER MET TRP SEQRES 19 C 288 PHE HIS ARG PRO PHE ARG LEU ASP ASP TRP LEU LEU TYR SEQRES 20 C 288 ALA VAL GLU SER THR SER ALA SER GLY ALA ARG GLY PHE SEQRES 21 C 288 VAL ARG GLY GLN ILE TYR ASN ARG GLU GLY VAL LEU VAL SEQRES 22 C 288 ALA SER THR VAL GLN GLU GLY VAL ILE ARG LEU HIS ARG SEQRES 23 C 288 SER ASN SEQRES 1 D 288 MET SER GLN ALA LEU GLU LYS LEU LEU ASP LEU LEU ASP SEQRES 2 D 288 LEU GLU LYS ILE GLU GLU GLY ILE PHE ARG GLY GLN SER SEQRES 3 D 288 GLU ASP LEU GLY LEU ARG GLN VAL PHE GLY GLY GLN VAL SEQRES 4 D 288 VAL GLY GLN ALA ILE TYR ALA ALA LYS GLN THR VAL PRO SEQRES 5 D 288 ALA GLU ARG THR VAL HIS SER PHE HIS SER TYR PHE LEU SEQRES 6 D 288 ARG PRO GLY ASP SER SER LYS PRO ILE ILE TYR ASP VAL SEQRES 7 D 288 GLU THR LEU ARG ASP GLY ASN SER PHE SER ALA ARG ARG SEQRES 8 D 288 VAL SER ALA ILE GLN ASN GLY LYS PRO ILE PHE TYR MET SEQRES 9 D 288 THR ALA SER PHE GLN SER GLN GLU GLU GLY PHE GLU HIS SEQRES 10 D 288 GLN ASN THR MET PRO ASP VAL PRO PRO PRO GLU GLY LEU SEQRES 11 D 288 MET SER GLU THR ASP ILE ALA ARG GLN PHE SER HIS LEU SEQRES 12 D 288 ILE PRO GLU LYS VAL ARG GLU LYS PHE ILE GLY PRO GLN SEQRES 13 D 288 PRO ILE GLU MET ARG PRO VAL LYS PHE HIS ASN PRO LEU SEQRES 14 D 288 GLN GLY SER VAL GLU GLU PRO ASN ARG TYR VAL TRP PHE SEQRES 15 D 288 ARG ALA ASN GLY LYS MET PRO ASP ASP LEU ARG VAL HIS SEQRES 16 D 288 GLN TYR LEU LEU GLY TYR ALA SER ASP PHE ASN PHE LEU SEQRES 17 D 288 PRO THR ALA LEU GLN PRO HIS GLY ILE GLY PHE LEU GLU SEQRES 18 D 288 PRO GLY MET GLN ILE ALA THR ILE ASP HIS SER MET TRP SEQRES 19 D 288 PHE HIS ARG PRO PHE ARG LEU ASP ASP TRP LEU LEU TYR SEQRES 20 D 288 ALA VAL GLU SER THR SER ALA SER GLY ALA ARG GLY PHE SEQRES 21 D 288 VAL ARG GLY GLN ILE TYR ASN ARG GLU GLY VAL LEU VAL SEQRES 22 D 288 ALA SER THR VAL GLN GLU GLY VAL ILE ARG LEU HIS ARG SEQRES 23 D 288 SER ASN FORMUL 5 HOH *207(H2 O) HELIX 1 1 ALA A 4 ASP A 13 1 10 HELIX 2 2 PHE A 35 THR A 50 1 16 HELIX 3 3 SER A 132 ALA A 137 1 6 HELIX 4 4 ASP A 191 ASP A 204 1 14 HELIX 5 5 PHE A 207 GLY A 216 5 10 HELIX 6 6 LEU B 5 LEU B 12 1 8 HELIX 7 7 PHE B 35 THR B 50 1 16 HELIX 8 8 SER B 132 GLN B 139 1 8 HELIX 9 9 ASP B 191 SER B 203 1 13 HELIX 10 10 PHE B 207 GLY B 216 5 10 HELIX 11 11 LEU C 5 ASP C 13 1 9 HELIX 12 12 PHE C 35 THR C 50 1 16 HELIX 13 13 PRO C 126 LEU C 130 5 5 HELIX 14 14 SER C 132 ARG C 138 1 7 HELIX 15 15 ASP C 191 SER C 203 1 13 HELIX 16 16 PHE C 207 GLY C 216 5 10 HELIX 17 17 LEU D 5 ASP D 10 1 6 HELIX 18 18 GLY D 36 THR D 50 1 15 HELIX 19 19 PRO D 126 LEU D 130 5 5 HELIX 20 20 SER D 132 GLN D 139 1 8 HELIX 21 21 ASP D 191 SER D 203 1 13 HELIX 22 22 PHE D 207 GLY D 216 5 10 SHEET 1 A12 GLU A 15 GLU A 18 0 SHEET 2 A12 ILE A 21 GLY A 24 -1 O ILE A 21 N ILE A 17 SHEET 3 A12 ILE A 74 ASP A 83 -1 O ILE A 74 N GLY A 24 SHEET 4 A12 PHE A 87 GLN A 96 -1 O ILE A 95 N ILE A 75 SHEET 5 A12 LYS A 99 SER A 110 -1 O MET A 104 N VAL A 92 SHEET 6 A12 ARG A 55 PHE A 64 -1 N HIS A 58 O SER A 107 SHEET 7 A12 MET A 224 PHE A 235 -1 O ILE A 229 N PHE A 64 SHEET 8 A12 LEU A 272 LEU A 284 -1 O ARG A 283 N GLN A 225 SHEET 9 A12 ARG A 258 ASN A 267 -1 N ILE A 265 O ALA A 274 SHEET 10 A12 LEU A 245 SER A 255 -1 N LEU A 246 O TYR A 266 SHEET 11 A12 ASN A 177 ALA A 184 -1 N VAL A 180 O TYR A 247 SHEET 12 A12 ILE A 158 PRO A 162 -1 N ARG A 161 O TRP A 181 SHEET 1 B11 GLU A 15 GLU A 18 0 SHEET 2 B11 ILE A 21 GLY A 24 -1 O ILE A 21 N ILE A 17 SHEET 3 B11 ILE A 74 ASP A 83 -1 O ILE A 74 N GLY A 24 SHEET 4 B11 PHE A 87 GLN A 96 -1 O ILE A 95 N ILE A 75 SHEET 5 B11 LYS A 99 SER A 110 -1 O MET A 104 N VAL A 92 SHEET 6 B11 ARG A 55 PHE A 64 -1 N HIS A 58 O SER A 107 SHEET 7 B11 MET A 224 PHE A 235 -1 O ILE A 229 N PHE A 64 SHEET 8 B11 LEU A 272 LEU A 284 -1 O ARG A 283 N GLN A 225 SHEET 9 B11 ARG A 258 ASN A 267 -1 N ILE A 265 O ALA A 274 SHEET 10 B11 LEU A 245 SER A 255 -1 N LEU A 246 O TYR A 266 SHEET 11 B11 HIS B 117 GLN B 118 -1 O HIS B 117 N ALA A 254 SHEET 1 C11 HIS A 117 GLN A 118 0 SHEET 2 C11 LEU B 245 SER B 255 -1 O ALA B 254 N HIS A 117 SHEET 3 C11 ARG B 258 ASN B 267 -1 O TYR B 266 N LEU B 246 SHEET 4 C11 LEU B 272 LEU B 284 -1 O GLN B 278 N VAL B 261 SHEET 5 C11 MET B 224 PHE B 235 -1 N GLN B 225 O ARG B 283 SHEET 6 C11 ARG B 55 PHE B 64 -1 N PHE B 64 O ILE B 229 SHEET 7 C11 LYS B 99 SER B 110 -1 O SER B 107 N HIS B 58 SHEET 8 C11 PHE B 87 GLN B 96 -1 N ALA B 94 O ILE B 101 SHEET 9 C11 ILE B 74 ASP B 83 -1 N GLU B 79 O ARG B 91 SHEET 10 C11 ILE B 21 GLY B 24 -1 N GLY B 24 O ILE B 74 SHEET 11 C11 GLU B 15 GLU B 18 -1 N GLU B 15 O ARG B 23 SHEET 1 D 4 HIS A 117 GLN A 118 0 SHEET 2 D 4 LEU B 245 SER B 255 -1 O ALA B 254 N HIS A 117 SHEET 3 D 4 ASN B 177 ALA B 184 -1 N VAL B 180 O TYR B 247 SHEET 4 D 4 ILE B 158 PRO B 162 -1 N ARG B 161 O TRP B 181 SHEET 1 E12 GLU C 15 GLU C 18 0 SHEET 2 E12 ILE C 21 GLY C 24 -1 O ILE C 21 N ILE C 17 SHEET 3 E12 ILE C 74 ASP C 83 -1 O TYR C 76 N PHE C 22 SHEET 4 E12 PHE C 87 GLN C 96 -1 O ILE C 95 N ILE C 75 SHEET 5 E12 LYS C 99 SER C 110 -1 O MET C 104 N VAL C 92 SHEET 6 E12 ARG C 55 PHE C 64 -1 N HIS C 61 O THR C 105 SHEET 7 E12 MET C 224 PHE C 235 -1 O ILE C 229 N PHE C 64 SHEET 8 E12 LEU C 272 LEU C 284 -1 O ARG C 283 N GLN C 225 SHEET 9 E12 ARG C 258 ASN C 267 -1 N ILE C 265 O ALA C 274 SHEET 10 E12 LEU C 245 SER C 255 -1 N LEU C 246 O TYR C 266 SHEET 11 E12 ASN C 177 ALA C 184 -1 N ARG C 178 O VAL C 249 SHEET 12 E12 ILE C 158 PRO C 162 -1 N GLU C 159 O ARG C 183 SHEET 1 F11 GLU C 15 GLU C 18 0 SHEET 2 F11 ILE C 21 GLY C 24 -1 O ILE C 21 N ILE C 17 SHEET 3 F11 ILE C 74 ASP C 83 -1 O TYR C 76 N PHE C 22 SHEET 4 F11 PHE C 87 GLN C 96 -1 O ILE C 95 N ILE C 75 SHEET 5 F11 LYS C 99 SER C 110 -1 O MET C 104 N VAL C 92 SHEET 6 F11 ARG C 55 PHE C 64 -1 N HIS C 61 O THR C 105 SHEET 7 F11 MET C 224 PHE C 235 -1 O ILE C 229 N PHE C 64 SHEET 8 F11 LEU C 272 LEU C 284 -1 O ARG C 283 N GLN C 225 SHEET 9 F11 ARG C 258 ASN C 267 -1 N ILE C 265 O ALA C 274 SHEET 10 F11 LEU C 245 SER C 255 -1 N LEU C 246 O TYR C 266 SHEET 11 F11 HIS D 117 GLN D 118 -1 O HIS D 117 N ALA C 254 SHEET 1 G11 HIS C 117 GLN C 118 0 SHEET 2 G11 LEU D 245 SER D 255 -1 O ALA D 254 N HIS C 117 SHEET 3 G11 ARG D 258 ASN D 267 -1 O TYR D 266 N LEU D 246 SHEET 4 G11 LEU D 272 LEU D 284 -1 O ALA D 274 N ILE D 265 SHEET 5 G11 MET D 224 PHE D 235 -1 N GLN D 225 O ARG D 283 SHEET 6 G11 ARG D 55 PHE D 64 -1 N PHE D 64 O ILE D 229 SHEET 7 G11 LYS D 99 SER D 110 -1 O SER D 107 N SER D 59 SHEET 8 G11 PHE D 87 GLN D 96 -1 N VAL D 92 O MET D 104 SHEET 9 G11 ILE D 74 ASP D 83 -1 N ILE D 75 O ILE D 95 SHEET 10 G11 ILE D 21 GLY D 24 -1 N PHE D 22 O TYR D 76 SHEET 11 G11 GLU D 15 GLU D 18 -1 N GLU D 15 O ARG D 23 SHEET 1 H 4 HIS C 117 GLN C 118 0 SHEET 2 H 4 LEU D 245 SER D 255 -1 O ALA D 254 N HIS C 117 SHEET 3 H 4 ASN D 177 ALA D 184 -1 N ARG D 178 O VAL D 249 SHEET 4 H 4 ILE D 158 PRO D 162 -1 N ARG D 161 O TRP D 181 CRYST1 51.230 171.620 73.700 90.00 109.62 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019520 0.000000 0.006958 0.00000 SCALE2 0.000000 0.005827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014405 0.00000