HEADER RIBOSOMAL PROTEIN/RNA 22-MAY-14 4QG3 TITLE CRYSTAL STRUCTURE OF MUTANT RIBOSOMAL PROTEIN G219V TTHL1 IN COMPLEX TITLE 2 WITH 80NT 23S RNA FROM THERMUS THERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FRAGMENT OF 23S RRNA; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: 80 NT FRAGMENT OF 23S RRNA; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 GENE: RPLA, RPL1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL11(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET11A-PL; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A-PL/TTHL1 G219V; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 12 ORGANISM_TAXID: 274; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PUC18; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PUC18/RRNATTH KEYWDS ROSSMANN FOLD, RIBOSOMAL PROTEIN, RRNA, RRNA BINDING, RIBOSOME, KEYWDS 2 RIBOSOMAL PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.G.GABDULKHAKOV,N.A.NEVSKAYA,S.V.NIKONOV REVDAT 3 20-SEP-23 4QG3 1 REMARK SEQADV REVDAT 2 25-FEB-15 4QG3 1 JRNL REVDAT 1 11-FEB-15 4QG3 0 JRNL AUTH S.TISHCHENKO,O.KOSTAREVA,A.GABDULKHAKOV,A.MIKHAYLINA, JRNL AUTH 2 E.NIKONOVA,N.NEVSKAYA,A.SARSKIKH,W.PIENDL,M.GARBER,S.NIKONOV JRNL TITL PROTEIN-RNA AFFINITY OF RIBOSOMAL PROTEIN L1 MUTANTS DOES JRNL TITL 2 NOT CORRELATE WITH THE NUMBER OF INTERMOLECULAR JRNL TITL 3 INTERACTIONS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 376 2015 JRNL REFN ISSN 0907-4449 JRNL PMID 25664749 JRNL DOI 10.1107/S1399004714026248 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1690) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 31564 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 1506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.9830 - 4.4383 0.98 2995 150 0.1625 0.1973 REMARK 3 2 4.4383 - 3.5269 0.99 2915 131 0.1450 0.1448 REMARK 3 3 3.5269 - 3.0823 0.99 2884 128 0.1822 0.1978 REMARK 3 4 3.0823 - 2.8010 0.98 2784 184 0.2354 0.2414 REMARK 3 5 2.8010 - 2.6005 0.96 2776 112 0.2516 0.2975 REMARK 3 6 2.6005 - 2.4474 0.92 2633 128 0.2101 0.2365 REMARK 3 7 2.4474 - 2.3249 0.92 2619 126 0.2067 0.2340 REMARK 3 8 2.3249 - 2.2238 0.92 2606 124 0.2167 0.2645 REMARK 3 9 2.2238 - 2.1383 0.93 2628 142 0.2380 0.2702 REMARK 3 10 2.1383 - 2.0645 0.93 2581 148 0.2632 0.3210 REMARK 3 11 2.0645 - 2.0000 0.92 2637 133 0.2869 0.3268 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3783 REMARK 3 ANGLE : 1.247 5501 REMARK 3 CHIRALITY : 0.052 671 REMARK 3 PLANARITY : 0.007 400 REMARK 3 DIHEDRAL : 13.842 1652 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QG3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000086010. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MONTEL 200 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS PLUS REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33152 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3U4M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULFATE, 0.05 M BIS REMARK 280 -TRIS,PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.38650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.12700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.24450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.12700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.38650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.24450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G B2110 O5' - P - OP2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 36 45.27 -88.57 REMARK 500 MET A 108 18.18 -142.34 REMARK 500 PRO A 133 26.77 -66.61 REMARK 500 ALA A 158 27.04 -77.02 REMARK 500 PRO A 220 -179.86 -64.79 REMARK 500 HIS A 227 55.13 -104.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 2204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 2205 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 2206 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE URE B 2207 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 2208 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U63 RELATED DB: PDB REMARK 900 THE STRUCTURE OF A RIBOSOMAL PROTEIN L1-MRNA COMPLEX REMARK 900 RELATED ID: 3U4M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN TTHL1 IN COMPLEX WITH 80NT REMARK 900 23S RNA FROM THERMUS THERMOPHILUS REMARK 900 RELATED ID: 3U42 RELATED DB: PDB REMARK 900 MUTANT RIBOSOMAL PROTEIN L1 FROM THERMUS THERMOPHILUS WITH REMARK 900 THREONINE 217 REPLACED BY VALINE REMARK 900 RELATED ID: 3U56 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MUTANT RIBOSOMAL PROTEIN T217V TTHL1 IN REMARK 900 COMPLEX WITH 80NT 23S RNA FROM THERMUS THERMOPHILUS REMARK 900 RELATED ID: 3UMY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MUTANT RIBOSOMAL PROTEIN T217A TTHL1 IN REMARK 900 COMPLEX WITH 80NT 23S RNA FROM THERMUS THERMOPHILUS REMARK 900 RELATED ID: 4QGB RELATED DB: PDB DBREF 4QG3 A 1 228 UNP P27150 RL1_THETH 2 229 DBREF 4QG3 B 2105 2184 PDB 4QG3 4QG3 2105 2184 SEQADV 4QG3 VAL A 219 UNP P27150 GLY 220 ENGINEERED MUTATION SEQRES 1 A 228 PRO LYS HIS GLY LYS ARG TYR ARG ALA LEU LEU GLU LYS SEQRES 2 A 228 VAL ASP PRO ASN LYS ILE TYR THR ILE ASP GLU ALA ALA SEQRES 3 A 228 HIS LEU VAL LYS GLU LEU ALA THR ALA LYS PHE ASP GLU SEQRES 4 A 228 THR VAL GLU VAL HIS ALA LYS LEU GLY ILE ASP PRO ARG SEQRES 5 A 228 ARG SER ASP GLN ASN VAL ARG GLY THR VAL SER LEU PRO SEQRES 6 A 228 HIS GLY LEU GLY LYS GLN VAL ARG VAL LEU ALA ILE ALA SEQRES 7 A 228 LYS GLY GLU LYS ILE LYS GLU ALA GLU GLU ALA GLY ALA SEQRES 8 A 228 ASP TYR VAL GLY GLY GLU GLU ILE ILE GLN LYS ILE LEU SEQRES 9 A 228 ASP GLY TRP MET ASP PHE ASP ALA VAL VAL ALA THR PRO SEQRES 10 A 228 ASP VAL MET GLY ALA VAL GLY SER LYS LEU GLY ARG ILE SEQRES 11 A 228 LEU GLY PRO ARG GLY LEU LEU PRO ASN PRO LYS ALA GLY SEQRES 12 A 228 THR VAL GLY PHE ASN ILE GLY GLU ILE ILE ARG GLU ILE SEQRES 13 A 228 LYS ALA GLY ARG ILE GLU PHE ARG ASN ASP LYS THR GLY SEQRES 14 A 228 ALA ILE HIS ALA PRO VAL GLY LYS ALA SER PHE PRO PRO SEQRES 15 A 228 GLU LYS LEU ALA ASP ASN ILE ARG ALA PHE ILE ARG ALA SEQRES 16 A 228 LEU GLU ALA HIS LYS PRO GLU GLY ALA LYS GLY THR PHE SEQRES 17 A 228 LEU ARG SER VAL TYR VAL THR THR THR MET VAL PRO SER SEQRES 18 A 228 VAL ARG ILE ASN PRO HIS SER SEQRES 1 B 80 G G G A U G C G U A G G A SEQRES 2 B 80 U A G G U G G G A G C C U SEQRES 3 B 80 G U G A A C C C C C G C C SEQRES 4 B 80 U C C G G G U G G G G G G SEQRES 5 B 80 G A G G C G C C G G U G A SEQRES 6 B 80 A A U A C C A C C C U U C SEQRES 7 B 80 C C HET SO4 A 301 5 HET SO4 A 302 5 HET IPA A 303 4 HET IPA A 304 4 HET IPA A 305 4 HET IPA A 306 4 HET IPA A 307 4 HET IPA A 308 4 HET IPA A 309 4 HET BME A 310 4 HET SO4 B2201 5 HET SO4 B2202 5 HET SO4 B2203 5 HET BME B2204 4 HET BME B2205 4 HET IPA B2206 4 HET URE B2207 4 HET BME B2208 4 HETNAM SO4 SULFATE ION HETNAM IPA ISOPROPYL ALCOHOL HETNAM BME BETA-MERCAPTOETHANOL HETNAM URE UREA HETSYN IPA 2-PROPANOL FORMUL 3 SO4 5(O4 S 2-) FORMUL 5 IPA 8(C3 H8 O) FORMUL 12 BME 4(C2 H6 O S) FORMUL 19 URE C H4 N2 O FORMUL 21 HOH *261(H2 O) HELIX 1 1 GLY A 4 GLU A 12 1 9 HELIX 2 2 THR A 21 ALA A 33 1 13 HELIX 3 3 ARG A 53 ASN A 57 5 5 HELIX 4 4 GLU A 81 ALA A 89 1 9 HELIX 5 5 GLY A 96 ASP A 105 1 10 HELIX 6 6 VAL A 119 GLY A 132 1 14 HELIX 7 7 PRO A 133 GLY A 135 5 3 HELIX 8 8 ASN A 148 ALA A 158 1 11 HELIX 9 9 PRO A 181 HIS A 199 1 19 SHEET 1 A 4 ALA A 170 LYS A 177 0 SHEET 2 A 4 THR A 40 LEU A 47 -1 N VAL A 41 O VAL A 175 SHEET 3 A 4 LEU A 209 THR A 216 -1 O THR A 215 N GLU A 42 SHEET 4 A 4 SER A 221 ARG A 223 -1 O VAL A 222 N VAL A 214 SHEET 1 B 2 ARG A 59 SER A 63 0 SHEET 2 B 2 ARG A 160 ARG A 164 -1 O PHE A 163 N GLY A 60 SHEET 1 C 3 TYR A 93 GLY A 95 0 SHEET 2 C 3 VAL A 74 ILE A 77 1 N ALA A 76 O TYR A 93 SHEET 3 C 3 ALA A 112 ALA A 115 1 O ALA A 112 N LEU A 75 SITE 1 AC1 8 PRO A 1 LYS A 2 HIS A 3 ARG A 8 SITE 2 AC1 8 ARG A 52 ARG A 53 SER A 54 HOH A 483 SITE 1 AC2 3 LYS A 46 ARG A 210 HOH A 466 SITE 1 AC3 2 LYS A 205 GLY A 206 SITE 1 AC4 1 SER A 63 SITE 1 AC5 9 GLY A 95 GLY A 96 GLU A 97 GLU A 98 SITE 2 AC5 9 ILE A 99 ASN A 225 HOH A 430 HOH A 463 SITE 3 AC5 9 HOH B2430 SITE 1 AC6 4 GLY A 60 THR A 61 LYS A 141 HIS A 199 SITE 1 AC7 2 LYS A 205 ARG A 210 SITE 1 AC8 2 GLN A 71 LYS A 157 SITE 1 AC9 1 PRO A 65 SITE 1 BC1 4 GLU A 85 GLY A 150 GLU A 151 ARG A 154 SITE 1 BC2 3 C B2128 C B2129 HOH B2415 SITE 1 BC3 4 G B2112 HOH B2318 HOH B2425 HOH B2427 SITE 1 BC4 1 C B2161 SITE 1 BC5 3 C B2178 C B2179 HOH B2381 SITE 1 BC6 5 C B2174 C B2175 A B2176 HOH B2375 SITE 2 BC6 5 HOH B2382 SITE 1 BC7 2 G B2110 U B2180 SITE 1 BC8 5 C B2138 C B2139 HOH B2333 HOH B2392 SITE 2 BC8 5 HOH B2470 SITE 1 BC9 2 G B2133 G B2157 CRYST1 72.773 76.489 86.254 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013741 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013074 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011594 0.00000