HEADER OXIDOREDUCTASE 23-MAY-14 4QGN TITLE HUMAN ACIREDUCTONE DIOXYGENASE WITH IRON ION AND L-METHIONINE IN TITLE 2 ACTIVE CENTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACIREDUCTONE DIOXYGENASE (FE(2+)-REQUIRING), ARD, FE-ARD, COMPND 5 MEMBRANE-TYPE 1 MATRIX METALLOPROTEINASE CYTOPLASMIC TAIL-BINDING COMPND 6 PROTEIN 1, MTCBP-1, SUBMERGENCE-INDUCED PROTEIN-LIKE FACTOR, SIP-L; COMPND 7 EC: 1.13.11.54; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADI1, HMFT1638, MTCBP1, NP_060739; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS DE3 RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS RMLC-LIKE CUPIN, OXIDOREDUCTASE, IRON BINDING, 1, 2-DIHYDROXY-5- KEYWDS 2 (METHYLTHIO)PENT-1-EN-3-ONE DIOXYGENASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.MILACZEWSKA,M.CHRUSZCZ,J.J.PETKOWSKI,E.NIEDZIALKOWSKA,W.MINOR, AUTHOR 2 T.BOROWSKI REVDAT 6 06-DEC-23 4QGN 1 REMARK REVDAT 5 20-SEP-23 4QGN 1 REMARK REVDAT 4 09-AUG-23 4QGN 1 JRNL REVDAT 3 13-APR-22 4QGN 1 AUTHOR JRNL REMARK SEQADV REVDAT 3 2 1 LINK REVDAT 2 22-NOV-17 4QGN 1 REMARK REVDAT 1 27-MAY-15 4QGN 0 JRNL AUTH A.MILACZEWSKA,E.KOT,J.A.AMAYA,T.M.MAKRIS,M.ZAJAC,J.KORECKI, JRNL AUTH 2 A.CHUMAKOV,B.TRZEWIK,S.KEDRACKA-KROK,W.MINOR,M.CHRUSZCZ, JRNL AUTH 3 T.BOROWSKI JRNL TITL ON THE STRUCTURE AND REACTION MECHANISM OF HUMAN JRNL TITL 2 ACIREDUCTONE DIOXYGENASE. JRNL REF CHEMISTRY V. 24 5225 2018 JRNL REFN ISSN 0947-6539 JRNL PMID 29193386 JRNL DOI 10.1002/CHEM.201704617 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 4829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 232 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 333 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 16 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1487 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.22000 REMARK 3 B22 (A**2) : -3.22000 REMARK 3 B33 (A**2) : 4.84000 REMARK 3 B12 (A**2) : -1.61000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.401 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.287 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 33.496 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1570 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1090 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2120 ; 1.276 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2617 ; 0.836 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 177 ; 6.629 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;30.544 ;23.059 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 253 ;16.611 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.445 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 212 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1726 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 352 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8444 -27.0129 -0.4558 REMARK 3 T TENSOR REMARK 3 T11: 0.0486 T22: 0.0071 REMARK 3 T33: 0.0329 T12: 0.0039 REMARK 3 T13: -0.0077 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.5779 L22: 1.5831 REMARK 3 L33: 0.5637 L12: 0.3508 REMARK 3 L13: -0.1791 L23: 0.0794 REMARK 3 S TENSOR REMARK 3 S11: 0.0194 S12: -0.0172 S13: 0.0348 REMARK 3 S21: -0.1248 S22: -0.0603 S23: 0.0809 REMARK 3 S31: -0.0217 S32: -0.0513 S33: 0.0409 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4QGN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000086030. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97912 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK HIGH-RESOLUTION REMARK 200 DOUBLE-CRYSTAL MONOCHROMATOR. REMARK 200 LN2 COOLED FIRST CRYSTAL, REMARK 200 SAGITTAL FOCUSING 2ND CRYSTAL REMARK 200 OPTICS : ROSENBAUM-ROCK VERTICAL FOCUSING REMARK 200 MIRROR, WITH PT, GLASS, PD LANES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO 3000: MOLREP, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK 3000: MOLREP, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5073 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.18200 REMARK 200 R SYM (I) : 0.18200 REMARK 200 FOR THE DATA SET : 11.0370 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.72600 REMARK 200 R SYM FOR SHELL (I) : 0.72600 REMARK 200 FOR SHELL : 2.118 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 1VR3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 20 MG/ML IN 50 MM TRIS-HCL PH REMARK 280 7.8, 150MM NACL, 2.5MM L-SELENOMETHIONINE, CRYSTALLIZATION REMARK 280 CONDITION: 0.1M SODIUM ACETATE, AMMONIUM SULFATE PH 4.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 13.60733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.21467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.60733 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.21467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 ALA A -1 REMARK 465 ALA A 0 REMARK 465 ALA A 179 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 LYS A 80 CE NZ REMARK 470 LYS A 82 CD CE NZ REMARK 470 GLN A 170 CD OE1 NE2 REMARK 470 LYS A 173 CE NZ REMARK 470 GLN A 177 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 48 70.59 -150.23 REMARK 500 ALA A 162 52.70 -148.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 88 NE2 REMARK 620 2 HIS A 90 NE2 97.6 REMARK 620 3 GLU A 94 OE1 164.8 85.9 REMARK 620 4 HIS A 133 NE2 85.4 96.5 79.5 REMARK 620 5 MSE A 204 O 88.4 160.4 93.1 102.7 REMARK 620 6 MSE A 204 N 135.4 88.7 59.1 137.9 74.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 209 DBREF 4QGN A 1 179 UNP Q9BV57 MTND_HUMAN 1 179 SEQADV 4QGN GLY A -3 UNP Q9BV57 EXPRESSION TAG SEQADV 4QGN ALA A -2 UNP Q9BV57 EXPRESSION TAG SEQADV 4QGN ALA A -1 UNP Q9BV57 EXPRESSION TAG SEQADV 4QGN ALA A 0 UNP Q9BV57 EXPRESSION TAG SEQRES 1 A 183 GLY ALA ALA ALA MET VAL GLN ALA TRP TYR MET ASP ASP SEQRES 2 A 183 ALA PRO GLY ASP PRO ARG GLN PRO HIS ARG PRO ASP PRO SEQRES 3 A 183 GLY ARG PRO VAL GLY LEU GLU GLN LEU ARG ARG LEU GLY SEQRES 4 A 183 VAL LEU TYR TRP LYS LEU ASP ALA ASP LYS TYR GLU ASN SEQRES 5 A 183 ASP PRO GLU LEU GLU LYS ILE ARG ARG GLU ARG ASN TYR SEQRES 6 A 183 SER TRP MET ASP ILE ILE THR ILE CYS LYS ASP LYS LEU SEQRES 7 A 183 PRO ASN TYR GLU GLU LYS ILE LYS MET PHE TYR GLU GLU SEQRES 8 A 183 HIS LEU HIS LEU ASP ASP GLU ILE ARG TYR ILE LEU ASP SEQRES 9 A 183 GLY SER GLY TYR PHE ASP VAL ARG ASP LYS GLU ASP GLN SEQRES 10 A 183 TRP ILE ARG ILE PHE MET GLU LYS GLY ASP MET VAL THR SEQRES 11 A 183 LEU PRO ALA GLY ILE TYR HIS ARG PHE THR VAL ASP GLU SEQRES 12 A 183 LYS ASN TYR THR LYS ALA MET ARG LEU PHE VAL GLY GLU SEQRES 13 A 183 PRO VAL TRP THR ALA TYR ASN ARG PRO ALA ASP HIS PHE SEQRES 14 A 183 GLU ALA ARG GLY GLN TYR VAL LYS PHE LEU ALA GLN THR SEQRES 15 A 183 ALA HET FE A 201 1 HET CL A 202 1 HET CL A 203 1 HET MSE A 204 14 HET SO4 A 205 5 HET SO4 A 206 5 HET SO4 A 207 5 HET SO4 A 208 5 HET ACT A 209 4 HETNAM FE FE (III) ION HETNAM CL CHLORIDE ION HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION FORMUL 2 FE FE 3+ FORMUL 3 CL 2(CL 1-) FORMUL 5 MSE C5 H11 N O2 SE FORMUL 6 SO4 4(O4 S 2-) FORMUL 10 ACT C2 H3 O2 1- FORMUL 11 HOH *26(H2 O) HELIX 1 1 GLY A 27 ARG A 33 1 7 HELIX 2 2 LYS A 45 ASN A 48 5 4 HELIX 3 3 ASP A 49 ARG A 59 1 11 HELIX 4 4 ASN A 76 GLU A 86 1 11 HELIX 5 5 PHE A 165 GLN A 177 1 13 SHEET 1 A 4 ALA A 4 TYR A 6 0 SHEET 2 A 4 TRP A 114 MET A 119 -1 O ARG A 116 N TRP A 5 SHEET 3 A 4 GLY A 103 ARG A 108 -1 N VAL A 107 O ILE A 115 SHEET 4 A 4 HIS A 133 VAL A 137 -1 O THR A 136 N TYR A 104 SHEET 1 B 5 LEU A 37 LYS A 40 0 SHEET 2 B 5 ASP A 123 LEU A 127 -1 O MET A 124 N TRP A 39 SHEET 3 B 5 GLU A 94 GLY A 101 -1 N GLU A 94 O LEU A 127 SHEET 4 B 5 THR A 143 PHE A 149 -1 O LYS A 144 N ASP A 100 SHEET 5 B 5 TRP A 63 ILE A 69 -1 N ILE A 69 O THR A 143 SHEET 1 C 2 HIS A 88 LEU A 89 0 SHEET 2 C 2 TYR A 158 ASN A 159 -1 O TYR A 158 N LEU A 89 LINK NE2 HIS A 88 FE FE A 201 1555 1555 2.23 LINK NE2 HIS A 90 FE FE A 201 1555 1555 2.19 LINK OE1 GLU A 94 FE FE A 201 1555 1555 2.28 LINK NE2 HIS A 133 FE FE A 201 1555 1555 2.19 LINK FE FE A 201 O MSE A 204 1555 1555 2.16 LINK FE FE A 201 N MSE A 204 1555 1555 2.22 CISPEP 1 ASP A 21 PRO A 22 0 4.98 CISPEP 2 ARG A 160 PRO A 161 0 -6.85 SITE 1 AC1 5 HIS A 88 HIS A 90 GLU A 94 HIS A 133 SITE 2 AC1 5 MSE A 204 SITE 1 AC2 2 ARG A 96 MSE A 204 SITE 1 AC3 2 ASN A 76 TYR A 77 SITE 1 AC4 5 TRP A 5 ARG A 19 GLY A 23 ARG A 24 SITE 2 AC4 5 PRO A 25 SITE 1 AC5 5 ARG A 24 ARG A 56 SER A 62 MET A 64 SITE 2 AC5 5 HOH A 315 SITE 1 AC6 4 GLY A 12 ASP A 13 GLU A 53 ARG A 57 SITE 1 AC7 2 ARG A 108 TRP A 114 SITE 1 AC8 5 ASP A 93 GLU A 94 ARG A 96 PHE A 149 SITE 2 AC8 5 MSE A 204 CRYST1 105.195 105.195 40.822 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009506 0.005488 0.000000 0.00000 SCALE2 0.000000 0.010977 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024497 0.00000