data_4QGP # _entry.id 4QGP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.289 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4QGP RCSB RCSB086032 WWPDB D_1000086032 # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2014-07-02 _pdbx_database_PDB_obs_spr.pdb_id 4QGP _pdbx_database_PDB_obs_spr.replace_pdb_id 3OBC _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-356701 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4QGP _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-05-23 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a pyrophosphatase (AF1178) from Archaeoglobus fulgidus DSM 4304 at 1.80 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 # _cell.entry_id 4QGP _cell.length_a 49.168 _cell.length_b 102.136 _cell.length_c 103.285 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4QGP _symmetry.Int_Tables_number 24 _symmetry.space_group_name_H-M 'I 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man pyrophosphatase 14375.931 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 1 ? ? ? ? 5 non-polymer syn 'TRIETHYLENE GLYCOL' 150.173 1 ? ? ? ? 6 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 7 water nat water 18.015 103 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHH(MSE)EELLDILREFRDSRGWLKYHTPKNLAVSISIEVAELLEIFQWTRSSDEEFEVLERRKGE VEEEIADVLIYLLFLCDVAEINPIEAVKRK(MSE)EKNERKYPKNRVHEF ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHMEELLDILREFRDSRGWLKYHTPKNLAVSISIEVAELLEIFQWTRSSDEEFEVLERRKGEVEEEIADV LIYLLFLCDVAEINPIEAVKRKMEKNERKYPKNRVHEF ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier JCSG-356701 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 MSE n 1 14 GLU n 1 15 GLU n 1 16 LEU n 1 17 LEU n 1 18 ASP n 1 19 ILE n 1 20 LEU n 1 21 ARG n 1 22 GLU n 1 23 PHE n 1 24 ARG n 1 25 ASP n 1 26 SER n 1 27 ARG n 1 28 GLY n 1 29 TRP n 1 30 LEU n 1 31 LYS n 1 32 TYR n 1 33 HIS n 1 34 THR n 1 35 PRO n 1 36 LYS n 1 37 ASN n 1 38 LEU n 1 39 ALA n 1 40 VAL n 1 41 SER n 1 42 ILE n 1 43 SER n 1 44 ILE n 1 45 GLU n 1 46 VAL n 1 47 ALA n 1 48 GLU n 1 49 LEU n 1 50 LEU n 1 51 GLU n 1 52 ILE n 1 53 PHE n 1 54 GLN n 1 55 TRP n 1 56 THR n 1 57 ARG n 1 58 SER n 1 59 SER n 1 60 ASP n 1 61 GLU n 1 62 GLU n 1 63 PHE n 1 64 GLU n 1 65 VAL n 1 66 LEU n 1 67 GLU n 1 68 ARG n 1 69 ARG n 1 70 LYS n 1 71 GLY n 1 72 GLU n 1 73 VAL n 1 74 GLU n 1 75 GLU n 1 76 GLU n 1 77 ILE n 1 78 ALA n 1 79 ASP n 1 80 VAL n 1 81 LEU n 1 82 ILE n 1 83 TYR n 1 84 LEU n 1 85 LEU n 1 86 PHE n 1 87 LEU n 1 88 CYS n 1 89 ASP n 1 90 VAL n 1 91 ALA n 1 92 GLU n 1 93 ILE n 1 94 ASN n 1 95 PRO n 1 96 ILE n 1 97 GLU n 1 98 ALA n 1 99 VAL n 1 100 LYS n 1 101 ARG n 1 102 LYS n 1 103 MSE n 1 104 GLU n 1 105 LYS n 1 106 ASN n 1 107 GLU n 1 108 ARG n 1 109 LYS n 1 110 TYR n 1 111 PRO n 1 112 LYS n 1 113 ASN n 1 114 ARG n 1 115 VAL n 1 116 HIS n 1 117 GLU n 1 118 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene AF_1178 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'DSM 4304' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Archaeoglobus fulgidus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 224325 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name MH4a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O29089_ARCFU _struct_ref.pdbx_db_accession O29089 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MEELLDILREFRDSRGWLKYHTPKNLAVSISIEVAELLEIFQWTRSSDEEFEVLERRKGEVEEEIADVLIYLLFLCDVAE INPIEAVKRKMEKNERKYPKNRVHEF ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4QGP A 13 ? 118 ? O29089 1 ? 106 ? 1 106 2 1 4QGP B 13 ? 118 ? O29089 1 ? 106 ? 1 106 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4QGP MSE A 1 ? UNP O29089 ? ? 'EXPRESSION TAG' -11 1 1 4QGP GLY A 2 ? UNP O29089 ? ? 'EXPRESSION TAG' -10 2 1 4QGP SER A 3 ? UNP O29089 ? ? 'EXPRESSION TAG' -9 3 1 4QGP ASP A 4 ? UNP O29089 ? ? 'EXPRESSION TAG' -8 4 1 4QGP LYS A 5 ? UNP O29089 ? ? 'EXPRESSION TAG' -7 5 1 4QGP ILE A 6 ? UNP O29089 ? ? 'EXPRESSION TAG' -6 6 1 4QGP HIS A 7 ? UNP O29089 ? ? 'EXPRESSION TAG' -5 7 1 4QGP HIS A 8 ? UNP O29089 ? ? 'EXPRESSION TAG' -4 8 1 4QGP HIS A 9 ? UNP O29089 ? ? 'EXPRESSION TAG' -3 9 1 4QGP HIS A 10 ? UNP O29089 ? ? 'EXPRESSION TAG' -2 10 1 4QGP HIS A 11 ? UNP O29089 ? ? 'EXPRESSION TAG' -1 11 1 4QGP HIS A 12 ? UNP O29089 ? ? 'EXPRESSION TAG' 0 12 2 4QGP MSE B 1 ? UNP O29089 ? ? 'EXPRESSION TAG' -11 13 2 4QGP GLY B 2 ? UNP O29089 ? ? 'EXPRESSION TAG' -10 14 2 4QGP SER B 3 ? UNP O29089 ? ? 'EXPRESSION TAG' -9 15 2 4QGP ASP B 4 ? UNP O29089 ? ? 'EXPRESSION TAG' -8 16 2 4QGP LYS B 5 ? UNP O29089 ? ? 'EXPRESSION TAG' -7 17 2 4QGP ILE B 6 ? UNP O29089 ? ? 'EXPRESSION TAG' -6 18 2 4QGP HIS B 7 ? UNP O29089 ? ? 'EXPRESSION TAG' -5 19 2 4QGP HIS B 8 ? UNP O29089 ? ? 'EXPRESSION TAG' -4 20 2 4QGP HIS B 9 ? UNP O29089 ? ? 'EXPRESSION TAG' -3 21 2 4QGP HIS B 10 ? UNP O29089 ? ? 'EXPRESSION TAG' -2 22 2 4QGP HIS B 11 ? UNP O29089 ? ? 'EXPRESSION TAG' -1 23 2 4QGP HIS B 12 ? UNP O29089 ? ? 'EXPRESSION TAG' 0 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PGE non-polymer . 'TRIETHYLENE GLYCOL' ? 'C6 H14 O4' 150.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4QGP # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.25 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 45.45 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;63.0% polyethylene glycol 200, 0.2M magnesium chloride, 0.1M sodium cacodylate pH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'double crystal monochromator' _diffrn_detector.pdbx_collection_date 2009-11-06 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97954 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91837,0.97954 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4QGP _reflns.d_resolution_high 1.80 _reflns.d_resolution_low 28.202 _reflns.number_obs 24327 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_netI_over_sigmaI 10.160 _reflns.percent_possible_obs 97.700 _reflns.B_iso_Wilson_estimate 22.035 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.800 1.860 7837 ? 4184 0.605 1.5 ? ? ? ? ? 95.800 1 1 1.860 1.940 9446 ? 4952 0.433 2.0 ? ? ? ? ? 99.000 2 1 1.940 2.030 8990 ? 4718 0.301 2.9 ? ? ? ? ? 99.100 3 1 2.030 2.130 8274 ? 4330 0.210 4.2 ? ? ? ? ? 98.900 4 1 2.130 2.270 9147 ? 4784 0.137 6.2 ? ? ? ? ? 98.400 5 1 2.270 2.440 8558 ? 4460 0.102 7.9 ? ? ? ? ? 98.600 6 1 2.440 2.690 8956 ? 4661 0.081 9.8 ? ? ? ? ? 98.100 7 1 2.690 3.070 8642 ? 4491 0.057 13.6 ? ? ? ? ? 97.700 8 1 3.070 3.870 8609 ? 4484 0.030 22.7 ? ? ? ? ? 96.000 9 1 3.870 28.2 8702 ? 4483 0.021 31.4 ? ? ? ? ? 95.100 10 1 # _refine.entry_id 4QGP _refine.ls_d_res_high 1.7800 _refine.ls_d_res_low 28.202 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 96.0900 _refine.ls_number_reflns_obs 24325 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. MAGNESIUM (MG), CHLORIDE (CL), AND POLYETHYLENE GLYCOL 200 FRAGMENTS (PG4 AND PGE) FROM THE CRYSTALLIZATION/CRYO CONDITIONS ARE MODELED INTO THE STRUCTURE. 4. THE DIFFRACTION DATA ARE PSEUDO-MEROHEDRALLY TWINNED WITH TWIN LAW (-H, L, K). THE REFINED TWIN FRACTION WAS 0.30. 6. REFLECTIONS FOR THE FREE-R SET WERE SELECTED BY RANDOM EXPANDED BY THE TWIN LAW. 7. NCS RESTRAINTS WERE APPLIED USING REFMAC'S LOCAL NCS OPT ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1956 _refine.ls_R_factor_R_work 0.1935 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2380 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1230 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 25.5229 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -20.8600 _refine.aniso_B[2][2] 4.0700 _refine.aniso_B[3][3] 16.7900 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9490 _refine.correlation_coeff_Fo_to_Fc_free 0.9300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0270 _refine.pdbx_overall_ESU_R_Free 0.0270 _refine.overall_SU_ML 0.0670 _refine.overall_SU_B 4.0060 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 108.380 _refine.B_iso_min 12.020 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1785 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 103 _refine_hist.number_atoms_total 1916 _refine_hist.d_res_high 1.7800 _refine_hist.d_res_low 28.202 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1923 0.011 0.019 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2609 1.406 1.971 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 241 4.823 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 100 31.027 23.900 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 351 14.058 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 15 15.081 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 289 0.100 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1443 0.006 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 886 1.875 2.787 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1111 2.480 5.202 ? ? 'X-RAY DIFFRACTION' r_scbond_it 1034 3.074 3.422 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.7810 _refine_ls_shell.d_res_low 1.8270 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 61.3400 _refine_ls_shell.number_reflns_R_work 1089 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.1960 _refine_ls_shell.R_factor_R_free 0.2600 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 50 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1139 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4QGP _struct.title 'Crystal structure of a pyrophosphatase (AF1178) from Archaeoglobus fulgidus DSM 4304 at 1.80 A resolution' _struct.pdbx_descriptor pyrophosphatase _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;dimeric four alpha-helical bundle, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, HYDROLASE ; _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.entry_id 4QGP # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 5 ? H N N 6 ? I N N 6 ? J N N 7 ? K N N 7 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 12 ? ARG A 27 ? HIS A 0 ARG A 15 1 ? 16 HELX_P HELX_P2 2 TRP A 29 ? HIS A 33 ? TRP A 17 HIS A 21 5 ? 5 HELX_P HELX_P3 3 THR A 34 ? PHE A 53 ? THR A 22 PHE A 41 1 ? 20 HELX_P HELX_P4 4 SER A 58 ? ARG A 69 ? SER A 46 ARG A 57 1 ? 12 HELX_P HELX_P5 5 ARG A 69 ? GLU A 92 ? ARG A 57 GLU A 80 1 ? 24 HELX_P HELX_P6 6 ASN A 94 ? TYR A 110 ? ASN A 82 TYR A 98 1 ? 17 HELX_P HELX_P7 7 HIS B 11 ? ARG B 27 ? HIS B -1 ARG B 15 1 ? 17 HELX_P HELX_P8 8 TRP B 29 ? HIS B 33 ? TRP B 17 HIS B 21 5 ? 5 HELX_P HELX_P9 9 THR B 34 ? PHE B 53 ? THR B 22 PHE B 41 1 ? 20 HELX_P HELX_P10 10 SER B 58 ? ARG B 69 ? SER B 46 ARG B 57 1 ? 12 HELX_P HELX_P11 11 ARG B 69 ? GLU B 92 ? ARG B 57 GLU B 80 1 ? 24 HELX_P HELX_P12 12 ASN B 94 ? TYR B 110 ? ASN B 82 TYR B 98 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A HIS 12 C ? ? ? 1_555 A MSE 13 N ? ? A HIS 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.333 ? covale2 covale ? ? A MSE 13 C ? ? ? 1_555 A GLU 14 N ? ? A MSE 1 A GLU 2 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A LYS 102 C ? ? ? 1_555 A MSE 103 N ? ? A LYS 90 A MSE 91 1_555 ? ? ? ? ? ? ? 1.338 ? covale4 covale ? ? A MSE 103 C ? ? ? 1_555 A GLU 104 N ? ? A MSE 91 A GLU 92 1_555 ? ? ? ? ? ? ? 1.332 ? covale5 covale ? ? B HIS 12 C ? ? ? 1_555 B MSE 13 N ? ? B HIS 0 B MSE 1 1_555 ? ? ? ? ? ? ? 1.329 ? covale6 covale ? ? B MSE 13 C ? ? ? 1_555 B GLU 14 N ? ? B MSE 1 B GLU 2 1_555 ? ? ? ? ? ? ? 1.332 ? covale7 covale ? ? B LYS 102 C ? ? ? 1_555 B MSE 103 N ? ? B LYS 90 B MSE 91 1_555 ? ? ? ? ? ? ? 1.337 ? covale8 covale ? ? B MSE 103 C ? ? ? 1_555 B GLU 104 N ? ? B MSE 91 B GLU 92 1_555 ? ? ? ? ? ? ? 1.335 ? metalc1 metalc ? ? B GLU 48 OE1 ? ? ? 1_555 E MG . MG ? ? B GLU 36 B MG 201 1_555 ? ? ? ? ? ? ? 2.019 ? metalc2 metalc ? ? A GLU 48 OE1 ? ? ? 1_555 C MG . MG ? ? A GLU 36 A MG 201 1_555 ? ? ? ? ? ? ? 2.022 ? metalc3 metalc ? ? A GLU 45 OE1 ? ? ? 1_555 C MG . MG ? ? A GLU 33 A MG 201 1_555 ? ? ? ? ? ? ? 2.036 ? metalc4 metalc ? ? A ASP 79 OD2 ? ? ? 1_555 C MG . MG ? ? A ASP 67 A MG 201 1_555 ? ? ? ? ? ? ? 2.037 ? metalc5 metalc ? ? B ASP 79 OD2 ? ? ? 1_555 E MG . MG ? ? B ASP 67 B MG 201 1_555 ? ? ? ? ? ? ? 2.038 ? metalc6 metalc ? ? B GLU 45 OE1 ? ? ? 1_555 E MG . MG ? ? B GLU 33 B MG 201 1_555 ? ? ? ? ? ? ? 2.039 ? metalc7 metalc ? ? A GLU 76 OE1 ? ? ? 1_555 C MG . MG ? ? A GLU 64 A MG 201 1_555 ? ? ? ? ? ? ? 2.075 ? metalc8 metalc ? ? B GLU 76 OE1 ? ? ? 1_555 E MG . MG ? ? B GLU 64 B MG 201 1_555 ? ? ? ? ? ? ? 2.186 ? metalc9 metalc ? ? F PG4 . O5 ? ? ? 1_555 I NA . NA ? ? B PG4 202 B NA 205 1_555 ? ? ? ? ? ? ? 2.880 ? metalc10 metalc ? ? F PG4 . O4 ? ? ? 1_555 I NA . NA ? ? B PG4 202 B NA 205 1_555 ? ? ? ? ? ? ? 3.098 ? metalc11 metalc ? ? G PGE . O2 ? ? ? 1_555 H NA . NA ? ? B PGE 203 B NA 204 1_555 ? ? ? ? ? ? ? 3.129 ? metalc12 metalc ? ? G PGE . O1 ? ? ? 1_555 H NA . NA ? ? B PGE 203 B NA 204 1_555 ? ? ? ? ? ? ? 3.147 ? metalc13 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 201 B HOH 304 1_555 ? ? ? ? ? ? ? 1.946 ? metalc14 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 201 B HOH 302 1_555 ? ? ? ? ? ? ? 2.152 ? metalc15 metalc ? ? C MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 201 A HOH 302 1_555 ? ? ? ? ? ? ? 2.164 ? metalc16 metalc ? ? C MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 201 A HOH 305 1_555 ? ? ? ? ? ? ? 2.385 ? metalc17 metalc ? ? H NA . NA ? ? ? 1_555 K HOH . O ? ? B NA 204 B HOH 335 1_555 ? ? ? ? ? ? ? 2.745 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS A 8 ? HIS A 11 ? HIS A -4 HIS A -1 A 2 HIS B 7 ? HIS B 10 ? HIS B -5 HIS B -2 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id HIS _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 10 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id HIS _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id -2 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id HIS _pdbx_struct_sheet_hbond.range_2_label_asym_id B _pdbx_struct_sheet_hbond.range_2_label_seq_id 8 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id HIS _pdbx_struct_sheet_hbond.range_2_auth_asym_id B _pdbx_struct_sheet_hbond.range_2_auth_seq_id -4 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MG A 201' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE CL A 202' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MG B 201' AC4 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE PG4 B 202' AC5 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE PGE B 203' AC6 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE NA B 204' AC7 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE NA B 205' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLU A 45 ? GLU A 33 . ? 1_555 ? 2 AC1 6 GLU A 48 ? GLU A 36 . ? 1_555 ? 3 AC1 6 GLU A 76 ? GLU A 64 . ? 1_555 ? 4 AC1 6 ASP A 79 ? ASP A 67 . ? 1_555 ? 5 AC1 6 HOH J . ? HOH A 302 . ? 1_555 ? 6 AC1 6 HOH J . ? HOH A 305 . ? 1_555 ? 7 AC2 5 HIS A 11 ? HIS A -1 . ? 1_555 ? 8 AC2 5 MSE A 13 ? MSE A 1 . ? 1_555 ? 9 AC2 5 GLU A 14 ? GLU A 2 . ? 1_555 ? 10 AC2 5 HIS B 12 ? HIS B 0 . ? 1_555 ? 11 AC2 5 HOH K . ? HOH B 328 . ? 1_555 ? 12 AC3 6 GLU B 45 ? GLU B 33 . ? 1_555 ? 13 AC3 6 GLU B 48 ? GLU B 36 . ? 1_555 ? 14 AC3 6 GLU B 76 ? GLU B 64 . ? 1_555 ? 15 AC3 6 ASP B 79 ? ASP B 67 . ? 1_555 ? 16 AC3 6 HOH K . ? HOH B 302 . ? 1_555 ? 17 AC3 6 HOH K . ? HOH B 304 . ? 1_555 ? 18 AC4 6 LEU A 30 ? LEU A 18 . ? 1_555 ? 19 AC4 6 LYS A 31 ? LYS A 19 . ? 1_555 ? 20 AC4 6 HIS A 33 ? HIS A 21 . ? 1_555 ? 21 AC4 6 SER B 59 ? SER B 47 . ? 1_555 ? 22 AC4 6 PHE B 63 ? PHE B 51 . ? 1_555 ? 23 AC4 6 NA I . ? NA B 205 . ? 1_555 ? 24 AC5 5 PHE A 63 ? PHE A 51 . ? 1_455 ? 25 AC5 5 LEU B 30 ? LEU B 18 . ? 1_455 ? 26 AC5 5 LYS B 31 ? LYS B 19 . ? 1_455 ? 27 AC5 5 HIS B 33 ? HIS B 21 . ? 1_455 ? 28 AC5 5 NA H . ? NA B 204 . ? 1_555 ? 29 AC6 2 PGE G . ? PGE B 203 . ? 1_555 ? 30 AC6 2 HOH K . ? HOH B 335 . ? 1_555 ? 31 AC7 1 PG4 F . ? PG4 B 202 . ? 1_555 ? # _atom_sites.entry_id 4QGP _atom_sites.fract_transf_matrix[1][1] 0.020338 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009791 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009682 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL MG N NA O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 ? ? ? A . n A 1 4 ASP 4 -8 ? ? ? A . n A 1 5 LYS 5 -7 -7 LYS LYS A . n A 1 6 ILE 6 -6 -6 ILE ILE A . n A 1 7 HIS 7 -5 -5 HIS HIS A . n A 1 8 HIS 8 -4 -4 HIS HIS A . n A 1 9 HIS 9 -3 -3 HIS HIS A . n A 1 10 HIS 10 -2 -2 HIS HIS A . n A 1 11 HIS 11 -1 -1 HIS HIS A . n A 1 12 HIS 12 0 0 HIS HIS A . n A 1 13 MSE 13 1 1 MSE MSE A . n A 1 14 GLU 14 2 2 GLU GLU A . n A 1 15 GLU 15 3 3 GLU GLU A . n A 1 16 LEU 16 4 4 LEU LEU A . n A 1 17 LEU 17 5 5 LEU LEU A . n A 1 18 ASP 18 6 6 ASP ASP A . n A 1 19 ILE 19 7 7 ILE ILE A . n A 1 20 LEU 20 8 8 LEU LEU A . n A 1 21 ARG 21 9 9 ARG ARG A . n A 1 22 GLU 22 10 10 GLU GLU A . n A 1 23 PHE 23 11 11 PHE PHE A . n A 1 24 ARG 24 12 12 ARG ARG A . n A 1 25 ASP 25 13 13 ASP ASP A . n A 1 26 SER 26 14 14 SER SER A . n A 1 27 ARG 27 15 15 ARG ARG A . n A 1 28 GLY 28 16 16 GLY GLY A . n A 1 29 TRP 29 17 17 TRP TRP A . n A 1 30 LEU 30 18 18 LEU LEU A . n A 1 31 LYS 31 19 19 LYS LYS A . n A 1 32 TYR 32 20 20 TYR TYR A . n A 1 33 HIS 33 21 21 HIS HIS A . n A 1 34 THR 34 22 22 THR THR A . n A 1 35 PRO 35 23 23 PRO PRO A . n A 1 36 LYS 36 24 24 LYS LYS A . n A 1 37 ASN 37 25 25 ASN ASN A . n A 1 38 LEU 38 26 26 LEU LEU A . n A 1 39 ALA 39 27 27 ALA ALA A . n A 1 40 VAL 40 28 28 VAL VAL A . n A 1 41 SER 41 29 29 SER SER A . n A 1 42 ILE 42 30 30 ILE ILE A . n A 1 43 SER 43 31 31 SER SER A . n A 1 44 ILE 44 32 32 ILE ILE A . n A 1 45 GLU 45 33 33 GLU GLU A . n A 1 46 VAL 46 34 34 VAL VAL A . n A 1 47 ALA 47 35 35 ALA ALA A . n A 1 48 GLU 48 36 36 GLU GLU A . n A 1 49 LEU 49 37 37 LEU LEU A . n A 1 50 LEU 50 38 38 LEU LEU A . n A 1 51 GLU 51 39 39 GLU GLU A . n A 1 52 ILE 52 40 40 ILE ILE A . n A 1 53 PHE 53 41 41 PHE PHE A . n A 1 54 GLN 54 42 42 GLN GLN A . n A 1 55 TRP 55 43 43 TRP TRP A . n A 1 56 THR 56 44 44 THR THR A . n A 1 57 ARG 57 45 45 ARG ARG A . n A 1 58 SER 58 46 46 SER SER A . n A 1 59 SER 59 47 47 SER SER A . n A 1 60 ASP 60 48 48 ASP ASP A . n A 1 61 GLU 61 49 49 GLU GLU A . n A 1 62 GLU 62 50 50 GLU GLU A . n A 1 63 PHE 63 51 51 PHE PHE A . n A 1 64 GLU 64 52 52 GLU GLU A . n A 1 65 VAL 65 53 53 VAL VAL A . n A 1 66 LEU 66 54 54 LEU LEU A . n A 1 67 GLU 67 55 55 GLU GLU A . n A 1 68 ARG 68 56 56 ARG ARG A . n A 1 69 ARG 69 57 57 ARG ARG A . n A 1 70 LYS 70 58 58 LYS LYS A . n A 1 71 GLY 71 59 59 GLY GLY A . n A 1 72 GLU 72 60 60 GLU GLU A . n A 1 73 VAL 73 61 61 VAL VAL A . n A 1 74 GLU 74 62 62 GLU GLU A . n A 1 75 GLU 75 63 63 GLU GLU A . n A 1 76 GLU 76 64 64 GLU GLU A . n A 1 77 ILE 77 65 65 ILE ILE A . n A 1 78 ALA 78 66 66 ALA ALA A . n A 1 79 ASP 79 67 67 ASP ASP A . n A 1 80 VAL 80 68 68 VAL VAL A . n A 1 81 LEU 81 69 69 LEU LEU A . n A 1 82 ILE 82 70 70 ILE ILE A . n A 1 83 TYR 83 71 71 TYR TYR A . n A 1 84 LEU 84 72 72 LEU LEU A . n A 1 85 LEU 85 73 73 LEU LEU A . n A 1 86 PHE 86 74 74 PHE PHE A . n A 1 87 LEU 87 75 75 LEU LEU A . n A 1 88 CYS 88 76 76 CYS CYS A . n A 1 89 ASP 89 77 77 ASP ASP A . n A 1 90 VAL 90 78 78 VAL VAL A . n A 1 91 ALA 91 79 79 ALA ALA A . n A 1 92 GLU 92 80 80 GLU GLU A . n A 1 93 ILE 93 81 81 ILE ILE A . n A 1 94 ASN 94 82 82 ASN ASN A . n A 1 95 PRO 95 83 83 PRO PRO A . n A 1 96 ILE 96 84 84 ILE ILE A . n A 1 97 GLU 97 85 85 GLU GLU A . n A 1 98 ALA 98 86 86 ALA ALA A . n A 1 99 VAL 99 87 87 VAL VAL A . n A 1 100 LYS 100 88 88 LYS LYS A . n A 1 101 ARG 101 89 89 ARG ARG A . n A 1 102 LYS 102 90 90 LYS LYS A . n A 1 103 MSE 103 91 91 MSE MSE A . n A 1 104 GLU 104 92 92 GLU GLU A . n A 1 105 LYS 105 93 93 LYS LYS A . n A 1 106 ASN 106 94 94 ASN ASN A . n A 1 107 GLU 107 95 95 GLU GLU A . n A 1 108 ARG 108 96 96 ARG ARG A . n A 1 109 LYS 109 97 97 LYS LYS A . n A 1 110 TYR 110 98 98 TYR TYR A . n A 1 111 PRO 111 99 99 PRO PRO A . n A 1 112 LYS 112 100 100 LYS LYS A . n A 1 113 ASN 113 101 ? ? ? A . n A 1 114 ARG 114 102 ? ? ? A . n A 1 115 VAL 115 103 ? ? ? A . n A 1 116 HIS 116 104 ? ? ? A . n A 1 117 GLU 117 105 ? ? ? A . n A 1 118 PHE 118 106 ? ? ? A . n B 1 1 MSE 1 -11 ? ? ? B . n B 1 2 GLY 2 -10 ? ? ? B . n B 1 3 SER 3 -9 ? ? ? B . n B 1 4 ASP 4 -8 ? ? ? B . n B 1 5 LYS 5 -7 ? ? ? B . n B 1 6 ILE 6 -6 -6 ILE ILE B . n B 1 7 HIS 7 -5 -5 HIS HIS B . n B 1 8 HIS 8 -4 -4 HIS HIS B . n B 1 9 HIS 9 -3 -3 HIS HIS B . n B 1 10 HIS 10 -2 -2 HIS HIS B . n B 1 11 HIS 11 -1 -1 HIS HIS B . n B 1 12 HIS 12 0 0 HIS HIS B . n B 1 13 MSE 13 1 1 MSE MSE B . n B 1 14 GLU 14 2 2 GLU GLU B . n B 1 15 GLU 15 3 3 GLU GLU B . n B 1 16 LEU 16 4 4 LEU LEU B . n B 1 17 LEU 17 5 5 LEU LEU B . n B 1 18 ASP 18 6 6 ASP ASP B . n B 1 19 ILE 19 7 7 ILE ILE B . n B 1 20 LEU 20 8 8 LEU LEU B . n B 1 21 ARG 21 9 9 ARG ARG B . n B 1 22 GLU 22 10 10 GLU GLU B . n B 1 23 PHE 23 11 11 PHE PHE B . n B 1 24 ARG 24 12 12 ARG ARG B . n B 1 25 ASP 25 13 13 ASP ASP B . n B 1 26 SER 26 14 14 SER SER B . n B 1 27 ARG 27 15 15 ARG ARG B . n B 1 28 GLY 28 16 16 GLY GLY B . n B 1 29 TRP 29 17 17 TRP TRP B . n B 1 30 LEU 30 18 18 LEU LEU B . n B 1 31 LYS 31 19 19 LYS LYS B . n B 1 32 TYR 32 20 20 TYR TYR B . n B 1 33 HIS 33 21 21 HIS HIS B . n B 1 34 THR 34 22 22 THR THR B . n B 1 35 PRO 35 23 23 PRO PRO B . n B 1 36 LYS 36 24 24 LYS LYS B . n B 1 37 ASN 37 25 25 ASN ASN B . n B 1 38 LEU 38 26 26 LEU LEU B . n B 1 39 ALA 39 27 27 ALA ALA B . n B 1 40 VAL 40 28 28 VAL VAL B . n B 1 41 SER 41 29 29 SER SER B . n B 1 42 ILE 42 30 30 ILE ILE B . n B 1 43 SER 43 31 31 SER SER B . n B 1 44 ILE 44 32 32 ILE ILE B . n B 1 45 GLU 45 33 33 GLU GLU B . n B 1 46 VAL 46 34 34 VAL VAL B . n B 1 47 ALA 47 35 35 ALA ALA B . n B 1 48 GLU 48 36 36 GLU GLU B . n B 1 49 LEU 49 37 37 LEU LEU B . n B 1 50 LEU 50 38 38 LEU LEU B . n B 1 51 GLU 51 39 39 GLU GLU B . n B 1 52 ILE 52 40 40 ILE ILE B . n B 1 53 PHE 53 41 41 PHE PHE B . n B 1 54 GLN 54 42 42 GLN GLN B . n B 1 55 TRP 55 43 43 TRP TRP B . n B 1 56 THR 56 44 44 THR THR B . n B 1 57 ARG 57 45 45 ARG ARG B . n B 1 58 SER 58 46 46 SER SER B . n B 1 59 SER 59 47 47 SER SER B . n B 1 60 ASP 60 48 48 ASP ASP B . n B 1 61 GLU 61 49 49 GLU GLU B . n B 1 62 GLU 62 50 50 GLU GLU B . n B 1 63 PHE 63 51 51 PHE PHE B . n B 1 64 GLU 64 52 52 GLU GLU B . n B 1 65 VAL 65 53 53 VAL VAL B . n B 1 66 LEU 66 54 54 LEU LEU B . n B 1 67 GLU 67 55 55 GLU GLU B . n B 1 68 ARG 68 56 56 ARG ARG B . n B 1 69 ARG 69 57 57 ARG ARG B . n B 1 70 LYS 70 58 58 LYS LYS B . n B 1 71 GLY 71 59 59 GLY GLY B . n B 1 72 GLU 72 60 60 GLU GLU B . n B 1 73 VAL 73 61 61 VAL VAL B . n B 1 74 GLU 74 62 62 GLU GLU B . n B 1 75 GLU 75 63 63 GLU GLU B . n B 1 76 GLU 76 64 64 GLU GLU B . n B 1 77 ILE 77 65 65 ILE ILE B . n B 1 78 ALA 78 66 66 ALA ALA B . n B 1 79 ASP 79 67 67 ASP ASP B . n B 1 80 VAL 80 68 68 VAL VAL B . n B 1 81 LEU 81 69 69 LEU LEU B . n B 1 82 ILE 82 70 70 ILE ILE B . n B 1 83 TYR 83 71 71 TYR TYR B . n B 1 84 LEU 84 72 72 LEU LEU B . n B 1 85 LEU 85 73 73 LEU LEU B . n B 1 86 PHE 86 74 74 PHE PHE B . n B 1 87 LEU 87 75 75 LEU LEU B . n B 1 88 CYS 88 76 76 CYS CYS B . n B 1 89 ASP 89 77 77 ASP ASP B . n B 1 90 VAL 90 78 78 VAL VAL B . n B 1 91 ALA 91 79 79 ALA ALA B . n B 1 92 GLU 92 80 80 GLU GLU B . n B 1 93 ILE 93 81 81 ILE ILE B . n B 1 94 ASN 94 82 82 ASN ASN B . n B 1 95 PRO 95 83 83 PRO PRO B . n B 1 96 ILE 96 84 84 ILE ILE B . n B 1 97 GLU 97 85 85 GLU GLU B . n B 1 98 ALA 98 86 86 ALA ALA B . n B 1 99 VAL 99 87 87 VAL VAL B . n B 1 100 LYS 100 88 88 LYS LYS B . n B 1 101 ARG 101 89 89 ARG ARG B . n B 1 102 LYS 102 90 90 LYS LYS B . n B 1 103 MSE 103 91 91 MSE MSE B . n B 1 104 GLU 104 92 92 GLU GLU B . n B 1 105 LYS 105 93 93 LYS LYS B . n B 1 106 ASN 106 94 94 ASN ASN B . n B 1 107 GLU 107 95 95 GLU GLU B . n B 1 108 ARG 108 96 96 ARG ARG B . n B 1 109 LYS 109 97 97 LYS LYS B . n B 1 110 TYR 110 98 98 TYR TYR B . n B 1 111 PRO 111 99 99 PRO PRO B . n B 1 112 LYS 112 100 100 LYS LYS B . n B 1 113 ASN 113 101 ? ? ? B . n B 1 114 ARG 114 102 ? ? ? B . n B 1 115 VAL 115 103 ? ? ? B . n B 1 116 HIS 116 104 ? ? ? B . n B 1 117 GLU 117 105 ? ? ? B . n B 1 118 PHE 118 106 ? ? ? B . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 201 107 MG MG A . D 3 CL 1 202 111 CL CL A . E 2 MG 1 201 108 MG MG B . F 4 PG4 1 202 109 PG4 PG4 B . G 5 PGE 1 203 110 PGE PGE B . H 6 NA 1 204 112 NA NA B . I 6 NA 1 205 113 NA NA B . J 7 HOH 1 301 114 HOH HOH A . J 7 HOH 2 302 115 HOH HOH A . J 7 HOH 3 303 116 HOH HOH A . J 7 HOH 4 304 120 HOH HOH A . J 7 HOH 5 305 121 HOH HOH A . J 7 HOH 6 306 126 HOH HOH A . J 7 HOH 7 307 128 HOH HOH A . J 7 HOH 8 308 131 HOH HOH A . J 7 HOH 9 309 135 HOH HOH A . J 7 HOH 10 310 136 HOH HOH A . J 7 HOH 11 311 137 HOH HOH A . J 7 HOH 12 312 141 HOH HOH A . J 7 HOH 13 313 142 HOH HOH A . J 7 HOH 14 314 143 HOH HOH A . J 7 HOH 15 315 145 HOH HOH A . J 7 HOH 16 316 146 HOH HOH A . J 7 HOH 17 317 148 HOH HOH A . J 7 HOH 18 318 149 HOH HOH A . J 7 HOH 19 319 153 HOH HOH A . J 7 HOH 20 320 154 HOH HOH A . J 7 HOH 21 321 156 HOH HOH A . J 7 HOH 22 322 160 HOH HOH A . J 7 HOH 23 323 162 HOH HOH A . J 7 HOH 24 324 164 HOH HOH A . J 7 HOH 25 325 165 HOH HOH A . J 7 HOH 26 326 167 HOH HOH A . J 7 HOH 27 327 168 HOH HOH A . J 7 HOH 28 328 169 HOH HOH A . J 7 HOH 29 329 170 HOH HOH A . J 7 HOH 30 330 173 HOH HOH A . J 7 HOH 31 331 180 HOH HOH A . J 7 HOH 32 332 181 HOH HOH A . J 7 HOH 33 333 183 HOH HOH A . J 7 HOH 34 334 185 HOH HOH A . J 7 HOH 35 335 187 HOH HOH A . J 7 HOH 36 336 191 HOH HOH A . J 7 HOH 37 337 192 HOH HOH A . J 7 HOH 38 338 195 HOH HOH A . J 7 HOH 39 339 202 HOH HOH A . J 7 HOH 40 340 203 HOH HOH A . J 7 HOH 41 341 204 HOH HOH A . J 7 HOH 42 342 205 HOH HOH A . J 7 HOH 43 343 214 HOH HOH A . J 7 HOH 44 344 216 HOH HOH A . K 7 HOH 1 301 117 HOH HOH B . K 7 HOH 2 302 118 HOH HOH B . K 7 HOH 3 303 119 HOH HOH B . K 7 HOH 4 304 122 HOH HOH B . K 7 HOH 5 305 123 HOH HOH B . K 7 HOH 6 306 124 HOH HOH B . K 7 HOH 7 307 125 HOH HOH B . K 7 HOH 8 308 127 HOH HOH B . K 7 HOH 9 309 129 HOH HOH B . K 7 HOH 10 310 130 HOH HOH B . K 7 HOH 11 311 132 HOH HOH B . K 7 HOH 12 312 133 HOH HOH B . K 7 HOH 13 313 134 HOH HOH B . K 7 HOH 14 314 138 HOH HOH B . K 7 HOH 15 315 139 HOH HOH B . K 7 HOH 16 316 140 HOH HOH B . K 7 HOH 17 317 144 HOH HOH B . K 7 HOH 18 318 147 HOH HOH B . K 7 HOH 19 319 150 HOH HOH B . K 7 HOH 20 320 151 HOH HOH B . K 7 HOH 21 321 152 HOH HOH B . K 7 HOH 22 322 155 HOH HOH B . K 7 HOH 23 323 157 HOH HOH B . K 7 HOH 24 324 158 HOH HOH B . K 7 HOH 25 325 159 HOH HOH B . K 7 HOH 26 326 161 HOH HOH B . K 7 HOH 27 327 163 HOH HOH B . K 7 HOH 28 328 166 HOH HOH B . K 7 HOH 29 329 171 HOH HOH B . K 7 HOH 30 330 172 HOH HOH B . K 7 HOH 31 331 174 HOH HOH B . K 7 HOH 32 332 175 HOH HOH B . K 7 HOH 33 333 176 HOH HOH B . K 7 HOH 34 334 177 HOH HOH B . K 7 HOH 35 335 178 HOH HOH B . K 7 HOH 36 336 179 HOH HOH B . K 7 HOH 37 337 182 HOH HOH B . K 7 HOH 38 338 184 HOH HOH B . K 7 HOH 39 339 186 HOH HOH B . K 7 HOH 40 340 188 HOH HOH B . K 7 HOH 41 341 189 HOH HOH B . K 7 HOH 42 342 190 HOH HOH B . K 7 HOH 43 343 193 HOH HOH B . K 7 HOH 44 344 194 HOH HOH B . K 7 HOH 45 345 196 HOH HOH B . K 7 HOH 46 346 197 HOH HOH B . K 7 HOH 47 347 198 HOH HOH B . K 7 HOH 48 348 199 HOH HOH B . K 7 HOH 49 349 200 HOH HOH B . K 7 HOH 50 350 201 HOH HOH B . K 7 HOH 51 351 206 HOH HOH B . K 7 HOH 52 352 207 HOH HOH B . K 7 HOH 53 353 208 HOH HOH B . K 7 HOH 54 354 209 HOH HOH B . K 7 HOH 55 355 210 HOH HOH B . K 7 HOH 56 356 211 HOH HOH B . K 7 HOH 57 357 212 HOH HOH B . K 7 HOH 58 358 213 HOH HOH B . K 7 HOH 59 359 215 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 13 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 103 A MSE 91 ? MET SELENOMETHIONINE 3 B MSE 13 B MSE 1 ? MET SELENOMETHIONINE 4 B MSE 103 B MSE 91 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA tetrameric 4 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C,D,E,F,G,H,I,J,K 2 1 A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 18830 ? 1 MORE -208 ? 1 'SSA (A^2)' 19370 ? 2 'ABSA (A^2)' 7390 ? 2 MORE -94 ? 2 'SSA (A^2)' 11710 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 x,-y,-z+1/2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 51.6425000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 336 ? J HOH . 2 1 A HOH 338 ? J HOH . 3 1 B HOH 349 ? K HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? B GLU 48 ? B GLU 36 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 OD2 ? B ASP 79 ? B ASP 67 ? 1_555 175.2 ? 2 OE1 ? B GLU 48 ? B GLU 36 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 OE1 ? B GLU 45 ? B GLU 33 ? 1_555 87.7 ? 3 OD2 ? B ASP 79 ? B ASP 67 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 OE1 ? B GLU 45 ? B GLU 33 ? 1_555 92.0 ? 4 OE1 ? B GLU 48 ? B GLU 36 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 OE1 ? B GLU 76 ? B GLU 64 ? 1_555 86.9 ? 5 OD2 ? B ASP 79 ? B ASP 67 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 OE1 ? B GLU 76 ? B GLU 64 ? 1_555 88.3 ? 6 OE1 ? B GLU 45 ? B GLU 33 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 OE1 ? B GLU 76 ? B GLU 64 ? 1_555 91.3 ? 7 OE1 ? B GLU 48 ? B GLU 36 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? K HOH . ? B HOH 304 ? 1_555 92.1 ? 8 OD2 ? B ASP 79 ? B ASP 67 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? K HOH . ? B HOH 304 ? 1_555 92.7 ? 9 OE1 ? B GLU 45 ? B GLU 33 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? K HOH . ? B HOH 304 ? 1_555 89.2 ? 10 OE1 ? B GLU 76 ? B GLU 64 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? K HOH . ? B HOH 304 ? 1_555 178.9 ? 11 OE1 ? B GLU 48 ? B GLU 36 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? K HOH . ? B HOH 302 ? 1_555 90.7 ? 12 OD2 ? B ASP 79 ? B ASP 67 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? K HOH . ? B HOH 302 ? 1_555 89.8 ? 13 OE1 ? B GLU 45 ? B GLU 33 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? K HOH . ? B HOH 302 ? 1_555 177.5 ? 14 OE1 ? B GLU 76 ? B GLU 64 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? K HOH . ? B HOH 302 ? 1_555 90.5 ? 15 O ? K HOH . ? B HOH 304 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? K HOH . ? B HOH 302 ? 1_555 89.0 ? 16 OE1 ? A GLU 48 ? A GLU 36 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 OE1 ? A GLU 45 ? A GLU 33 ? 1_555 87.9 ? 17 OE1 ? A GLU 48 ? A GLU 36 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 OD2 ? A ASP 79 ? A ASP 67 ? 1_555 177.4 ? 18 OE1 ? A GLU 45 ? A GLU 33 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 OD2 ? A ASP 79 ? A ASP 67 ? 1_555 93.6 ? 19 OE1 ? A GLU 48 ? A GLU 36 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 OE1 ? A GLU 76 ? A GLU 64 ? 1_555 90.6 ? 20 OE1 ? A GLU 45 ? A GLU 33 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 OE1 ? A GLU 76 ? A GLU 64 ? 1_555 93.1 ? 21 OD2 ? A ASP 79 ? A ASP 67 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 OE1 ? A GLU 76 ? A GLU 64 ? 1_555 91.5 ? 22 OE1 ? A GLU 48 ? A GLU 36 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? J HOH . ? A HOH 302 ? 1_555 89.5 ? 23 OE1 ? A GLU 45 ? A GLU 33 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? J HOH . ? A HOH 302 ? 1_555 170.7 ? 24 OD2 ? A ASP 79 ? A ASP 67 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? J HOH . ? A HOH 302 ? 1_555 88.7 ? 25 OE1 ? A GLU 76 ? A GLU 64 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? J HOH . ? A HOH 302 ? 1_555 95.9 ? 26 OE1 ? A GLU 48 ? A GLU 36 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? J HOH . ? A HOH 305 ? 1_555 86.6 ? 27 OE1 ? A GLU 45 ? A GLU 33 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? J HOH . ? A HOH 305 ? 1_555 91.0 ? 28 OD2 ? A ASP 79 ? A ASP 67 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? J HOH . ? A HOH 305 ? 1_555 91.2 ? 29 OE1 ? A GLU 76 ? A GLU 64 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? J HOH . ? A HOH 305 ? 1_555 175.0 ? 30 O ? J HOH . ? A HOH 302 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? J HOH . ? A HOH 305 ? 1_555 79.9 ? 31 O5 ? F PG4 . ? B PG4 202 ? 1_555 NA ? I NA . ? B NA 205 ? 1_555 O4 ? F PG4 . ? B PG4 202 ? 1_555 53.5 ? 32 O2 ? G PGE . ? B PGE 203 ? 1_555 NA ? H NA . ? B NA 204 ? 1_555 O1 ? G PGE . ? B PGE 203 ? 1_555 53.0 ? 33 O2 ? G PGE . ? B PGE 203 ? 1_555 NA ? H NA . ? B NA 204 ? 1_555 O ? K HOH . ? B HOH 335 ? 1_555 147.9 ? 34 O1 ? G PGE . ? B PGE 203 ? 1_555 NA ? H NA . ? B NA 204 ? 1_555 O ? K HOH . ? B HOH 335 ? 1_555 113.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-02 2 'Structure model' 1 1 2017-11-22 3 'Structure model' 1 2 2018-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.classification' 2 2 'Structure model' '_software.name' 3 3 'Structure model' '_citation_author.name' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 5.3829 7.9754 13.3497 0.1416 0.1022 0.0130 -0.0081 0.0064 0.0154 0.6001 0.5253 0.5806 0.0577 0.0050 -0.1499 -0.0162 0.0431 -0.0269 0.0607 0.0739 -0.0097 -0.1050 -0.0672 0.0247 'X-RAY DIFFRACTION' 2 ? refined 6.7499 10.8011 16.5581 0.1286 0.0867 0.0041 0.0040 -0.0054 0.0151 0.9651 0.4843 0.4417 0.1402 -0.1113 -0.2177 0.0116 0.0101 -0.0217 0.0541 0.0002 0.0199 -0.0519 -0.0402 -0.0235 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A -7 A 100 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B -6 B 100 ? . . . . ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'January 30, 2009' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 REFMAC 5.7.0032 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 4QGP _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'THE CONSTRUCT (RESIDUES 1-106) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHH.' # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id TYR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 98 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -117.91 _pdbx_validate_torsion.psi 76.13 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS -7 ? CG ? A LYS 5 CG 2 1 Y 1 A LYS -7 ? CD ? A LYS 5 CD 3 1 Y 1 A LYS -7 ? CE ? A LYS 5 CE 4 1 Y 1 A LYS -7 ? NZ ? A LYS 5 NZ 5 1 Y 1 A GLU 55 ? CG ? A GLU 67 CG 6 1 Y 1 A GLU 55 ? CD ? A GLU 67 CD 7 1 Y 1 A GLU 55 ? OE1 ? A GLU 67 OE1 8 1 Y 1 A GLU 55 ? OE2 ? A GLU 67 OE2 9 1 Y 1 A GLU 62 ? CD ? A GLU 74 CD 10 1 Y 1 A GLU 62 ? OE1 ? A GLU 74 OE1 11 1 Y 1 A GLU 62 ? OE2 ? A GLU 74 OE2 12 1 Y 1 A ARG 89 ? NE ? A ARG 101 NE 13 1 Y 1 A ARG 89 ? CZ ? A ARG 101 CZ 14 1 Y 1 A ARG 89 ? NH1 ? A ARG 101 NH1 15 1 Y 1 A ARG 89 ? NH2 ? A ARG 101 NH2 16 1 Y 1 A LYS 97 ? CG ? A LYS 109 CG 17 1 Y 1 A LYS 97 ? CD ? A LYS 109 CD 18 1 Y 1 A LYS 97 ? CE ? A LYS 109 CE 19 1 Y 1 A LYS 97 ? NZ ? A LYS 109 NZ 20 1 Y 1 A TYR 98 ? CD1 ? A TYR 110 CD1 21 1 Y 1 A TYR 98 ? CD2 ? A TYR 110 CD2 22 1 Y 1 A TYR 98 ? CE1 ? A TYR 110 CE1 23 1 Y 1 A TYR 98 ? CE2 ? A TYR 110 CE2 24 1 Y 1 A TYR 98 ? CZ ? A TYR 110 CZ 25 1 Y 1 A TYR 98 ? OH ? A TYR 110 OH 26 1 Y 1 B ILE -6 ? CG1 ? B ILE 6 CG1 27 1 Y 1 B ILE -6 ? CG2 ? B ILE 6 CG2 28 1 Y 1 B ILE -6 ? CD1 ? B ILE 6 CD1 29 1 Y 1 B GLU 55 ? CG ? B GLU 67 CG 30 1 Y 1 B GLU 55 ? CD ? B GLU 67 CD 31 1 Y 1 B GLU 55 ? OE1 ? B GLU 67 OE1 32 1 Y 1 B GLU 55 ? OE2 ? B GLU 67 OE2 33 1 Y 1 B ARG 56 ? CG ? B ARG 68 CG 34 1 Y 1 B ARG 56 ? CD ? B ARG 68 CD 35 1 Y 1 B ARG 56 ? NE ? B ARG 68 NE 36 1 Y 1 B ARG 56 ? CZ ? B ARG 68 CZ 37 1 Y 1 B ARG 56 ? NH1 ? B ARG 68 NH1 38 1 Y 1 B ARG 56 ? NH2 ? B ARG 68 NH2 39 1 Y 1 B LYS 88 ? CE ? B LYS 100 CE 40 1 Y 1 B LYS 88 ? NZ ? B LYS 100 NZ 41 1 Y 1 B LYS 97 ? CG ? B LYS 109 CG 42 1 Y 1 B LYS 97 ? CD ? B LYS 109 CD 43 1 Y 1 B LYS 97 ? CE ? B LYS 109 CE 44 1 Y 1 B LYS 97 ? NZ ? B LYS 109 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -11 ? A MSE 1 2 1 Y 1 A GLY -10 ? A GLY 2 3 1 Y 1 A SER -9 ? A SER 3 4 1 Y 1 A ASP -8 ? A ASP 4 5 1 Y 1 A ASN 101 ? A ASN 113 6 1 Y 1 A ARG 102 ? A ARG 114 7 1 Y 1 A VAL 103 ? A VAL 115 8 1 Y 1 A HIS 104 ? A HIS 116 9 1 Y 1 A GLU 105 ? A GLU 117 10 1 Y 1 A PHE 106 ? A PHE 118 11 1 Y 1 B MSE -11 ? B MSE 1 12 1 Y 1 B GLY -10 ? B GLY 2 13 1 Y 1 B SER -9 ? B SER 3 14 1 Y 1 B ASP -8 ? B ASP 4 15 1 Y 1 B LYS -7 ? B LYS 5 16 1 Y 1 B ASN 101 ? B ASN 113 17 1 Y 1 B ARG 102 ? B ARG 114 18 1 Y 1 B VAL 103 ? B VAL 115 19 1 Y 1 B HIS 104 ? B HIS 116 20 1 Y 1 B GLU 105 ? B GLU 117 21 1 Y 1 B PHE 106 ? B PHE 118 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'CHLORIDE ION' CL 4 'TETRAETHYLENE GLYCOL' PG4 5 'TRIETHYLENE GLYCOL' PGE 6 'SODIUM ION' NA 7 water HOH # loop_ _pdbx_reflns_twin.domain_id _pdbx_reflns_twin.crystal_id _pdbx_reflns_twin.diffrn_id _pdbx_reflns_twin.fraction _pdbx_reflns_twin.operator _pdbx_reflns_twin.type _pdbx_reflns_twin.mean_F_square_over_mean_F2 _pdbx_reflns_twin.mean_I2_over_mean_I_square 1 1 1 0.706 'H, K, L' ? ? ? 2 1 1 0.294 '-H, L, K' ? ? ? #