HEADER HYDROLASE 23-MAY-14 4QGP TITLE CRYSTAL STRUCTURE OF A PYROPHOSPHATASE (AF1178) FROM ARCHAEOGLOBUS TITLE 2 FULGIDUS DSM 4304 AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYROPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 224325; SOURCE 4 STRAIN: DSM 4304; SOURCE 5 GENE: AF_1178; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MH4A KEYWDS DIMERIC FOUR ALPHA-HELICAL BUNDLE, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 3 24-JAN-18 4QGP 1 JRNL REVDAT 2 22-NOV-17 4QGP 1 REMARK REVDAT 1 02-JUL-14 4QGP 0 SPRSDE 02-JUL-14 4QGP 3OBC JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PYROPHOSPHATASE (AF1178) FROM JRNL TITL 2 ARCHAEOGLOBUS FULGIDUS DSM 4304 AT 1.80 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 24325 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1230 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1089 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 61.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1785 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -20.86000 REMARK 3 B22 (A**2) : 4.07000 REMARK 3 B33 (A**2) : 16.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.027 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.027 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.006 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1923 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2609 ; 1.406 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 241 ; 4.823 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;31.027 ;23.900 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 351 ;14.058 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.081 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 289 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1443 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 886 ; 1.875 ; 2.787 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1111 ; 2.480 ; 5.202 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1034 ; 3.074 ; 3.422 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.706 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H, L, K REMARK 3 TWIN FRACTION : 0.294 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -7 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3829 7.9754 13.3497 REMARK 3 T TENSOR REMARK 3 T11: 0.1416 T22: 0.1022 REMARK 3 T33: 0.0130 T12: -0.0081 REMARK 3 T13: 0.0064 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.6001 L22: 0.5253 REMARK 3 L33: 0.5806 L12: 0.0577 REMARK 3 L13: 0.0050 L23: -0.1499 REMARK 3 S TENSOR REMARK 3 S11: -0.0162 S12: 0.0607 S13: 0.0739 REMARK 3 S21: -0.1050 S22: 0.0431 S23: -0.0097 REMARK 3 S31: -0.0672 S32: 0.0247 S33: -0.0269 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -6 B 100 REMARK 3 ORIGIN FOR THE GROUP (A): 6.7499 10.8011 16.5581 REMARK 3 T TENSOR REMARK 3 T11: 0.1286 T22: 0.0867 REMARK 3 T33: 0.0041 T12: 0.0040 REMARK 3 T13: -0.0054 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.9651 L22: 0.4843 REMARK 3 L33: 0.4417 L12: 0.1402 REMARK 3 L13: -0.1113 L23: -0.2177 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: 0.0541 S13: 0.0002 REMARK 3 S21: -0.0519 S22: 0.0101 S23: 0.0199 REMARK 3 S31: -0.0402 S32: -0.0235 S33: -0.0217 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. MAGNESIUM (MG), CHLORIDE (CL), AND POLYETHYLENE REMARK 3 GLYCOL 200 FRAGMENTS (PG4 AND PGE) FROM THE CRYSTALLIZATION/CRYO REMARK 3 CONDITIONS ARE MODELED INTO THE STRUCTURE. 4. THE DIFFRACTION REMARK 3 DATA ARE PSEUDO-MEROHEDRALLY TWINNED WITH TWIN LAW (-H, L, K). REMARK 3 THE REFINED TWIN FRACTION WAS 0.30. 6. REFLECTIONS FOR THE FREE- REMARK 3 R SET WERE SELECTED BY RANDOM EXPANDED BY THE TWIN LAW. 7. NCS REMARK 3 RESTRAINTS WERE APPLIED USING REFMAC'S LOCAL NCS OPT REMARK 4 REMARK 4 4QGP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000086032. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97954 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE JANUARY 30, 2009 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24327 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 28.202 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.60500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 63.0% POLYETHYLENE GLYCOL 200, 0.2M REMARK 280 MAGNESIUM CHLORIDE, 0.1M SODIUM CACODYLATE PH 6.0, NANODROP, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.58400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.64250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.06800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.64250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.58400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.06800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.58400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.06800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.64250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.06800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.58400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.64250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -208.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 51.64250 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 336 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 338 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 349 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 ASN A 101 REMARK 465 ARG A 102 REMARK 465 VAL A 103 REMARK 465 HIS A 104 REMARK 465 GLU A 105 REMARK 465 PHE A 106 REMARK 465 MSE B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ASN B 101 REMARK 465 ARG B 102 REMARK 465 VAL B 103 REMARK 465 HIS B 104 REMARK 465 GLU B 105 REMARK 465 PHE B 106 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A -7 CG CD CE NZ REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 GLU A 62 CD OE1 OE2 REMARK 470 ARG A 89 NE CZ NH1 NH2 REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 TYR A 98 CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE B -6 CG1 CG2 CD1 REMARK 470 GLU B 55 CG CD OE1 OE2 REMARK 470 ARG B 56 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 88 CE NZ REMARK 470 LYS B 97 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 98 76.13 -117.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 36 OE1 REMARK 620 2 ASP B 67 OD2 175.2 REMARK 620 3 GLU B 33 OE1 87.7 92.0 REMARK 620 4 GLU B 64 OE1 86.9 88.3 91.3 REMARK 620 5 HOH B 304 O 92.1 92.7 89.2 178.9 REMARK 620 6 HOH B 302 O 90.7 89.8 177.5 90.5 89.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 36 OE1 REMARK 620 2 GLU A 33 OE1 87.9 REMARK 620 3 ASP A 67 OD2 177.4 93.6 REMARK 620 4 GLU A 64 OE1 90.6 93.1 91.5 REMARK 620 5 HOH A 302 O 89.5 170.7 88.7 95.9 REMARK 620 6 HOH A 305 O 86.6 91.0 91.2 175.0 79.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 205 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PG4 B 202 O5 REMARK 620 2 PG4 B 202 O4 53.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 204 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PGE B 203 O2 REMARK 620 2 PGE B 203 O1 53.0 REMARK 620 3 HOH B 335 O 147.9 113.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-356701 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 1-106) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHH. DBREF 4QGP A 1 106 UNP O29089 O29089_ARCFU 1 106 DBREF 4QGP B 1 106 UNP O29089 O29089_ARCFU 1 106 SEQADV 4QGP MSE A -11 UNP O29089 EXPRESSION TAG SEQADV 4QGP GLY A -10 UNP O29089 EXPRESSION TAG SEQADV 4QGP SER A -9 UNP O29089 EXPRESSION TAG SEQADV 4QGP ASP A -8 UNP O29089 EXPRESSION TAG SEQADV 4QGP LYS A -7 UNP O29089 EXPRESSION TAG SEQADV 4QGP ILE A -6 UNP O29089 EXPRESSION TAG SEQADV 4QGP HIS A -5 UNP O29089 EXPRESSION TAG SEQADV 4QGP HIS A -4 UNP O29089 EXPRESSION TAG SEQADV 4QGP HIS A -3 UNP O29089 EXPRESSION TAG SEQADV 4QGP HIS A -2 UNP O29089 EXPRESSION TAG SEQADV 4QGP HIS A -1 UNP O29089 EXPRESSION TAG SEQADV 4QGP HIS A 0 UNP O29089 EXPRESSION TAG SEQADV 4QGP MSE B -11 UNP O29089 EXPRESSION TAG SEQADV 4QGP GLY B -10 UNP O29089 EXPRESSION TAG SEQADV 4QGP SER B -9 UNP O29089 EXPRESSION TAG SEQADV 4QGP ASP B -8 UNP O29089 EXPRESSION TAG SEQADV 4QGP LYS B -7 UNP O29089 EXPRESSION TAG SEQADV 4QGP ILE B -6 UNP O29089 EXPRESSION TAG SEQADV 4QGP HIS B -5 UNP O29089 EXPRESSION TAG SEQADV 4QGP HIS B -4 UNP O29089 EXPRESSION TAG SEQADV 4QGP HIS B -3 UNP O29089 EXPRESSION TAG SEQADV 4QGP HIS B -2 UNP O29089 EXPRESSION TAG SEQADV 4QGP HIS B -1 UNP O29089 EXPRESSION TAG SEQADV 4QGP HIS B 0 UNP O29089 EXPRESSION TAG SEQRES 1 A 118 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 118 GLU GLU LEU LEU ASP ILE LEU ARG GLU PHE ARG ASP SER SEQRES 3 A 118 ARG GLY TRP LEU LYS TYR HIS THR PRO LYS ASN LEU ALA SEQRES 4 A 118 VAL SER ILE SER ILE GLU VAL ALA GLU LEU LEU GLU ILE SEQRES 5 A 118 PHE GLN TRP THR ARG SER SER ASP GLU GLU PHE GLU VAL SEQRES 6 A 118 LEU GLU ARG ARG LYS GLY GLU VAL GLU GLU GLU ILE ALA SEQRES 7 A 118 ASP VAL LEU ILE TYR LEU LEU PHE LEU CYS ASP VAL ALA SEQRES 8 A 118 GLU ILE ASN PRO ILE GLU ALA VAL LYS ARG LYS MSE GLU SEQRES 9 A 118 LYS ASN GLU ARG LYS TYR PRO LYS ASN ARG VAL HIS GLU SEQRES 10 A 118 PHE SEQRES 1 B 118 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 B 118 GLU GLU LEU LEU ASP ILE LEU ARG GLU PHE ARG ASP SER SEQRES 3 B 118 ARG GLY TRP LEU LYS TYR HIS THR PRO LYS ASN LEU ALA SEQRES 4 B 118 VAL SER ILE SER ILE GLU VAL ALA GLU LEU LEU GLU ILE SEQRES 5 B 118 PHE GLN TRP THR ARG SER SER ASP GLU GLU PHE GLU VAL SEQRES 6 B 118 LEU GLU ARG ARG LYS GLY GLU VAL GLU GLU GLU ILE ALA SEQRES 7 B 118 ASP VAL LEU ILE TYR LEU LEU PHE LEU CYS ASP VAL ALA SEQRES 8 B 118 GLU ILE ASN PRO ILE GLU ALA VAL LYS ARG LYS MSE GLU SEQRES 9 B 118 LYS ASN GLU ARG LYS TYR PRO LYS ASN ARG VAL HIS GLU SEQRES 10 B 118 PHE MODRES 4QGP MSE A 1 MET SELENOMETHIONINE MODRES 4QGP MSE A 91 MET SELENOMETHIONINE MODRES 4QGP MSE B 1 MET SELENOMETHIONINE MODRES 4QGP MSE B 91 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 91 8 HET MSE B 1 8 HET MSE B 91 8 HET MG A 201 1 HET CL A 202 1 HET MG B 201 1 HET PG4 B 202 13 HET PGE B 203 10 HET NA B 204 1 HET NA B 205 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PGE TRIETHYLENE GLYCOL HETNAM NA SODIUM ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 MG 2(MG 2+) FORMUL 4 CL CL 1- FORMUL 6 PG4 C8 H18 O5 FORMUL 7 PGE C6 H14 O4 FORMUL 8 NA 2(NA 1+) FORMUL 10 HOH *103(H2 O) HELIX 1 1 HIS A 0 ARG A 15 1 16 HELIX 2 2 TRP A 17 HIS A 21 5 5 HELIX 3 3 THR A 22 PHE A 41 1 20 HELIX 4 4 SER A 46 ARG A 57 1 12 HELIX 5 5 ARG A 57 GLU A 80 1 24 HELIX 6 6 ASN A 82 TYR A 98 1 17 HELIX 7 7 HIS B -1 ARG B 15 1 17 HELIX 8 8 TRP B 17 HIS B 21 5 5 HELIX 9 9 THR B 22 PHE B 41 1 20 HELIX 10 10 SER B 46 ARG B 57 1 12 HELIX 11 11 ARG B 57 GLU B 80 1 24 HELIX 12 12 ASN B 82 TYR B 98 1 17 SHEET 1 A 2 HIS A -4 HIS A -1 0 SHEET 2 A 2 HIS B -5 HIS B -2 1 O HIS B -4 N HIS A -2 LINK C HIS A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N GLU A 2 1555 1555 1.33 LINK C LYS A 90 N MSE A 91 1555 1555 1.34 LINK C MSE A 91 N GLU A 92 1555 1555 1.33 LINK C HIS B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N GLU B 2 1555 1555 1.33 LINK C LYS B 90 N MSE B 91 1555 1555 1.34 LINK C MSE B 91 N GLU B 92 1555 1555 1.34 LINK OE1 GLU B 36 MG MG B 201 1555 1555 2.02 LINK OE1 GLU A 36 MG MG A 201 1555 1555 2.02 LINK OE1 GLU A 33 MG MG A 201 1555 1555 2.04 LINK OD2 ASP A 67 MG MG A 201 1555 1555 2.04 LINK OD2 ASP B 67 MG MG B 201 1555 1555 2.04 LINK OE1 GLU B 33 MG MG B 201 1555 1555 2.04 LINK OE1 GLU A 64 MG MG A 201 1555 1555 2.08 LINK OE1 GLU B 64 MG MG B 201 1555 1555 2.19 LINK O5 PG4 B 202 NA NA B 205 1555 1555 2.88 LINK O4 PG4 B 202 NA NA B 205 1555 1555 3.10 LINK O2 PGE B 203 NA NA B 204 1555 1555 3.13 LINK O1 PGE B 203 NA NA B 204 1555 1555 3.15 LINK MG MG B 201 O HOH B 304 1555 1555 1.95 LINK MG MG B 201 O HOH B 302 1555 1555 2.15 LINK MG MG A 201 O HOH A 302 1555 1555 2.16 LINK MG MG A 201 O HOH A 305 1555 1555 2.39 LINK NA NA B 204 O HOH B 335 1555 1555 2.75 SITE 1 AC1 6 GLU A 33 GLU A 36 GLU A 64 ASP A 67 SITE 2 AC1 6 HOH A 302 HOH A 305 SITE 1 AC2 5 HIS A -1 MSE A 1 GLU A 2 HIS B 0 SITE 2 AC2 5 HOH B 328 SITE 1 AC3 6 GLU B 33 GLU B 36 GLU B 64 ASP B 67 SITE 2 AC3 6 HOH B 302 HOH B 304 SITE 1 AC4 6 LEU A 18 LYS A 19 HIS A 21 SER B 47 SITE 2 AC4 6 PHE B 51 NA B 205 SITE 1 AC5 5 PHE A 51 LEU B 18 LYS B 19 HIS B 21 SITE 2 AC5 5 NA B 204 SITE 1 AC6 2 PGE B 203 HOH B 335 SITE 1 AC7 1 PG4 B 202 CRYST1 49.168 102.136 103.285 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020338 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009791 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009682 0.00000