HEADER TRANSFERASE 23-MAY-14 4QGR TITLE CRYSTAL STRUCTURE OF A DEGT DNRJ ERYC1 STRS AMINOTRANSFERASE FROM TITLE 2 BRUCELLA ABORTUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEGT/DNRJ/ERYC1/STRS AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA ABORTUS 2308; SOURCE 3 ORGANISM_TAXID: 359391; SOURCE 4 STRAIN: 2308; SOURCE 5 GENE: BAB1_1616; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PBG1861 KEYWDS NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES, NIAID, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 3 STRUCTURAL GENOMICS, AMINO TRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 20-SEP-23 4QGR 1 REMARK SEQADV LINK REVDAT 1 18-JUN-14 4QGR 0 JRNL AUTH T.E.EDWARDS,J.W.FAIRMAN,J.J.LETESSON, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL TITL CRYSTAL STRUCTURE OF A DEGT DNRJ ERYC1 STRS FAMILY PROTEIN JRNL TITL 2 FROM BARTONELLA ABORTUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 74272 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3688 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5165 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 287 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5660 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 714 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -1.38000 REMARK 3 B33 (A**2) : 1.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.764 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5865 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5597 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7982 ; 1.461 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12857 ; 0.811 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 768 ; 5.716 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 257 ;32.425 ;24.086 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 935 ;11.827 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;17.349 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 895 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6781 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1306 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3018 ; 0.833 ; 1.324 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3015 ; 0.824 ; 1.322 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3772 ; 1.335 ; 1.978 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 373 REMARK 3 ORIGIN FOR THE GROUP (A): 24.9151 35.4566 85.9463 REMARK 3 T TENSOR REMARK 3 T11: 0.0117 T22: 0.0064 REMARK 3 T33: 0.0737 T12: 0.0044 REMARK 3 T13: -0.0021 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.3916 L22: 0.7327 REMARK 3 L33: 0.4580 L12: -0.0381 REMARK 3 L13: -0.0281 L23: 0.1144 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: -0.0203 S13: 0.0374 REMARK 3 S21: 0.0604 S22: 0.0127 S23: 0.0415 REMARK 3 S31: -0.0051 S32: -0.0417 S33: -0.0038 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 372 REMARK 3 ORIGIN FOR THE GROUP (A): 31.1639 28.0371 52.6669 REMARK 3 T TENSOR REMARK 3 T11: 0.0994 T22: 0.1292 REMARK 3 T33: 0.0499 T12: -0.0141 REMARK 3 T13: 0.0453 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 0.9590 L22: 0.5352 REMARK 3 L33: 0.7494 L12: -0.1351 REMARK 3 L13: 0.1118 L23: 0.2639 REMARK 3 S TENSOR REMARK 3 S11: 0.0121 S12: 0.3344 S13: -0.0393 REMARK 3 S21: -0.2038 S22: 0.0067 S23: -0.1286 REMARK 3 S31: -0.0630 S32: 0.0667 S33: -0.0187 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4QGR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000086034. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12709 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74295 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 3NU7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BRABA.17333.A.B1.PS02033 AT 20 MG/ML REMARK 280 AGAINST MCSG-1 SCREEN CONDITION F2 0.2 M AMMONIUM ACETATE, 0.1 M REMARK 280 BISTRIS HCL PH 6.5, 25% PEG 3350 SUPPLEMENTED WITH 25% ETHYLENE REMARK 280 GLYCOL AS CRYO-PROTECTANT, CRYSTAL TRACKING ID 254589F2, UNIQUE REMARK 280 PUCK ID XRF9-6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.03000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 ALA A 374 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 LYS B 373 REMARK 465 ALA B 374 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -2 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 GLN A 225 CG CD OE1 NE2 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 LYS A 373 CG CD CE NZ REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 ARG B 147 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 170 CG CD CE NZ REMARK 470 ASN B 173 CG OD1 ND2 REMARK 470 LYS B 221 CG CD CE NZ REMARK 470 GLU B 278 CG CD OE1 OE2 REMARK 470 GLU B 295 CG CD OE1 OE2 REMARK 470 LYS B 372 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 740 O HOH B 741 2.07 REMARK 500 O HOH A 687 O HOH A 867 2.10 REMARK 500 O HOH A 805 O HOH A 867 2.15 REMARK 500 O HOH B 605 O HOH B 713 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 60 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 29 68.00 -108.66 REMARK 500 CYS A 195 -166.58 -102.87 REMARK 500 ASN A 296 58.73 38.04 REMARK 500 ARG B 29 69.88 -107.31 REMARK 500 MET B 110 123.85 -37.47 REMARK 500 PHE B 139 14.03 58.35 REMARK 500 ALA B 143 -179.94 -69.08 REMARK 500 ALA B 163 33.22 -99.14 REMARK 500 CYS B 195 -166.42 -106.18 REMARK 500 TYR B 196 52.34 -111.70 REMARK 500 ASN B 296 53.72 39.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 512 O REMARK 620 2 HOH A 514 O 90.8 REMARK 620 3 HOH A 529 O 95.0 85.9 REMARK 620 4 HOH B 508 O 88.5 174.8 89.0 REMARK 620 5 HOH B 509 O 85.3 92.4 178.2 92.7 REMARK 620 6 HOH B 514 O 172.7 95.2 89.5 85.9 90.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BRABA.17333.A RELATED DB: TARGETTRACK DBREF 4QGR A 1 374 UNP Q2YRB9 Q2YRB9_BRUA2 1 374 DBREF 4QGR B 1 374 UNP Q2YRB9 Q2YRB9_BRUA2 1 374 SEQADV 4QGR MET A -7 UNP Q2YRB9 EXPRESSION TAG SEQADV 4QGR ALA A -6 UNP Q2YRB9 EXPRESSION TAG SEQADV 4QGR HIS A -5 UNP Q2YRB9 EXPRESSION TAG SEQADV 4QGR HIS A -4 UNP Q2YRB9 EXPRESSION TAG SEQADV 4QGR HIS A -3 UNP Q2YRB9 EXPRESSION TAG SEQADV 4QGR HIS A -2 UNP Q2YRB9 EXPRESSION TAG SEQADV 4QGR HIS A -1 UNP Q2YRB9 EXPRESSION TAG SEQADV 4QGR HIS A 0 UNP Q2YRB9 EXPRESSION TAG SEQADV 4QGR MET B -7 UNP Q2YRB9 EXPRESSION TAG SEQADV 4QGR ALA B -6 UNP Q2YRB9 EXPRESSION TAG SEQADV 4QGR HIS B -5 UNP Q2YRB9 EXPRESSION TAG SEQADV 4QGR HIS B -4 UNP Q2YRB9 EXPRESSION TAG SEQADV 4QGR HIS B -3 UNP Q2YRB9 EXPRESSION TAG SEQADV 4QGR HIS B -2 UNP Q2YRB9 EXPRESSION TAG SEQADV 4QGR HIS B -1 UNP Q2YRB9 EXPRESSION TAG SEQADV 4QGR HIS B 0 UNP Q2YRB9 EXPRESSION TAG SEQRES 1 A 382 MET ALA HIS HIS HIS HIS HIS HIS MET GLN PHE ILE ASP SEQRES 2 A 382 LEU GLY ALA GLN ARG ALA ARG ILE GLU ASN ARG LEU ASN SEQRES 3 A 382 ALA ALA ILE SER LYS VAL VAL ALA GLU GLY ARG TYR ILE SEQRES 4 A 382 LEU GLY PRO GLU VAL ALA GLU PHE GLU LYS LYS LEU GLY SEQRES 5 A 382 GLU TYR LEU GLY VAL GLU HIS VAL ILE ALA CYS ALA ASN SEQRES 6 A 382 GLY THR ASP ALA LEU GLN MET PRO LEU MET THR ARG GLY SEQRES 7 A 382 ILE GLY PRO GLY HIS ALA VAL PHE VAL PRO SER PHE THR SEQRES 8 A 382 PHE ALA ALA THR ALA GLU VAL VAL ALA LEU VAL GLY ALA SEQRES 9 A 382 GLU PRO VAL PHE VAL ASP VAL ASP PRO ASP SER TYR ASN SEQRES 10 A 382 MET ASN VAL GLU GLN LEU GLU ALA ALA ILE ALA ALA THR SEQRES 11 A 382 ILE LYS GLU GLY ARG LEU GLU PRO LYS ALA ILE ILE PRO SEQRES 12 A 382 VAL ASP LEU PHE GLY LEU ALA ALA SER TYR ASN ARG ILE SEQRES 13 A 382 THR ALA ILE ALA GLU ARG GLU GLY LEU PHE ILE ILE GLU SEQRES 14 A 382 ASP ALA ALA GLN SER ILE GLY GLY LYS ARG ASP ASN VAL SEQRES 15 A 382 MET CYS GLY ALA PHE GLY HIS VAL GLY ALA THR SER PHE SEQRES 16 A 382 TYR PRO ALA LYS PRO LEU GLY CYS TYR GLY ASP GLY GLY SEQRES 17 A 382 ALA MET PHE THR ASN ASP ALA GLU LEU ALA ASP THR LEU SEQRES 18 A 382 ARG SER VAL LEU PHE HIS GLY LYS GLY GLU THR GLN TYR SEQRES 19 A 382 ASP ASN VAL ARG ILE GLY ILE ASN SER ARG LEU ASP THR SEQRES 20 A 382 ILE GLN ALA ALA VAL LEU LEU GLU LYS LEU ALA ILE LEU SEQRES 21 A 382 GLU ASP GLU MET GLU ALA ARG ASP ARG ILE ALA ARG ARG SEQRES 22 A 382 TYR ASN GLU ALA LEU LYS ASP VAL VAL LYS VAL PRO GLU SEQRES 23 A 382 LEU PRO ALA GLY ASN ARG SER ALA TRP ALA GLN TYR SER SEQRES 24 A 382 ILE GLU SER GLU ASN ARG ASP GLY LEU LYS ALA GLN LEU SEQRES 25 A 382 GLN ALA GLU GLY ILE PRO SER VAL ILE TYR TYR VAL LYS SEQRES 26 A 382 PRO LEU HIS LEU GLN THR ALA TYR LYS HIS TYR SER VAL SEQRES 27 A 382 ALA PRO GLY GLY LEU PRO VAL SER GLU SER LEU PRO SER SEQRES 28 A 382 ARG ILE LEU SER LEU PRO MET HIS PRO TYR LEU SER GLU SEQRES 29 A 382 ALA ASP GLN ASP LYS ILE ILE GLY VAL ILE ARG GLY PHE SEQRES 30 A 382 HIS GLY LYS LYS ALA SEQRES 1 B 382 MET ALA HIS HIS HIS HIS HIS HIS MET GLN PHE ILE ASP SEQRES 2 B 382 LEU GLY ALA GLN ARG ALA ARG ILE GLU ASN ARG LEU ASN SEQRES 3 B 382 ALA ALA ILE SER LYS VAL VAL ALA GLU GLY ARG TYR ILE SEQRES 4 B 382 LEU GLY PRO GLU VAL ALA GLU PHE GLU LYS LYS LEU GLY SEQRES 5 B 382 GLU TYR LEU GLY VAL GLU HIS VAL ILE ALA CYS ALA ASN SEQRES 6 B 382 GLY THR ASP ALA LEU GLN MET PRO LEU MET THR ARG GLY SEQRES 7 B 382 ILE GLY PRO GLY HIS ALA VAL PHE VAL PRO SER PHE THR SEQRES 8 B 382 PHE ALA ALA THR ALA GLU VAL VAL ALA LEU VAL GLY ALA SEQRES 9 B 382 GLU PRO VAL PHE VAL ASP VAL ASP PRO ASP SER TYR ASN SEQRES 10 B 382 MET ASN VAL GLU GLN LEU GLU ALA ALA ILE ALA ALA THR SEQRES 11 B 382 ILE LYS GLU GLY ARG LEU GLU PRO LYS ALA ILE ILE PRO SEQRES 12 B 382 VAL ASP LEU PHE GLY LEU ALA ALA SER TYR ASN ARG ILE SEQRES 13 B 382 THR ALA ILE ALA GLU ARG GLU GLY LEU PHE ILE ILE GLU SEQRES 14 B 382 ASP ALA ALA GLN SER ILE GLY GLY LYS ARG ASP ASN VAL SEQRES 15 B 382 MET CYS GLY ALA PHE GLY HIS VAL GLY ALA THR SER PHE SEQRES 16 B 382 TYR PRO ALA LYS PRO LEU GLY CYS TYR GLY ASP GLY GLY SEQRES 17 B 382 ALA MET PHE THR ASN ASP ALA GLU LEU ALA ASP THR LEU SEQRES 18 B 382 ARG SER VAL LEU PHE HIS GLY LYS GLY GLU THR GLN TYR SEQRES 19 B 382 ASP ASN VAL ARG ILE GLY ILE ASN SER ARG LEU ASP THR SEQRES 20 B 382 ILE GLN ALA ALA VAL LEU LEU GLU LYS LEU ALA ILE LEU SEQRES 21 B 382 GLU ASP GLU MET GLU ALA ARG ASP ARG ILE ALA ARG ARG SEQRES 22 B 382 TYR ASN GLU ALA LEU LYS ASP VAL VAL LYS VAL PRO GLU SEQRES 23 B 382 LEU PRO ALA GLY ASN ARG SER ALA TRP ALA GLN TYR SER SEQRES 24 B 382 ILE GLU SER GLU ASN ARG ASP GLY LEU LYS ALA GLN LEU SEQRES 25 B 382 GLN ALA GLU GLY ILE PRO SER VAL ILE TYR TYR VAL LYS SEQRES 26 B 382 PRO LEU HIS LEU GLN THR ALA TYR LYS HIS TYR SER VAL SEQRES 27 B 382 ALA PRO GLY GLY LEU PRO VAL SER GLU SER LEU PRO SER SEQRES 28 B 382 ARG ILE LEU SER LEU PRO MET HIS PRO TYR LEU SER GLU SEQRES 29 B 382 ALA ASP GLN ASP LYS ILE ILE GLY VAL ILE ARG GLY PHE SEQRES 30 B 382 HIS GLY LYS LYS ALA HET MG A 401 1 HET ACT A 402 4 HET PLP A 403 16 HET ACT B 401 4 HET PLP B 402 16 HETNAM MG MAGNESIUM ION HETNAM ACT ACETATE ION HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 MG MG 2+ FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 5 PLP 2(C8 H10 N O6 P) FORMUL 8 HOH *714(H2 O) HELIX 1 1 ASP A 5 ILE A 13 1 9 HELIX 2 2 ILE A 13 GLY A 28 1 16 HELIX 3 3 GLY A 33 GLY A 48 1 16 HELIX 4 4 THR A 59 ARG A 69 1 11 HELIX 5 5 ALA A 85 VAL A 94 1 10 HELIX 6 6 ASN A 111 GLY A 126 1 16 HELIX 7 7 ASP A 137 LEU A 141 5 5 HELIX 8 8 SER A 144 GLY A 156 1 13 HELIX 9 9 ASP A 206 LEU A 217 1 12 HELIX 10 10 ASP A 238 LYS A 271 1 34 HELIX 11 11 ASN A 296 GLU A 307 1 12 HELIX 12 12 PRO A 318 GLN A 322 5 5 HELIX 13 13 LEU A 335 LEU A 341 1 7 HELIX 14 14 SER A 355 HIS A 370 1 16 HELIX 15 15 ASP B 5 ILE B 13 1 9 HELIX 16 16 ILE B 13 GLY B 28 1 16 HELIX 17 17 GLY B 33 GLY B 48 1 16 HELIX 18 18 THR B 59 ARG B 69 1 11 HELIX 19 19 ALA B 85 VAL B 94 1 10 HELIX 20 20 ASN B 111 GLY B 126 1 16 HELIX 21 21 ASP B 137 LEU B 141 5 5 HELIX 22 22 SER B 144 GLY B 156 1 13 HELIX 23 23 ASP B 206 LEU B 217 1 12 HELIX 24 24 ASP B 238 LYS B 271 1 34 HELIX 25 25 ASN B 296 GLU B 307 1 12 HELIX 26 26 PRO B 318 GLN B 322 5 5 HELIX 27 27 LEU B 335 LEU B 341 1 7 HELIX 28 28 SER B 355 HIS B 370 1 16 SHEET 1 A 8 HIS A 51 CYS A 55 0 SHEET 2 A 8 GLY A 200 THR A 204 -1 O MET A 202 N ILE A 53 SHEET 3 A 8 VAL A 182 SER A 186 -1 N THR A 185 O ALA A 201 SHEET 4 A 8 PHE A 158 ASP A 162 1 N GLU A 161 O VAL A 182 SHEET 5 A 8 GLU A 129 ILE A 133 1 N ILE A 133 O PHE A 158 SHEET 6 A 8 HIS A 75 PRO A 80 1 N ALA A 76 O LYS A 131 SHEET 7 A 8 GLU A 97 VAL A 101 1 O GLU A 97 N HIS A 75 SHEET 8 A 8 SER A 329 VAL A 330 1 O SER A 329 N PHE A 100 SHEET 1 B 3 VAL A 174 MET A 175 0 SHEET 2 B 3 LYS A 170 ARG A 171 -1 N ARG A 171 O VAL A 174 SHEET 3 B 3 ASN A 283 ARG A 284 -1 O ARG A 284 N LYS A 170 SHEET 1 C 2 TYR A 290 GLU A 293 0 SHEET 2 C 2 ILE A 345 LEU A 348 -1 O LEU A 346 N ILE A 292 SHEET 1 D 7 HIS B 51 CYS B 55 0 SHEET 2 D 7 GLY B 200 THR B 204 -1 O MET B 202 N ILE B 53 SHEET 3 D 7 VAL B 182 SER B 186 -1 N GLY B 183 O PHE B 203 SHEET 4 D 7 PHE B 158 ASP B 162 1 N GLU B 161 O VAL B 182 SHEET 5 D 7 GLU B 129 ILE B 133 1 N LYS B 131 O PHE B 158 SHEET 6 D 7 HIS B 75 PRO B 80 1 N PHE B 78 O ALA B 132 SHEET 7 D 7 GLU B 97 VAL B 101 1 O GLU B 97 N HIS B 75 SHEET 1 E 3 VAL B 174 MET B 175 0 SHEET 2 E 3 LYS B 170 ARG B 171 -1 N ARG B 171 O VAL B 174 SHEET 3 E 3 ASN B 283 ARG B 284 -1 O ARG B 284 N LYS B 170 SHEET 1 F 2 TYR B 290 GLU B 293 0 SHEET 2 F 2 ILE B 345 LEU B 348 -1 O LEU B 346 N ILE B 292 LINK MG MG A 401 O HOH A 512 1555 1555 2.06 LINK MG MG A 401 O HOH A 514 1555 1555 2.09 LINK MG MG A 401 O HOH A 529 1555 1555 2.13 LINK MG MG A 401 O HOH B 508 1555 1555 2.17 LINK MG MG A 401 O HOH B 509 1555 1555 2.17 LINK MG MG A 401 O HOH B 514 1555 1555 2.07 CISPEP 1 TYR A 314 TYR A 315 0 9.76 CISPEP 2 TYR B 314 TYR B 315 0 2.82 SITE 1 AC1 6 HOH A 512 HOH A 514 HOH A 529 HOH B 508 SITE 2 AC1 6 HOH B 509 HOH B 514 SITE 1 AC2 5 PHE A 218 ARG A 236 HOH A 908 TYR B 188 SITE 2 AC2 5 PLP B 402 SITE 1 AC3 13 ASN A 57 GLY A 58 THR A 59 PHE A 84 SITE 2 AC3 13 ASP A 162 ALA A 164 GLN A 165 SER A 186 SITE 3 AC3 13 LYS A 191 HOH A 525 HOH A 614 ASN B 234 SITE 4 AC3 13 ACT B 401 SITE 1 AC4 5 TYR A 188 PLP A 403 PHE B 218 ARG B 236 SITE 2 AC4 5 HOH B 773 SITE 1 AC5 13 ASN A 234 ACT A 402 ASN B 57 GLY B 58 SITE 2 AC5 13 THR B 59 PHE B 84 ASP B 162 ALA B 164 SITE 3 AC5 13 GLN B 165 SER B 186 LYS B 191 HOH B 534 SITE 4 AC5 13 HOH B 553 CRYST1 47.690 92.060 86.410 90.00 96.82 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020969 0.000000 0.002507 0.00000 SCALE2 0.000000 0.010862 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011655 0.00000