HEADER IMMUNE SYSTEM 26-MAY-14 4QGY TITLE CAMELID (LLAMA) NANOBODY N25 (VHH) AGAINST TYPE 6 SECRETION SYSTEM TITLE 2 TSSM PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NANOBODY N25, VH DOMAIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_TAXID: 9844; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHEN6 KEYWDS IMMUNOGLOBULIN DOMAIN, PROTEIN RECOGNITION, T6SS TSSM, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR V.S.NGUYEN,A.DESMYTER,T.T.H.LE,E.DURAND,C.KELLENBERGER,B.DOUZI, AUTHOR 2 S.SPINELLI,E.CASCALES,C.CAMBILLAU,A.ROUSSEL REVDAT 4 30-OCT-24 4QGY 1 REMARK REVDAT 3 08-NOV-23 4QGY 1 REMARK REVDAT 2 22-NOV-17 4QGY 1 REMARK REVDAT 1 08-APR-15 4QGY 0 JRNL AUTH V.S.NGUYEN,L.LOGGER,S.SPINELLI,A.DESMYTER,T.T.LE, JRNL AUTH 2 C.KELLENBERGER,B.DOUZI,E.DURAND,A.ROUSSEL,E.CASCALES, JRNL AUTH 3 C.CAMBILLAU JRNL TITL INHIBITION OF TYPE VI SECRETION BY AN ANTI-TSSM LLAMA JRNL TITL 2 NANOBODY. JRNL REF PLOS ONE V. 10 22187 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 25811612 JRNL DOI 10.1371/JOURNAL.PONE.0122187 REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 55416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2813 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.52 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3814 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3221 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3627 REMARK 3 BIN R VALUE (WORKING SET) : 0.3199 REMARK 3 BIN FREE R VALUE : 0.3671 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 187 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1909 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 309 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.46280 REMARK 3 B22 (A**2) : -3.73020 REMARK 3 B33 (A**2) : 2.26740 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.194 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.058 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1967 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2678 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 622 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 39 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 302 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1967 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 254 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2490 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.09 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.85 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.74 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: A 1 A 6 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3334 32.2886 -14.7910 REMARK 3 T TENSOR REMARK 3 T11: -0.0051 T22: -0.0058 REMARK 3 T33: 0.0111 T12: -0.0222 REMARK 3 T13: -0.0013 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.0276 L22: 0.0441 REMARK 3 L33: 0.0190 L12: -0.0371 REMARK 3 L13: -0.0003 L23: -0.0030 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: -0.0001 S13: -0.0006 REMARK 3 S21: 0.0003 S22: -0.0002 S23: 0.0015 REMARK 3 S31: -0.0025 S32: -0.0011 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: A 7 A 36 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2953 22.2225 -16.1628 REMARK 3 T TENSOR REMARK 3 T11: -0.0189 T22: 0.0104 REMARK 3 T33: 0.0024 T12: -0.0346 REMARK 3 T13: -0.0075 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.1565 L22: 0.0517 REMARK 3 L33: 0.2592 L12: -0.2327 REMARK 3 L13: -0.4621 L23: -0.1931 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: 0.0105 S13: 0.0067 REMARK 3 S21: -0.0141 S22: -0.0257 S23: -0.0178 REMARK 3 S31: 0.0093 S32: 0.0012 S33: 0.0244 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: A 37 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5987 20.8014 -0.9016 REMARK 3 T TENSOR REMARK 3 T11: -0.0092 T22: 0.0328 REMARK 3 T33: -0.0225 T12: -0.0200 REMARK 3 T13: -0.0007 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 0.0476 L22: 0.0001 REMARK 3 L33: 0.1050 L12: -0.0503 REMARK 3 L13: 0.0715 L23: -0.0535 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: -0.0050 S13: -0.0008 REMARK 3 S21: 0.0010 S22: 0.0024 S23: -0.0016 REMARK 3 S31: 0.0004 S32: -0.0023 S33: -0.0020 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: A 47 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0226 13.0080 -12.0657 REMARK 3 T TENSOR REMARK 3 T11: -0.0144 T22: -0.0021 REMARK 3 T33: 0.0187 T12: -0.0226 REMARK 3 T13: -0.0012 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 0.2219 L22: 0.0900 REMARK 3 L33: 0.0650 L12: -0.1351 REMARK 3 L13: 0.2305 L23: -0.0707 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: -0.0033 S13: -0.0111 REMARK 3 S21: -0.0052 S22: 0.0027 S23: -0.0004 REMARK 3 S31: 0.0066 S32: 0.0172 S33: -0.0040 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: A 73 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): 3.8927 17.3450 -17.0410 REMARK 3 T TENSOR REMARK 3 T11: 0.0012 T22: -0.0040 REMARK 3 T33: 0.0007 T12: -0.0283 REMARK 3 T13: 0.0090 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.1626 L22: 0.2180 REMARK 3 L33: 0.1179 L12: -0.1126 REMARK 3 L13: 0.0443 L23: 0.2103 REMARK 3 S TENSOR REMARK 3 S11: 0.0029 S12: 0.0070 S13: -0.0024 REMARK 3 S21: -0.0100 S22: -0.0116 S23: -0.0038 REMARK 3 S31: 0.0034 S32: -0.0028 S33: 0.0087 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: A 90 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1685 21.1656 -7.9500 REMARK 3 T TENSOR REMARK 3 T11: -0.0258 T22: 0.0093 REMARK 3 T33: 0.0007 T12: -0.0186 REMARK 3 T13: -0.0099 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 0.5007 L22: 0.2198 REMARK 3 L33: 0.3657 L12: -0.2030 REMARK 3 L13: -0.2100 L23: 0.0034 REMARK 3 S TENSOR REMARK 3 S11: -0.0031 S12: -0.0081 S13: 0.0162 REMARK 3 S21: 0.0282 S22: -0.0120 S23: -0.0196 REMARK 3 S31: 0.0185 S32: 0.0274 S33: 0.0151 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: B 1 B 33 REMARK 3 ORIGIN FOR THE GROUP (A): -13.0986 6.2285 -24.7480 REMARK 3 T TENSOR REMARK 3 T11: 0.0024 T22: -0.0119 REMARK 3 T33: 0.0014 T12: -0.0340 REMARK 3 T13: -0.0144 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.0068 L22: 0.3147 REMARK 3 L33: 0.4360 L12: -0.1818 REMARK 3 L13: -0.1044 L23: -0.2680 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: -0.0172 S13: 0.0029 REMARK 3 S21: -0.0187 S22: -0.0011 S23: 0.0031 REMARK 3 S31: 0.0251 S32: 0.0105 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: B 34 B 62 REMARK 3 ORIGIN FOR THE GROUP (A): -13.1737 11.1054 -34.6676 REMARK 3 T TENSOR REMARK 3 T11: 0.0223 T22: -0.0129 REMARK 3 T33: -0.0148 T12: -0.0199 REMARK 3 T13: -0.0102 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.0669 L22: 0.0161 REMARK 3 L33: 0.3141 L12: 0.2250 REMARK 3 L13: 0.0728 L23: 0.0989 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: 0.0008 S13: -0.0029 REMARK 3 S21: -0.0201 S22: -0.0080 S23: -0.0078 REMARK 3 S31: 0.0042 S32: -0.0143 S33: 0.0105 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: B 63 B 86 REMARK 3 ORIGIN FOR THE GROUP (A): -5.7929 9.7213 -28.2531 REMARK 3 T TENSOR REMARK 3 T11: 0.0123 T22: -0.0102 REMARK 3 T33: -0.0034 T12: -0.0239 REMARK 3 T13: 0.0236 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.3100 L22: 0.0874 REMARK 3 L33: 0.1546 L12: 0.0076 REMARK 3 L13: -0.1314 L23: 0.1398 REMARK 3 S TENSOR REMARK 3 S11: 0.0033 S12: -0.0073 S13: -0.0120 REMARK 3 S21: -0.0130 S22: 0.0032 S23: -0.0050 REMARK 3 S31: -0.0012 S32: 0.0112 S33: -0.0065 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: B 87 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): -15.2964 15.6900 -28.7565 REMARK 3 T TENSOR REMARK 3 T11: 0.0048 T22: -0.0002 REMARK 3 T33: -0.0080 T12: -0.0247 REMARK 3 T13: -0.0274 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.0039 L22: 0.0196 REMARK 3 L33: 0.3315 L12: 0.0153 REMARK 3 L13: 0.3763 L23: -0.1907 REMARK 3 S TENSOR REMARK 3 S11: 0.0021 S12: 0.0053 S13: 0.0115 REMARK 3 S21: -0.0079 S22: -0.0009 S23: -0.0036 REMARK 3 S31: 0.0003 S32: -0.0097 S33: -0.0012 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: B 100 B 109 REMARK 3 ORIGIN FOR THE GROUP (A): -14.2171 3.2574 -42.2478 REMARK 3 T TENSOR REMARK 3 T11: 0.0052 T22: -0.0022 REMARK 3 T33: -0.0014 T12: -0.0024 REMARK 3 T13: 0.0002 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0101 L12: 0.0122 REMARK 3 L13: 0.0064 L23: 0.0019 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: 0.0008 S13: -0.0004 REMARK 3 S21: 0.0005 S22: -0.0003 S23: 0.0007 REMARK 3 S31: 0.0001 S32: -0.0004 S33: 0.0002 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: B 110 B 129 REMARK 3 ORIGIN FOR THE GROUP (A): -18.6890 12.0856 -30.3397 REMARK 3 T TENSOR REMARK 3 T11: -0.0027 T22: 0.0037 REMARK 3 T33: -0.0090 T12: -0.0326 REMARK 3 T13: -0.0483 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.1444 L22: 0.1964 REMARK 3 L33: 0.2336 L12: 0.1031 REMARK 3 L13: 0.2797 L23: -0.2572 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: 0.0023 S13: 0.0114 REMARK 3 S21: -0.0069 S22: 0.0003 S23: 0.0072 REMARK 3 S31: 0.0009 S32: -0.0066 S33: -0.0061 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QGY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000086041. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : KIRKPATRICK-BAEZ PAIR OF BI REMARK 200 -MORPH MIRRORS, CHANNEL CUT REMARK 200 CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55440 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.03100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4HEP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: KNA TARTRATE 1.2M, CHES 0.1M, LI2SO4 REMARK 280 0.2M, PH 9.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.83000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.83000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.99000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.47500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.99000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.47500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.83000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.99000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.47500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.83000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.99000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 35.47500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 103 REMARK 465 ILE B 104 REMARK 465 TYR B 105 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 465 HIS B 133 REMARK 465 HIS B 134 REMARK 465 HIS B 135 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 1 CG CD OE1 NE2 REMARK 470 GLU A 30 CD OE1 OE2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 GLN A 102 CG CD OE1 NE2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 HIS A 130 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 132 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 133 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 1 CG CD OE1 NE2 REMARK 470 ARG B 19 NE CZ NH1 NH2 REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 GLU B 46 CG CD OE1 OE2 REMARK 470 LEU B 54 CG CD1 CD2 REMARK 470 LYS B 74 CD CE NZ REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 TYR B 109 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 121 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 224 O HOH B 226 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 78 CG - SD - CE ANGL. DEV. = -9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 28 98.80 -69.08 REMARK 500 ALA A 92 169.68 175.75 REMARK 500 HIS A 130 59.71 -141.42 REMARK 500 LEU B 54 -70.83 -80.23 REMARK 500 ALA B 92 170.74 175.36 REMARK 500 ILE B 111 46.10 -93.18 REMARK 500 REMARK 500 REMARK: NULL DBREF 4QGY A 1 135 PDB 4QGY 4QGY 1 135 DBREF 4QGY B 1 135 PDB 4QGY 4QGY 1 135 SEQRES 1 A 135 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 135 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 135 PHE THR PHE GLU ASP TYR ALA ILE GLY TRP PHE ARG GLN SEQRES 4 A 135 ALA PRO GLY LYS GLU ARG GLU GLY VAL SER CYS ILE SER SEQRES 5 A 135 ASN LEU ASP GLY SER THR TYR TYR PRO ASP SER VAL LYS SEQRES 6 A 135 GLY ARG PHE THR ALA SER SER ASP LYS ALA LYS ASN MET SEQRES 7 A 135 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 A 135 ALA VAL TYR TYR CYS ALA ALA VAL ASN ALA GLN GLY ILE SEQRES 9 A 135 TYR CYS THR ASP TYR ILE ILE GLY PRO TYR GLY MET ASP SEQRES 10 A 135 TYR TRP GLY LYS GLY THR GLN VAL THR VAL SER SER HIS SEQRES 11 A 135 HIS HIS HIS HIS HIS SEQRES 1 B 135 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 135 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 135 PHE THR PHE GLU ASP TYR ALA ILE GLY TRP PHE ARG GLN SEQRES 4 B 135 ALA PRO GLY LYS GLU ARG GLU GLY VAL SER CYS ILE SER SEQRES 5 B 135 ASN LEU ASP GLY SER THR TYR TYR PRO ASP SER VAL LYS SEQRES 6 B 135 GLY ARG PHE THR ALA SER SER ASP LYS ALA LYS ASN MET SEQRES 7 B 135 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 B 135 ALA VAL TYR TYR CYS ALA ALA VAL ASN ALA GLN GLY ILE SEQRES 9 B 135 TYR CYS THR ASP TYR ILE ILE GLY PRO TYR GLY MET ASP SEQRES 10 B 135 TYR TRP GLY LYS GLY THR GLN VAL THR VAL SER SER HIS SEQRES 11 B 135 HIS HIS HIS HIS HIS FORMUL 3 HOH *309(H2 O) HELIX 1 1 THR A 28 GLU A 30 5 3 HELIX 2 2 LYS A 87 THR A 91 5 5 HELIX 3 3 HIS A 130 HIS A 135 5 6 HELIX 4 4 THR B 28 GLU B 30 5 3 HELIX 5 5 LYS B 74 LYS B 76 5 3 HELIX 6 6 LYS B 87 THR B 91 5 5 HELIX 7 7 GLY B 112 MET B 116 5 5 SHEET 1 A 4 GLN A 3 SER A 7 0 SHEET 2 A 4 LEU A 18 SER A 25 -1 O ALA A 23 N VAL A 5 SHEET 3 A 4 MET A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 A 4 PHE A 68 ASP A 73 -1 N ASP A 73 O MET A 78 SHEET 1 B12 THR A 58 TYR A 59 0 SHEET 2 B12 GLU A 46 SER A 52 -1 N CYS A 50 O TYR A 59 SHEET 3 B12 TYR A 32 GLN A 39 -1 N TRP A 36 O VAL A 48 SHEET 4 B12 ALA A 92 ASN A 100 -1 O VAL A 99 N ALA A 33 SHEET 5 B12 THR A 123 SER A 128 -1 O THR A 123 N TYR A 94 SHEET 6 B12 GLY A 10 GLN A 13 1 N GLY A 10 O THR A 126 SHEET 7 B12 GLY B 10 VAL B 12 -1 O LEU B 11 N LEU A 11 SHEET 8 B12 THR B 123 VAL B 127 1 O THR B 126 N GLY B 10 SHEET 9 B12 ALA B 92 ASN B 100 -1 N TYR B 94 O THR B 123 SHEET 10 B12 TYR B 32 GLN B 39 -1 N ALA B 33 O VAL B 99 SHEET 11 B12 GLU B 46 SER B 52 -1 O VAL B 48 N TRP B 36 SHEET 12 B12 THR B 58 TYR B 59 -1 O TYR B 59 N CYS B 50 SHEET 1 C 8 TYR A 118 TRP A 119 0 SHEET 2 C 8 ALA A 92 ASN A 100 -1 N ALA A 98 O TYR A 118 SHEET 3 C 8 THR A 123 SER A 128 -1 O THR A 123 N TYR A 94 SHEET 4 C 8 GLY A 10 GLN A 13 1 N GLY A 10 O THR A 126 SHEET 5 C 8 GLY B 10 VAL B 12 -1 O LEU B 11 N LEU A 11 SHEET 6 C 8 THR B 123 VAL B 127 1 O THR B 126 N GLY B 10 SHEET 7 C 8 ALA B 92 ASN B 100 -1 N TYR B 94 O THR B 123 SHEET 8 C 8 TYR B 118 TRP B 119 -1 N TYR B 118 O ALA B 98 SHEET 1 D 4 GLN B 3 SER B 7 0 SHEET 2 D 4 LEU B 18 SER B 25 -1 O SER B 21 N SER B 7 SHEET 3 D 4 MET B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 D 4 PHE B 68 ASP B 73 -1 N ASP B 73 O MET B 78 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.08 SSBOND 2 CYS A 50 CYS A 106 1555 1555 2.08 SSBOND 3 CYS B 22 CYS B 96 1555 1555 2.01 SSBOND 4 CYS B 50 CYS B 106 1555 1555 2.06 CRYST1 51.980 70.950 145.660 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019238 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014094 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006865 0.00000