HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 28-MAY-14 4QHO TITLE CRYSTAL STRUCTURE OF THE HUMAN FAT MASS AND OBESITY ASSOCIATED PROTEIN TITLE 2 (FTO) IN COMPLEX WITH CCO10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE FTO; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 32-505; COMPND 5 SYNONYM: FAT MASS AND OBESITY-ASSOCIATED PROTEIN; COMPND 6 EC: 1.14.11.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FTO, KIAA1752; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS JELLY-ROLL MOTIF, OXIDOREDUCTASE, DIOXYGENASE, DOUBLE-STRANDED BETA KEYWDS 2 HELIX FOLD, NUCLEIC ACID DEMETHYLASE, OXIDOREDUCTASE-OXIDOREDUCTASE KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.S.AIK,C.CLUNIE-O'CONNOR,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 4 08-NOV-23 4QHO 1 REMARK REVDAT 3 02-FEB-22 4QHO 1 JRNL REVDAT 2 13-OCT-21 4QHO 1 TITLE JRNL REMARK SEQADV REVDAT 2 2 1 LINK REVDAT 1 03-JUN-15 4QHO 0 JRNL AUTH S.SHISHODIA,M.DEMETRIADES,D.ZHANG,N.Y.TAM,P.MAHESWARAN, JRNL AUTH 2 C.CLUNIE-O'CONNOR,A.TUMBER,I.K.H.LEUNG,Y.M.NG,T.M.LEISSING, JRNL AUTH 3 A.H.EL-SAGHEER,E.SALAH,T.BROWN,W.S.AIK,M.A.MCDONOUGH, JRNL AUTH 4 C.J.SCHOFIELD JRNL TITL STRUCTURE-BASED DESIGN OF SELECTIVE FAT MASS AND OBESITY JRNL TITL 2 ASSOCIATED PROTEIN (FTO) INHIBITORS. JRNL REF J.MED.CHEM. V. 64 16609 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34762429 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01204 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 25134 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.450 REMARK 3 FREE R VALUE TEST SET COUNT : 1872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8200 - 5.5888 1.00 0 136 0.1536 0.1750 REMARK 3 2 2.4431 - 2.3787 1.00 0 141 0.2731 0.3259 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 28:91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.5107 -6.1798 -19.6657 REMARK 3 T TENSOR REMARK 3 T11: 0.7422 T22: 0.7763 REMARK 3 T33: 0.8512 T12: 0.0447 REMARK 3 T13: -0.0566 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 2.6054 L22: 3.0739 REMARK 3 L33: 2.8538 L12: 0.8857 REMARK 3 L13: 0.7923 L23: 0.9831 REMARK 3 S TENSOR REMARK 3 S11: 0.1773 S12: -0.1002 S13: 0.0560 REMARK 3 S21: 0.4565 S22: -0.1820 S23: -0.5657 REMARK 3 S31: 0.2055 S32: 0.2084 S33: -0.0391 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 92:162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2909 -13.8270 -17.0833 REMARK 3 T TENSOR REMARK 3 T11: 0.7555 T22: 0.7143 REMARK 3 T33: 0.6955 T12: -0.1165 REMARK 3 T13: -0.0433 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 3.6285 L22: 2.0718 REMARK 3 L33: 3.3125 L12: -0.0902 REMARK 3 L13: 0.9029 L23: 0.7435 REMARK 3 S TENSOR REMARK 3 S11: 0.4614 S12: -0.6475 S13: -0.4010 REMARK 3 S21: 0.3451 S22: -0.2611 S23: -0.2372 REMARK 3 S31: 0.5143 S32: -0.3540 S33: -0.0934 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 163:330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9021 -3.7104 -22.6770 REMARK 3 T TENSOR REMARK 3 T11: 0.5194 T22: 0.5853 REMARK 3 T33: 0.6022 T12: 0.0240 REMARK 3 T13: -0.0320 T23: -0.0869 REMARK 3 L TENSOR REMARK 3 L11: 3.6299 L22: 3.6797 REMARK 3 L33: 2.7671 L12: 1.2335 REMARK 3 L13: 1.1542 L23: -0.4417 REMARK 3 S TENSOR REMARK 3 S11: 0.3564 S12: 0.0186 S13: -0.0843 REMARK 3 S21: 0.0111 S22: -0.2454 S23: -0.1645 REMARK 3 S31: 0.2743 S32: 0.3210 S33: -0.0688 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 331:457 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3142 -19.5632 -40.4047 REMARK 3 T TENSOR REMARK 3 T11: 0.6548 T22: 0.6184 REMARK 3 T33: 0.6145 T12: -0.0383 REMARK 3 T13: 0.0246 T23: -0.1029 REMARK 3 L TENSOR REMARK 3 L11: 4.1952 L22: 2.7957 REMARK 3 L33: 3.7236 L12: 0.8582 REMARK 3 L13: 1.1877 L23: -0.0987 REMARK 3 S TENSOR REMARK 3 S11: 0.1722 S12: 0.3636 S13: -0.4827 REMARK 3 S21: -0.1086 S22: -0.0801 S23: -0.1442 REMARK 3 S31: 0.2591 S32: 0.0580 S33: -0.0913 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 458:504 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2613 -21.5367 -50.1674 REMARK 3 T TENSOR REMARK 3 T11: 1.0561 T22: 1.1679 REMARK 3 T33: 0.8485 T12: -0.0004 REMARK 3 T13: 0.0451 T23: -0.2786 REMARK 3 L TENSOR REMARK 3 L11: 3.4300 L22: 2.1815 REMARK 3 L33: 1.0661 L12: 0.8305 REMARK 3 L13: 0.5509 L23: -0.3936 REMARK 3 S TENSOR REMARK 3 S11: 0.2566 S12: 0.6909 S13: -0.5730 REMARK 3 S21: -0.6080 S22: 0.0015 S23: -0.3220 REMARK 3 S31: 0.3668 S32: 0.5269 S33: -0.2086 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QHO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000086067. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2716 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26707 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.20400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.95300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 12.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ID 4IE5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRISODIUM CITRATE, 8% PEG 3350, REMARK 280 4% TERT-BUTANOL, 8MG/ML PROTEIN, 1MM ZNSO4, 1MM INHIBITOR, PH REMARK 280 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 70.69200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.81405 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.98467 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 70.69200 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 40.81405 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.98467 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 70.69200 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 40.81405 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.98467 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 81.62809 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 55.96933 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 81.62809 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 55.96933 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 81.62809 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 55.96933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 SER A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 GLY A 23 REMARK 465 LEU A 24 REMARK 465 VAL A 25 REMARK 465 PRO A 26 REMARK 465 ARG A 27 REMARK 465 ASN A 164 REMARK 465 GLU A 165 REMARK 465 ASP A 166 REMARK 465 ALA A 167 REMARK 465 VAL A 168 REMARK 465 PRO A 169 REMARK 465 LEU A 170 REMARK 465 CYS A 171 REMARK 465 MET A 172 REMARK 465 SER A 173 REMARK 465 ALA A 174 REMARK 465 ASP A 175 REMARK 465 PHE A 176 REMARK 465 PRO A 177 REMARK 465 ARG A 178 REMARK 465 VAL A 179 REMARK 465 GLY A 180 REMARK 465 MET A 181 REMARK 465 GLY A 182 REMARK 465 SER A 183 REMARK 465 SER A 184 REMARK 465 TYR A 185 REMARK 465 ASN A 186 REMARK 465 GLY A 187 REMARK 465 GLN A 188 REMARK 465 GLY A 251 REMARK 465 PRO A 252 REMARK 465 GLU A 253 REMARK 465 GLU A 254 REMARK 465 GLU A 255 REMARK 465 SER A 256 REMARK 465 GLU A 257 REMARK 465 ASP A 258 REMARK 465 ASP A 259 REMARK 465 SER A 260 REMARK 465 HIS A 261 REMARK 465 PRO A 505 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 ASP A 36 CG OD1 OD2 REMARK 470 LYS A 45 NZ REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 VAL A 120 CG1 CG2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 SER A 123 OG REMARK 470 ASN A 124 CG OD1 ND2 REMARK 470 ILE A 125 CG1 CG2 CD1 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 HIS A 127 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 128 OG1 CG2 REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 GLN A 152 CD OE1 NE2 REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 GLN A 210 CG CD OE1 NE2 REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 LYS A 216 CE NZ REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 LEU A 262 CG CD1 CD2 REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 GLN A 336 OE1 NE2 REMARK 470 ASP A 353 CG OD1 OD2 REMARK 470 GLU A 360 CG CD OE1 OE2 REMARK 470 TYR A 389 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 390 CD NE CZ NH1 NH2 REMARK 470 LYS A 391 CE NZ REMARK 470 CYS A 392 SG REMARK 470 LYS A 408 CD CE NZ REMARK 470 GLU A 424 CG CD OE1 OE2 REMARK 470 LEU A 426 CD1 CD2 REMARK 470 ARG A 450 NE CZ NH1 NH2 REMARK 470 ARG A 459 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 462 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 467 CG OD1 OD2 REMARK 470 LYS A 469 CG CD CE NZ REMARK 470 LYS A 478 CG CD CE NZ REMARK 470 ASP A 479 CG OD1 OD2 REMARK 470 GLU A 495 CD OE1 OE2 REMARK 470 LYS A 504 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 46 42.04 -146.31 REMARK 500 LYS A 126 27.50 46.80 REMARK 500 THR A 128 174.13 172.93 REMARK 500 ALA A 130 -76.57 45.73 REMARK 500 TRP A 278 -4.25 66.19 REMARK 500 HIS A 290 -140.65 -104.27 REMARK 500 ASP A 299 -124.14 62.34 REMARK 500 TRP A 378 -73.07 -121.40 REMARK 500 TYR A 389 -11.77 93.62 REMARK 500 PRO A 470 105.98 -49.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 231 NE2 REMARK 620 2 ASP A 233 OD1 93.2 REMARK 620 3 HIS A 307 NE2 91.9 100.0 REMARK 620 4 NKG A 602 O3 105.1 156.5 94.1 REMARK 620 5 NKG A 602 N 92.6 89.5 169.2 75.3 REMARK 620 6 HOH A 723 O 178.4 85.5 87.5 76.4 88.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NKG A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LFM RELATED DB: PDB REMARK 900 RELATED ID: 4IDZ RELATED DB: PDB REMARK 900 RELATED ID: 4IE0 RELATED DB: PDB REMARK 900 RELATED ID: 4IE4 RELATED DB: PDB REMARK 900 RELATED ID: 4IE5 RELATED DB: PDB REMARK 900 RELATED ID: 4IE6 RELATED DB: PDB REMARK 900 RELATED ID: 4IE7 RELATED DB: PDB DBREF 4QHO A 32 505 UNP Q9C0B1 FTO_HUMAN 32 505 SEQADV 4QHO MET A 11 UNP Q9C0B1 EXPRESSION TAG SEQADV 4QHO GLY A 12 UNP Q9C0B1 EXPRESSION TAG SEQADV 4QHO SER A 13 UNP Q9C0B1 EXPRESSION TAG SEQADV 4QHO SER A 14 UNP Q9C0B1 EXPRESSION TAG SEQADV 4QHO HIS A 15 UNP Q9C0B1 EXPRESSION TAG SEQADV 4QHO HIS A 16 UNP Q9C0B1 EXPRESSION TAG SEQADV 4QHO HIS A 17 UNP Q9C0B1 EXPRESSION TAG SEQADV 4QHO HIS A 18 UNP Q9C0B1 EXPRESSION TAG SEQADV 4QHO HIS A 19 UNP Q9C0B1 EXPRESSION TAG SEQADV 4QHO HIS A 20 UNP Q9C0B1 EXPRESSION TAG SEQADV 4QHO SER A 21 UNP Q9C0B1 EXPRESSION TAG SEQADV 4QHO SER A 22 UNP Q9C0B1 EXPRESSION TAG SEQADV 4QHO GLY A 23 UNP Q9C0B1 EXPRESSION TAG SEQADV 4QHO LEU A 24 UNP Q9C0B1 EXPRESSION TAG SEQADV 4QHO VAL A 25 UNP Q9C0B1 EXPRESSION TAG SEQADV 4QHO PRO A 26 UNP Q9C0B1 EXPRESSION TAG SEQADV 4QHO ARG A 27 UNP Q9C0B1 EXPRESSION TAG SEQADV 4QHO GLY A 28 UNP Q9C0B1 EXPRESSION TAG SEQADV 4QHO SER A 29 UNP Q9C0B1 EXPRESSION TAG SEQADV 4QHO HIS A 30 UNP Q9C0B1 EXPRESSION TAG SEQADV 4QHO MET A 31 UNP Q9C0B1 EXPRESSION TAG SEQRES 1 A 495 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 495 LEU VAL PRO ARG GLY SER HIS MET THR PRO LYS ASP ASP SEQRES 3 A 495 GLU PHE TYR GLN GLN TRP GLN LEU LYS TYR PRO LYS LEU SEQRES 4 A 495 ILE LEU ARG GLU ALA SER SER VAL SER GLU GLU LEU HIS SEQRES 5 A 495 LYS GLU VAL GLN GLU ALA PHE LEU THR LEU HIS LYS HIS SEQRES 6 A 495 GLY CYS LEU PHE ARG ASP LEU VAL ARG ILE GLN GLY LYS SEQRES 7 A 495 ASP LEU LEU THR PRO VAL SER ARG ILE LEU ILE GLY ASN SEQRES 8 A 495 PRO GLY CYS THR TYR LYS TYR LEU ASN THR ARG LEU PHE SEQRES 9 A 495 THR VAL PRO TRP PRO VAL LYS GLY SER ASN ILE LYS HIS SEQRES 10 A 495 THR GLU ALA GLU ILE ALA ALA ALA CYS GLU THR PHE LEU SEQRES 11 A 495 LYS LEU ASN ASP TYR LEU GLN ILE GLU THR ILE GLN ALA SEQRES 12 A 495 LEU GLU GLU LEU ALA ALA LYS GLU LYS ALA ASN GLU ASP SEQRES 13 A 495 ALA VAL PRO LEU CYS MET SER ALA ASP PHE PRO ARG VAL SEQRES 14 A 495 GLY MET GLY SER SER TYR ASN GLY GLN ASP GLU VAL ASP SEQRES 15 A 495 ILE LYS SER ARG ALA ALA TYR ASN VAL THR LEU LEU ASN SEQRES 16 A 495 PHE MET ASP PRO GLN LYS MET PRO TYR LEU LYS GLU GLU SEQRES 17 A 495 PRO TYR PHE GLY MET GLY LYS MET ALA VAL SER TRP HIS SEQRES 18 A 495 HIS ASP GLU ASN LEU VAL ASP ARG SER ALA VAL ALA VAL SEQRES 19 A 495 TYR SER TYR SER CYS GLU GLY PRO GLU GLU GLU SER GLU SEQRES 20 A 495 ASP ASP SER HIS LEU GLU GLY ARG ASP PRO ASP ILE TRP SEQRES 21 A 495 HIS VAL GLY PHE LYS ILE SER TRP ASP ILE GLU THR PRO SEQRES 22 A 495 GLY LEU ALA ILE PRO LEU HIS GLN GLY ASP CYS TYR PHE SEQRES 23 A 495 MET LEU ASP ASP LEU ASN ALA THR HIS GLN HIS CYS VAL SEQRES 24 A 495 LEU ALA GLY SER GLN PRO ARG PHE SER SER THR HIS ARG SEQRES 25 A 495 VAL ALA GLU CYS SER THR GLY THR LEU ASP TYR ILE LEU SEQRES 26 A 495 GLN ARG CYS GLN LEU ALA LEU GLN ASN VAL CYS ASP ASP SEQRES 27 A 495 VAL ASP ASN ASP ASP VAL SER LEU LYS SER PHE GLU PRO SEQRES 28 A 495 ALA VAL LEU LYS GLN GLY GLU GLU ILE HIS ASN GLU VAL SEQRES 29 A 495 GLU PHE GLU TRP LEU ARG GLN PHE TRP PHE GLN GLY ASN SEQRES 30 A 495 ARG TYR ARG LYS CYS THR ASP TRP TRP CYS GLN PRO MET SEQRES 31 A 495 ALA GLN LEU GLU ALA LEU TRP LYS LYS MET GLU GLY VAL SEQRES 32 A 495 THR ASN ALA VAL LEU HIS GLU VAL LYS ARG GLU GLY LEU SEQRES 33 A 495 PRO VAL GLU GLN ARG ASN GLU ILE LEU THR ALA ILE LEU SEQRES 34 A 495 ALA SER LEU THR ALA ARG GLN ASN LEU ARG ARG GLU TRP SEQRES 35 A 495 HIS ALA ARG CYS GLN SER ARG ILE ALA ARG THR LEU PRO SEQRES 36 A 495 ALA ASP GLN LYS PRO GLU CYS ARG PRO TYR TRP GLU LYS SEQRES 37 A 495 ASP ASP ALA SER MET PRO LEU PRO PHE ASP LEU THR ASP SEQRES 38 A 495 ILE VAL SER GLU LEU ARG GLY GLN LEU LEU GLU ALA LYS SEQRES 39 A 495 PRO HET ZN A 601 1 HET NKG A 602 24 HETNAM ZN ZINC ION HETNAM NKG N-{[3-HYDROXY-6-(NAPHTHALEN-1-YL)PYRIDIN-2- HETNAM 2 NKG YL]CARBONYL}GLYCINE FORMUL 2 ZN ZN 2+ FORMUL 3 NKG C18 H14 N2 O4 FORMUL 4 HOH *28(H2 O) HELIX 1 1 GLU A 37 TYR A 46 1 10 HELIX 2 2 GLU A 53 VAL A 57 5 5 HELIX 3 3 SER A 58 HIS A 75 1 18 HELIX 4 4 ALA A 130 ALA A 163 1 34 HELIX 5 5 GLU A 190 ALA A 197 1 8 HELIX 6 6 ASP A 300 THR A 304 1 5 HELIX 7 7 THR A 330 GLN A 343 1 14 HELIX 8 8 GLU A 360 TRP A 378 1 19 HELIX 9 9 TRP A 378 GLN A 385 1 8 HELIX 10 10 TRP A 396 LYS A 422 1 27 HELIX 11 11 PRO A 427 SER A 458 1 32 HELIX 12 12 SER A 458 THR A 463 1 6 HELIX 13 13 LEU A 489 LEU A 501 1 13 SHEET 1 A 6 HIS A 30 MET A 31 0 SHEET 2 A 6 GLY A 284 PRO A 288 1 O ALA A 286 N MET A 31 SHEET 3 A 6 HIS A 271 ILE A 276 -1 N VAL A 272 O ILE A 287 SHEET 4 A 6 HIS A 305 LEU A 310 -1 O LEU A 310 N HIS A 271 SHEET 5 A 6 LYS A 225 HIS A 231 -1 N HIS A 231 O HIS A 307 SHEET 6 A 6 LYS A 216 GLU A 217 -1 N LYS A 216 O MET A 226 SHEET 1 B 7 LEU A 49 ARG A 52 0 SHEET 2 B 7 GLN A 291 MET A 297 -1 O CYS A 294 N ARG A 52 SHEET 3 B 7 VAL A 242 SER A 248 -1 N VAL A 244 O TYR A 295 SHEET 4 B 7 ARG A 316 ARG A 322 -1 O HIS A 321 N ALA A 243 SHEET 5 B 7 VAL A 201 MET A 207 -1 N ASN A 205 O SER A 318 SHEET 6 B 7 SER A 95 GLY A 100 -1 N SER A 95 O PHE A 206 SHEET 7 B 7 VAL A 116 PRO A 117 1 O VAL A 116 N LEU A 98 SHEET 1 C 2 LEU A 82 ILE A 85 0 SHEET 2 C 2 LYS A 88 LEU A 91 -1 O LEU A 90 N VAL A 83 SHEET 1 D 2 THR A 105 TYR A 108 0 SHEET 2 D 2 THR A 111 PHE A 114 -1 O LEU A 113 N TYR A 106 LINK NE2 HIS A 231 ZN ZN A 601 1555 1555 2.01 LINK OD1 ASP A 233 ZN ZN A 601 1555 1555 2.15 LINK NE2 HIS A 307 ZN ZN A 601 1555 1555 2.09 LINK ZN ZN A 601 O3 NKG A 602 1555 1555 2.04 LINK ZN ZN A 601 N NKG A 602 1555 1555 2.32 LINK ZN ZN A 601 O HOH A 723 1555 1555 2.54 CISPEP 1 ARG A 473 PRO A 474 0 1.04 SITE 1 AC1 5 HIS A 231 ASP A 233 HIS A 307 NKG A 602 SITE 2 AC1 5 HOH A 723 SITE 1 AC2 20 ARG A 96 TYR A 106 TYR A 108 LEU A 109 SITE 2 AC2 20 LEU A 203 ASN A 205 VAL A 228 HIS A 231 SITE 3 AC2 20 ASP A 233 GLU A 234 VAL A 244 TYR A 295 SITE 4 AC2 20 HIS A 307 VAL A 309 ARG A 316 SER A 318 SITE 5 AC2 20 THR A 320 ARG A 322 ZN A 601 HOH A 723 CRYST1 141.384 141.384 83.954 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007073 0.004084 0.000000 0.00000 SCALE2 0.000000 0.008167 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011911 0.00000