HEADER RNA BINDING PROTEIN 30-MAY-14 4QI0 TITLE X-RAY STRUCTURE OF THE ROQ DOMAIN FROM MURINE ROQUIN-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROQUIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ROQ DOMAIN; COMPND 5 SYNONYM: ROQUIN, PROTEIN SANROQUE, RING FINGER AND C3H ZINC FINGER COMPND 6 PROTEIN 1, RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING COMPND 7 PROTEIN 1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: GM551, KIAA2025, RC3H1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PETTRX1A KEYWDS ROQ DOMAIN, WINGED-HELIX DOMAIN, RNA BINDING, TNF CDE RNA, RNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.JANOWSKI,A.SCHLUNDT,M.SATTLER,D.NIESSING REVDAT 3 28-FEB-24 4QI0 1 REMARK REVDAT 2 20-AUG-14 4QI0 1 JRNL REVDAT 1 16-JUL-14 4QI0 0 JRNL AUTH A.SCHLUNDT,G.A.HEINZ,R.JANOWSKI,A.GEERLOF,R.STEHLE, JRNL AUTH 2 V.HEISSMEYER,D.NIESSING,M.SATTLER JRNL TITL STRUCTURAL BASIS FOR RNA RECOGNITION IN ROQUIN-MEDIATED JRNL TITL 2 POST-TRANSCRIPTIONAL GENE REGULATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 671 2014 JRNL REFN ISSN 1545-9993 JRNL PMID 25026077 JRNL DOI 10.1038/NSMB.2855 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 92.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1251 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2123 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2515 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 323 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.092 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2714 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2689 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3694 ; 1.880 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6209 ; 0.944 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 362 ; 6.105 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;33.494 ;24.211 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 530 ;14.300 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;18.968 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 421 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3104 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 634 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1308 ; 1.633 ; 1.377 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1307 ; 1.633 ; 1.375 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1644 ; 2.520 ; 2.042 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1645 ; 2.519 ; 2.046 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1405 ; 2.080 ; 1.687 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1405 ; 2.080 ; 1.688 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2026 ; 3.389 ; 2.433 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3319 ; 6.957 ;12.342 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3178 ; 6.697 ;11.539 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 326 REMARK 3 ORIGIN FOR THE GROUP (A): -19.597 -14.517 5.586 REMARK 3 T TENSOR REMARK 3 T11: 0.0214 T22: 0.0392 REMARK 3 T33: 0.0406 T12: -0.0034 REMARK 3 T13: 0.0043 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.5379 L22: 0.6947 REMARK 3 L33: 1.4672 L12: 0.0452 REMARK 3 L13: 0.1162 L23: 0.2728 REMARK 3 S TENSOR REMARK 3 S11: 0.0377 S12: 0.0270 S13: -0.0509 REMARK 3 S21: 0.0402 S22: -0.0083 S23: 0.0044 REMARK 3 S31: 0.0146 S32: 0.0053 S33: -0.0294 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 165 B 326 REMARK 3 ORIGIN FOR THE GROUP (A): -13.309 6.516 37.470 REMARK 3 T TENSOR REMARK 3 T11: 0.1136 T22: 0.0727 REMARK 3 T33: 0.0239 T12: -0.0056 REMARK 3 T13: -0.0269 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.2831 L22: 1.9166 REMARK 3 L33: 1.3054 L12: 0.5365 REMARK 3 L13: 0.4365 L23: 1.3910 REMARK 3 S TENSOR REMARK 3 S11: -0.0282 S12: -0.0265 S13: 0.0369 REMARK 3 S21: -0.0029 S22: 0.0013 S23: 0.0981 REMARK 3 S31: -0.0510 S32: -0.0126 S33: 0.0269 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QI0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000086079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.90745 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30555 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.62100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTO-RICKSHAW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 300 MM NA TARTRATE, 100 MM BIS-TRIS REMARK 280 -PROPANE, 20% PEG3350, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.45500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.45500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.61000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.75500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.61000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.75500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.45500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.61000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.75500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 92.45500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.61000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.75500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 471 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 147 REMARK 465 GLU A 148 REMARK 465 GLU A 149 REMARK 465 GLY A 150 REMARK 465 ARG A 151 REMARK 465 ILE A 152 REMARK 465 ARG A 153 REMARK 465 ALA A 154 REMARK 465 MET A 155 REMARK 465 ARG A 156 REMARK 465 ALA A 157 REMARK 465 ALA A 158 REMARK 465 ARG A 159 REMARK 465 SER A 160 REMARK 465 LEU A 161 REMARK 465 GLY A 162 REMARK 465 GLU A 163 REMARK 465 ARG A 164 REMARK 465 THR A 165 REMARK 465 VAL A 166 REMARK 465 THR A 167 REMARK 465 GLU A 168 REMARK 465 LEU A 169 REMARK 465 ILE A 170 REMARK 465 LEU A 171 REMARK 465 GLN A 172 REMARK 465 HIS A 173 REMARK 465 GLU B 147 REMARK 465 GLU B 148 REMARK 465 GLU B 149 REMARK 465 GLY B 150 REMARK 465 ARG B 151 REMARK 465 ILE B 152 REMARK 465 ARG B 153 REMARK 465 ALA B 154 REMARK 465 MET B 155 REMARK 465 ARG B 156 REMARK 465 ALA B 157 REMARK 465 ALA B 158 REMARK 465 ARG B 159 REMARK 465 SER B 160 REMARK 465 LEU B 161 REMARK 465 GLY B 162 REMARK 465 GLU B 163 REMARK 465 ARG B 164 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 231 O HOH A 616 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 252 1.00 -67.33 REMARK 500 ASP A 261 -113.27 58.83 REMARK 500 ASP B 261 -126.95 48.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QI2 RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE ROQ DOMAIN FROM MURINE ROQUIN-1 IN COMPLEX REMARK 900 WITH A 23-MER TNF-CDE RNA DBREF 4QI0 A 147 326 UNP Q4VGL6 RC3H1_MOUSE 147 326 DBREF 4QI0 B 147 326 UNP Q4VGL6 RC3H1_MOUSE 147 326 SEQRES 1 A 180 GLU GLU GLU GLY ARG ILE ARG ALA MET ARG ALA ALA ARG SEQRES 2 A 180 SER LEU GLY GLU ARG THR VAL THR GLU LEU ILE LEU GLN SEQRES 3 A 180 HIS GLN ASN PRO GLN GLN LEU SER SER ASN LEU TRP ALA SEQRES 4 A 180 ALA VAL ARG ALA ARG GLY CYS GLN PHE LEU GLY PRO ALA SEQRES 5 A 180 MET GLN GLU GLU ALA LEU LYS LEU VAL LEU LEU ALA LEU SEQRES 6 A 180 GLU ASP GLY SER ALA LEU SER ARG LYS VAL LEU VAL LEU SEQRES 7 A 180 PHE VAL VAL GLN ARG LEU GLU PRO ARG PHE PRO GLN ALA SEQRES 8 A 180 SER LYS THR SER ILE GLY HIS VAL VAL GLN LEU LEU TYR SEQRES 9 A 180 ARG ALA SER CYS PHE LYS VAL THR LYS ARG ASP GLU ASP SEQRES 10 A 180 SER SER LEU MET GLN LEU LYS GLU GLU PHE ARG THR TYR SEQRES 11 A 180 GLU ALA LEU ARG ARG GLU HIS ASP SER GLN ILE VAL GLN SEQRES 12 A 180 ILE ALA MET GLU ALA GLY LEU ARG ILE ALA PRO ASP GLN SEQRES 13 A 180 TRP SER SER LEU LEU TYR GLY ASP GLN SER HIS LYS SER SEQRES 14 A 180 HIS MET GLN SER ILE ILE ASP LYS LEU GLN THR SEQRES 1 B 180 GLU GLU GLU GLY ARG ILE ARG ALA MET ARG ALA ALA ARG SEQRES 2 B 180 SER LEU GLY GLU ARG THR VAL THR GLU LEU ILE LEU GLN SEQRES 3 B 180 HIS GLN ASN PRO GLN GLN LEU SER SER ASN LEU TRP ALA SEQRES 4 B 180 ALA VAL ARG ALA ARG GLY CYS GLN PHE LEU GLY PRO ALA SEQRES 5 B 180 MET GLN GLU GLU ALA LEU LYS LEU VAL LEU LEU ALA LEU SEQRES 6 B 180 GLU ASP GLY SER ALA LEU SER ARG LYS VAL LEU VAL LEU SEQRES 7 B 180 PHE VAL VAL GLN ARG LEU GLU PRO ARG PHE PRO GLN ALA SEQRES 8 B 180 SER LYS THR SER ILE GLY HIS VAL VAL GLN LEU LEU TYR SEQRES 9 B 180 ARG ALA SER CYS PHE LYS VAL THR LYS ARG ASP GLU ASP SEQRES 10 B 180 SER SER LEU MET GLN LEU LYS GLU GLU PHE ARG THR TYR SEQRES 11 B 180 GLU ALA LEU ARG ARG GLU HIS ASP SER GLN ILE VAL GLN SEQRES 12 B 180 ILE ALA MET GLU ALA GLY LEU ARG ILE ALA PRO ASP GLN SEQRES 13 B 180 TRP SER SER LEU LEU TYR GLY ASP GLN SER HIS LYS SER SEQRES 14 B 180 HIS MET GLN SER ILE ILE ASP LYS LEU GLN THR HET EDO A 401 8 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *323(H2 O) HELIX 1 1 ASN A 175 ARG A 190 1 16 HELIX 2 2 GLY A 196 GLU A 212 1 17 HELIX 3 3 ARG A 219 GLU A 231 1 13 HELIX 4 4 SER A 238 ALA A 252 1 15 HELIX 5 5 GLU A 271 ARG A 274 5 4 HELIX 6 6 THR A 275 ALA A 294 1 20 HELIX 7 7 ALA A 299 GLY A 309 1 11 HELIX 8 8 HIS A 313 GLN A 325 1 13 HELIX 9 9 ASN B 175 ARG B 190 1 16 HELIX 10 10 GLY B 196 GLU B 212 1 17 HELIX 11 11 ARG B 219 GLU B 231 1 13 HELIX 12 12 SER B 238 ALA B 252 1 15 HELIX 13 13 GLU B 271 ARG B 274 5 4 HELIX 14 14 THR B 275 ALA B 294 1 20 HELIX 15 15 ALA B 299 GLY B 309 1 11 HELIX 16 16 HIS B 313 THR B 326 1 14 SHEET 1 A 3 LEU A 217 SER A 218 0 SHEET 2 A 3 ASP A 263 LEU A 269 -1 O MET A 267 N LEU A 217 SHEET 3 A 3 PHE A 255 ARG A 260 -1 N THR A 258 O LEU A 266 SHEET 1 B 3 LEU B 217 SER B 218 0 SHEET 2 B 3 LEU B 266 LEU B 269 -1 O MET B 267 N LEU B 217 SHEET 3 B 3 PHE B 255 THR B 258 -1 N THR B 258 O LEU B 266 SITE 1 AC1 6 ARG A 251 SER A 312 SER A 315 HOH A 597 SITE 2 AC1 6 HOH A 612 HOH A 666 CRYST1 55.220 79.510 184.910 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018109 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005408 0.00000