HEADER RNA BINDING PROTEIN/RNA 30-MAY-14 4QI2 TITLE X-RAY STRUCTURE OF THE ROQ DOMAIN FROM MURINE ROQUIN-1 IN COMPLEX WITH TITLE 2 A 23-MER TNF-CDE RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROQUIN-1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: ROQ DOMAIN; COMPND 5 SYNONYM: ROQUIN, PROTEIN SANROQUE, RING FINGER AND C3H ZINC FINGER COMPND 6 PROTEIN 1, RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING COMPND 7 PROTEIN 1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RNA (5'- COMPND 11 R(*AP*CP*AP*UP*GP*UP*UP*UP*UP*CP*UP*GP*UP*GP*AP*AP*AP*AP*CP*GP*GP*AP* COMPND 12 G)-3'); COMPND 13 CHAIN: E, F, G, H; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: 23-MER, TNF CDE RNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: GM551, KIAA2025, RC3H1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PETTRX1A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: RNA OLIGOMER WAS CHEMICALLY SYNTHESIZED KEYWDS ROQ DOMAIN, WINGED-HELIX DOMAIN, RNA BINDING, TNF CDE RNA, RNA KEYWDS 2 BINDING PROTEIN, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.JANOWSKI,A.SCHLUNDT,M.SATTLER,D.NIESSING REVDAT 3 20-SEP-23 4QI2 1 REMARK REVDAT 2 20-AUG-14 4QI2 1 JRNL REVDAT 1 16-JUL-14 4QI2 0 JRNL AUTH A.SCHLUNDT,G.A.HEINZ,R.JANOWSKI,A.GEERLOF,R.STEHLE, JRNL AUTH 2 V.HEISSMEYER,D.NIESSING,M.SATTLER JRNL TITL STRUCTURAL BASIS FOR RNA RECOGNITION IN ROQUIN-MEDIATED JRNL TITL 2 POST-TRANSCRIPTIONAL GENE REGULATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 671 2014 JRNL REFN ISSN 1545-9993 JRNL PMID 25026077 JRNL DOI 10.1038/NSMB.2855 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 18931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1020 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1390 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.3840 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.4290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4895 REMARK 3 NUCLEIC ACID ATOMS : 1576 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.29000 REMARK 3 B22 (A**2) : -5.25000 REMARK 3 B33 (A**2) : -1.69000 REMARK 3 B12 (A**2) : 6.88000 REMARK 3 B13 (A**2) : -1.27000 REMARK 3 B23 (A**2) : 0.73000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.449 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.399 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.868 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6784 ; 0.011 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 5631 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9510 ; 1.513 ; 1.763 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13035 ; 1.166 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 608 ; 5.589 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;31.798 ;23.875 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 941 ;18.243 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;13.619 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1052 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6489 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1543 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2444 ; 5.921 ; 7.648 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2443 ; 5.908 ; 7.648 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3048 ; 8.880 ;11.465 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3049 ; 8.879 ;11.466 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4340 ; 6.637 ; 8.175 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4339 ; 6.633 ; 8.174 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6463 ; 9.992 ;12.212 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8364 ;13.416 ;66.862 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8364 ;13.417 ;66.872 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 12 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 173 325 B 173 325 9652 0.06 0.05 REMARK 3 2 A 174 324 C 174 324 9467 0.06 0.05 REMARK 3 3 A 173 324 D 173 324 9525 0.06 0.05 REMARK 3 4 B 174 324 C 174 324 9460 0.07 0.05 REMARK 3 5 B 173 324 D 173 324 9483 0.08 0.05 REMARK 3 6 C 174 324 D 174 324 9313 0.06 0.05 REMARK 3 7 E 4 20 F 4 20 1373 0.10 0.05 REMARK 3 8 E 4 20 G 4 20 1342 0.09 0.05 REMARK 3 9 E 4 20 H 4 20 1344 0.09 0.05 REMARK 3 10 F 4 20 G 4 20 1375 0.08 0.05 REMARK 3 11 F 4 21 H 4 21 1420 0.11 0.05 REMARK 3 12 G 4 20 H 4 20 1394 0.03 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QI2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000086081. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03321 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19951 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4QI0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM NACL, 100 MM BIS-TRIS, 25% REMARK 280 PEG3350, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 147 REMARK 465 GLU A 148 REMARK 465 GLU A 149 REMARK 465 GLY A 150 REMARK 465 ARG A 151 REMARK 465 ILE A 152 REMARK 465 ARG A 153 REMARK 465 ALA A 154 REMARK 465 MET A 155 REMARK 465 ARG A 156 REMARK 465 ALA A 157 REMARK 465 ALA A 158 REMARK 465 ARG A 159 REMARK 465 SER A 160 REMARK 465 LEU A 161 REMARK 465 GLY A 162 REMARK 465 GLU A 163 REMARK 465 ARG A 164 REMARK 465 THR A 165 REMARK 465 VAL A 166 REMARK 465 THR A 167 REMARK 465 GLU A 168 REMARK 465 LEU A 169 REMARK 465 ILE A 170 REMARK 465 LEU A 171 REMARK 465 GLN A 172 REMARK 465 THR A 326 REMARK 465 GLU B 147 REMARK 465 GLU B 148 REMARK 465 GLU B 149 REMARK 465 GLY B 150 REMARK 465 ARG B 151 REMARK 465 ILE B 152 REMARK 465 ARG B 153 REMARK 465 ALA B 154 REMARK 465 MET B 155 REMARK 465 ARG B 156 REMARK 465 ALA B 157 REMARK 465 ALA B 158 REMARK 465 ARG B 159 REMARK 465 SER B 160 REMARK 465 LEU B 161 REMARK 465 GLY B 162 REMARK 465 GLU B 163 REMARK 465 ARG B 164 REMARK 465 THR B 165 REMARK 465 VAL B 166 REMARK 465 THR B 167 REMARK 465 GLU B 168 REMARK 465 LEU B 169 REMARK 465 ILE B 170 REMARK 465 LEU B 171 REMARK 465 GLN B 172 REMARK 465 THR B 326 REMARK 465 GLU C 147 REMARK 465 GLU C 148 REMARK 465 GLU C 149 REMARK 465 GLY C 150 REMARK 465 ARG C 151 REMARK 465 ILE C 152 REMARK 465 ARG C 153 REMARK 465 ALA C 154 REMARK 465 MET C 155 REMARK 465 ARG C 156 REMARK 465 ALA C 157 REMARK 465 ALA C 158 REMARK 465 ARG C 159 REMARK 465 SER C 160 REMARK 465 LEU C 161 REMARK 465 GLY C 162 REMARK 465 GLU C 163 REMARK 465 ARG C 164 REMARK 465 THR C 165 REMARK 465 VAL C 166 REMARK 465 THR C 167 REMARK 465 GLU C 168 REMARK 465 LEU C 169 REMARK 465 ILE C 170 REMARK 465 LEU C 171 REMARK 465 GLN C 172 REMARK 465 HIS C 173 REMARK 465 THR C 326 REMARK 465 GLU D 147 REMARK 465 GLU D 148 REMARK 465 GLU D 149 REMARK 465 GLY D 150 REMARK 465 ARG D 151 REMARK 465 ILE D 152 REMARK 465 ARG D 153 REMARK 465 ALA D 154 REMARK 465 MET D 155 REMARK 465 ARG D 156 REMARK 465 ALA D 157 REMARK 465 ALA D 158 REMARK 465 ARG D 159 REMARK 465 SER D 160 REMARK 465 LEU D 161 REMARK 465 GLY D 162 REMARK 465 GLU D 163 REMARK 465 ARG D 164 REMARK 465 THR D 165 REMARK 465 VAL D 166 REMARK 465 THR D 167 REMARK 465 GLU D 168 REMARK 465 LEU D 169 REMARK 465 ILE D 170 REMARK 465 LEU D 171 REMARK 465 THR D 326 REMARK 465 A E 1 REMARK 465 C E 2 REMARK 465 A E 22 REMARK 465 G E 23 REMARK 465 A F 1 REMARK 465 C F 2 REMARK 465 A F 3 REMARK 465 A F 22 REMARK 465 G F 23 REMARK 465 A G 1 REMARK 465 C G 2 REMARK 465 A G 3 REMARK 465 G G 23 REMARK 465 A H 1 REMARK 465 C H 2 REMARK 465 A H 3 REMARK 465 A H 22 REMARK 465 G H 23 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 176 -73.03 -38.76 REMARK 500 SER A 215 144.97 -39.30 REMARK 500 PRO B 176 -73.32 -38.18 REMARK 500 ASP B 213 0.33 -63.26 REMARK 500 SER B 215 145.83 -38.93 REMARK 500 PRO C 176 -72.57 -40.42 REMARK 500 ASP C 213 1.17 -64.61 REMARK 500 SER C 215 146.40 -38.77 REMARK 500 PRO D 176 -72.25 -40.21 REMARK 500 ASP D 213 1.64 -65.45 REMARK 500 SER D 215 145.05 -38.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QI0 RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE ROQ DOMAIN FROM MURINE ROQUIN-1 DBREF 4QI2 A 147 326 UNP Q4VGL6 RC3H1_MOUSE 147 326 DBREF 4QI2 B 147 326 UNP Q4VGL6 RC3H1_MOUSE 147 326 DBREF 4QI2 C 147 326 UNP Q4VGL6 RC3H1_MOUSE 147 326 DBREF 4QI2 D 147 326 UNP Q4VGL6 RC3H1_MOUSE 147 326 DBREF 4QI2 E 1 23 PDB 4QI2 4QI2 1 23 DBREF 4QI2 F 1 23 PDB 4QI2 4QI2 1 23 DBREF 4QI2 G 1 23 PDB 4QI2 4QI2 1 23 DBREF 4QI2 H 1 23 PDB 4QI2 4QI2 1 23 SEQRES 1 A 180 GLU GLU GLU GLY ARG ILE ARG ALA MET ARG ALA ALA ARG SEQRES 2 A 180 SER LEU GLY GLU ARG THR VAL THR GLU LEU ILE LEU GLN SEQRES 3 A 180 HIS GLN ASN PRO GLN GLN LEU SER SER ASN LEU TRP ALA SEQRES 4 A 180 ALA VAL ARG ALA ARG GLY CYS GLN PHE LEU GLY PRO ALA SEQRES 5 A 180 MET GLN GLU GLU ALA LEU LYS LEU VAL LEU LEU ALA LEU SEQRES 6 A 180 GLU ASP GLY SER ALA LEU SER ARG LYS VAL LEU VAL LEU SEQRES 7 A 180 PHE VAL VAL GLN ARG LEU GLU PRO ARG PHE PRO GLN ALA SEQRES 8 A 180 SER LYS THR SER ILE GLY HIS VAL VAL GLN LEU LEU TYR SEQRES 9 A 180 ARG ALA SER CYS PHE LYS VAL THR LYS ARG ASP GLU ASP SEQRES 10 A 180 SER SER LEU MET GLN LEU LYS GLU GLU PHE ARG THR TYR SEQRES 11 A 180 GLU ALA LEU ARG ARG GLU HIS ASP SER GLN ILE VAL GLN SEQRES 12 A 180 ILE ALA MET GLU ALA GLY LEU ARG ILE ALA PRO ASP GLN SEQRES 13 A 180 TRP SER SER LEU LEU TYR GLY ASP GLN SER HIS LYS SER SEQRES 14 A 180 HIS MET GLN SER ILE ILE ASP LYS LEU GLN THR SEQRES 1 B 180 GLU GLU GLU GLY ARG ILE ARG ALA MET ARG ALA ALA ARG SEQRES 2 B 180 SER LEU GLY GLU ARG THR VAL THR GLU LEU ILE LEU GLN SEQRES 3 B 180 HIS GLN ASN PRO GLN GLN LEU SER SER ASN LEU TRP ALA SEQRES 4 B 180 ALA VAL ARG ALA ARG GLY CYS GLN PHE LEU GLY PRO ALA SEQRES 5 B 180 MET GLN GLU GLU ALA LEU LYS LEU VAL LEU LEU ALA LEU SEQRES 6 B 180 GLU ASP GLY SER ALA LEU SER ARG LYS VAL LEU VAL LEU SEQRES 7 B 180 PHE VAL VAL GLN ARG LEU GLU PRO ARG PHE PRO GLN ALA SEQRES 8 B 180 SER LYS THR SER ILE GLY HIS VAL VAL GLN LEU LEU TYR SEQRES 9 B 180 ARG ALA SER CYS PHE LYS VAL THR LYS ARG ASP GLU ASP SEQRES 10 B 180 SER SER LEU MET GLN LEU LYS GLU GLU PHE ARG THR TYR SEQRES 11 B 180 GLU ALA LEU ARG ARG GLU HIS ASP SER GLN ILE VAL GLN SEQRES 12 B 180 ILE ALA MET GLU ALA GLY LEU ARG ILE ALA PRO ASP GLN SEQRES 13 B 180 TRP SER SER LEU LEU TYR GLY ASP GLN SER HIS LYS SER SEQRES 14 B 180 HIS MET GLN SER ILE ILE ASP LYS LEU GLN THR SEQRES 1 C 180 GLU GLU GLU GLY ARG ILE ARG ALA MET ARG ALA ALA ARG SEQRES 2 C 180 SER LEU GLY GLU ARG THR VAL THR GLU LEU ILE LEU GLN SEQRES 3 C 180 HIS GLN ASN PRO GLN GLN LEU SER SER ASN LEU TRP ALA SEQRES 4 C 180 ALA VAL ARG ALA ARG GLY CYS GLN PHE LEU GLY PRO ALA SEQRES 5 C 180 MET GLN GLU GLU ALA LEU LYS LEU VAL LEU LEU ALA LEU SEQRES 6 C 180 GLU ASP GLY SER ALA LEU SER ARG LYS VAL LEU VAL LEU SEQRES 7 C 180 PHE VAL VAL GLN ARG LEU GLU PRO ARG PHE PRO GLN ALA SEQRES 8 C 180 SER LYS THR SER ILE GLY HIS VAL VAL GLN LEU LEU TYR SEQRES 9 C 180 ARG ALA SER CYS PHE LYS VAL THR LYS ARG ASP GLU ASP SEQRES 10 C 180 SER SER LEU MET GLN LEU LYS GLU GLU PHE ARG THR TYR SEQRES 11 C 180 GLU ALA LEU ARG ARG GLU HIS ASP SER GLN ILE VAL GLN SEQRES 12 C 180 ILE ALA MET GLU ALA GLY LEU ARG ILE ALA PRO ASP GLN SEQRES 13 C 180 TRP SER SER LEU LEU TYR GLY ASP GLN SER HIS LYS SER SEQRES 14 C 180 HIS MET GLN SER ILE ILE ASP LYS LEU GLN THR SEQRES 1 D 180 GLU GLU GLU GLY ARG ILE ARG ALA MET ARG ALA ALA ARG SEQRES 2 D 180 SER LEU GLY GLU ARG THR VAL THR GLU LEU ILE LEU GLN SEQRES 3 D 180 HIS GLN ASN PRO GLN GLN LEU SER SER ASN LEU TRP ALA SEQRES 4 D 180 ALA VAL ARG ALA ARG GLY CYS GLN PHE LEU GLY PRO ALA SEQRES 5 D 180 MET GLN GLU GLU ALA LEU LYS LEU VAL LEU LEU ALA LEU SEQRES 6 D 180 GLU ASP GLY SER ALA LEU SER ARG LYS VAL LEU VAL LEU SEQRES 7 D 180 PHE VAL VAL GLN ARG LEU GLU PRO ARG PHE PRO GLN ALA SEQRES 8 D 180 SER LYS THR SER ILE GLY HIS VAL VAL GLN LEU LEU TYR SEQRES 9 D 180 ARG ALA SER CYS PHE LYS VAL THR LYS ARG ASP GLU ASP SEQRES 10 D 180 SER SER LEU MET GLN LEU LYS GLU GLU PHE ARG THR TYR SEQRES 11 D 180 GLU ALA LEU ARG ARG GLU HIS ASP SER GLN ILE VAL GLN SEQRES 12 D 180 ILE ALA MET GLU ALA GLY LEU ARG ILE ALA PRO ASP GLN SEQRES 13 D 180 TRP SER SER LEU LEU TYR GLY ASP GLN SER HIS LYS SER SEQRES 14 D 180 HIS MET GLN SER ILE ILE ASP LYS LEU GLN THR SEQRES 1 E 23 A C A U G U U U U C U G U SEQRES 2 E 23 G A A A A C G G A G SEQRES 1 F 23 A C A U G U U U U C U G U SEQRES 2 F 23 G A A A A C G G A G SEQRES 1 G 23 A C A U G U U U U C U G U SEQRES 2 G 23 G A A A A C G G A G SEQRES 1 H 23 A C A U G U U U U C U G U SEQRES 2 H 23 G A A A A C G G A G FORMUL 9 HOH *32(H2 O) HELIX 1 1 ASN A 175 ALA A 189 1 15 HELIX 2 2 GLY A 196 GLU A 212 1 17 HELIX 3 3 ARG A 219 GLU A 231 1 13 HELIX 4 4 SER A 238 ALA A 252 1 15 HELIX 5 5 GLU A 271 ARG A 274 5 4 HELIX 6 6 THR A 275 ALA A 294 1 20 HELIX 7 7 ALA A 299 GLY A 309 1 11 HELIX 8 8 HIS A 313 GLN A 325 1 13 HELIX 9 9 ASN B 175 ALA B 189 1 15 HELIX 10 10 GLY B 196 GLU B 212 1 17 HELIX 11 11 SER B 218 GLU B 231 1 14 HELIX 12 12 SER B 238 ALA B 252 1 15 HELIX 13 13 GLU B 271 ARG B 274 5 4 HELIX 14 14 THR B 275 ALA B 294 1 20 HELIX 15 15 ALA B 299 GLY B 309 1 11 HELIX 16 16 HIS B 313 GLN B 325 1 13 HELIX 17 17 ASN C 175 ALA C 189 1 15 HELIX 18 18 GLY C 196 GLU C 212 1 17 HELIX 19 19 ARG C 219 GLU C 231 1 13 HELIX 20 20 SER C 238 ALA C 252 1 15 HELIX 21 21 GLU C 271 ARG C 274 5 4 HELIX 22 22 THR C 275 ALA C 294 1 20 HELIX 23 23 ALA C 299 GLY C 309 1 11 HELIX 24 24 HIS C 313 GLN C 325 1 13 HELIX 25 25 ASN D 175 ALA D 189 1 15 HELIX 26 26 GLY D 196 GLU D 212 1 17 HELIX 27 27 ARG D 219 GLU D 231 1 13 HELIX 28 28 SER D 238 ALA D 252 1 15 HELIX 29 29 GLU D 271 ARG D 274 5 4 HELIX 30 30 THR D 275 ALA D 294 1 20 HELIX 31 31 ALA D 299 GLY D 309 1 11 HELIX 32 32 HIS D 313 GLN D 325 1 13 SHEET 1 A 3 LEU A 217 SER A 218 0 SHEET 2 A 3 ASP A 263 LEU A 269 -1 O MET A 267 N LEU A 217 SHEET 3 A 3 PHE A 255 ARG A 260 -1 N THR A 258 O LEU A 266 SHEET 1 B 2 PHE B 255 ARG B 260 0 SHEET 2 B 2 ASP B 263 LEU B 269 -1 O LEU B 266 N THR B 258 SHEET 1 C 3 LEU C 217 SER C 218 0 SHEET 2 C 3 ASP C 263 LEU C 269 -1 O MET C 267 N LEU C 217 SHEET 3 C 3 PHE C 255 ARG C 260 -1 N THR C 258 O LEU C 266 SHEET 1 D 3 LEU D 217 SER D 218 0 SHEET 2 D 3 ASP D 263 LEU D 269 -1 O MET D 267 N LEU D 217 SHEET 3 D 3 PHE D 255 ARG D 260 -1 N THR D 258 O LEU D 266 CRYST1 56.560 60.410 84.370 105.68 101.36 95.72 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017680 0.001772 0.004272 0.00000 SCALE2 0.000000 0.016636 0.005176 0.00000 SCALE3 0.000000 0.000000 0.012661 0.00000