HEADER TRANSCRIPTION 03-JUN-14 4QJF TITLE X-RAY CRYSTAL STRUCTURE OF THERMOCUCCUS KODAKARENSIS RNA POLYMERASE TITLE 2 RPP4/RPO7 (RPOF/RPOE) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-DIRECTED RNA POLYMERASE, SUBUNIT E'; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA-DIRECTED RNA POLYMERASE, SUBUNIT F; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 STRAIN: ATCC BAA-918 / JCM 12380 / KOD1; SOURCE 5 GENE: RPO7, TK1699; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 10 ORGANISM_TAXID: 69014; SOURCE 11 STRAIN: ATCC BAA-918 / JCM 12380 / KOD1; SOURCE 12 GENE: RPO4, TK0901; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.S.MURAKAMI REVDAT 2 28-FEB-24 4QJF 1 SEQADV REVDAT 1 15-OCT-14 4QJF 0 JRNL AUTH K.S.MURAKAMI JRNL TITL CRYSTAL STRUCTURE OF EURYARCHAEAL RNA POLYMERASE AND INSIGHT JRNL TITL 2 INTO THE EVOLUTION OF RNA POLYMERASE II STRUCTURE JRNL REF NAT.COMMUN. 2014 JRNL REFN ESSN 2041-1723 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1626) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.6 REMARK 3 NUMBER OF REFLECTIONS : 12575 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.7958 - 3.9489 0.99 2833 145 0.1526 0.1886 REMARK 3 2 3.9489 - 3.1361 0.90 1655 91 0.2100 0.3045 REMARK 3 3 3.1361 - 2.7402 1.00 2858 169 0.2123 0.3048 REMARK 3 4 2.7402 - 2.4899 0.99 2837 133 0.2204 0.2909 REMARK 3 5 2.4899 - 2.3115 0.84 2391 135 0.2485 0.3443 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2573 REMARK 3 ANGLE : 1.212 3462 REMARK 3 CHIRALITY : 0.044 376 REMARK 3 PLANARITY : 0.006 449 REMARK 3 DIHEDRAL : 17.264 1019 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9209 7.2343 -42.8383 REMARK 3 T TENSOR REMARK 3 T11: 0.1573 T22: 0.1195 REMARK 3 T33: 0.0843 T12: 0.0139 REMARK 3 T13: -0.0058 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.4785 L22: 0.1363 REMARK 3 L33: 1.1019 L12: -0.0474 REMARK 3 L13: -0.4933 L23: 0.5205 REMARK 3 S TENSOR REMARK 3 S11: 0.0420 S12: 0.0754 S13: -0.0168 REMARK 3 S21: -0.0752 S22: -0.0000 S23: -0.0533 REMARK 3 S31: -0.3278 S32: -0.1676 S33: 0.0175 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1436 -1.6345 -9.7129 REMARK 3 T TENSOR REMARK 3 T11: 0.1913 T22: 0.2339 REMARK 3 T33: 0.1843 T12: 0.0055 REMARK 3 T13: -0.0260 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: -0.0154 L22: 0.1088 REMARK 3 L33: 0.2102 L12: -0.0389 REMARK 3 L13: 0.3416 L23: -0.2222 REMARK 3 S TENSOR REMARK 3 S11: 0.0598 S12: -0.1146 S13: -0.0952 REMARK 3 S21: 0.0294 S22: -0.1031 S23: 0.0320 REMARK 3 S31: 0.1891 S32: 0.0963 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2427 5.4715 -24.8502 REMARK 3 T TENSOR REMARK 3 T11: 0.1462 T22: 0.2297 REMARK 3 T33: 0.2037 T12: 0.0001 REMARK 3 T13: 0.0020 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 0.0312 L22: 0.1301 REMARK 3 L33: 0.2233 L12: -0.1757 REMARK 3 L13: 0.0317 L23: -0.0847 REMARK 3 S TENSOR REMARK 3 S11: 0.0800 S12: 0.0840 S13: 0.0106 REMARK 3 S21: -0.0672 S22: -0.1002 S23: -0.0599 REMARK 3 S31: 0.0926 S32: 0.1163 S33: -0.0020 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5649 10.0426 -2.7188 REMARK 3 T TENSOR REMARK 3 T11: 0.2093 T22: 0.3609 REMARK 3 T33: 0.2097 T12: -0.1029 REMARK 3 T13: 0.0125 T23: -0.0522 REMARK 3 L TENSOR REMARK 3 L11: 0.0131 L22: 0.1479 REMARK 3 L33: 0.0375 L12: -0.0196 REMARK 3 L13: -0.0490 L23: -0.1057 REMARK 3 S TENSOR REMARK 3 S11: 0.0387 S12: -0.3661 S13: 0.1999 REMARK 3 S21: 0.2061 S22: -0.0546 S23: 0.0948 REMARK 3 S31: -0.2577 S32: -0.0463 S33: 0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7792 10.8168 -35.1162 REMARK 3 T TENSOR REMARK 3 T11: 0.2776 T22: 0.1576 REMARK 3 T33: 0.1692 T12: -0.0503 REMARK 3 T13: -0.0594 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.1817 L22: 0.7237 REMARK 3 L33: 0.7341 L12: -0.4325 REMARK 3 L13: 0.0317 L23: 0.4196 REMARK 3 S TENSOR REMARK 3 S11: -0.0689 S12: 0.0331 S13: 0.0826 REMARK 3 S21: -0.7709 S22: -0.1570 S23: 0.7448 REMARK 3 S31: -0.2941 S32: -0.1132 S33: -0.0397 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8396 -5.1268 -42.1997 REMARK 3 T TENSOR REMARK 3 T11: 0.4162 T22: 0.0781 REMARK 3 T33: 0.3092 T12: -0.0038 REMARK 3 T13: -0.1676 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.3789 L22: 0.3346 REMARK 3 L33: 0.6225 L12: 0.2351 REMARK 3 L13: 0.3319 L23: 0.0365 REMARK 3 S TENSOR REMARK 3 S11: 0.2499 S12: 0.4104 S13: -0.1393 REMARK 3 S21: -0.7790 S22: -0.1163 S23: 0.1763 REMARK 3 S31: 0.2803 S32: 0.5234 S33: -0.0397 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5790 17.0277 -17.8647 REMARK 3 T TENSOR REMARK 3 T11: 0.1409 T22: 0.1090 REMARK 3 T33: 0.1761 T12: 0.0220 REMARK 3 T13: -0.0016 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: -0.1423 L22: 1.2240 REMARK 3 L33: 0.2804 L12: -0.4097 REMARK 3 L13: -0.1402 L23: -0.5606 REMARK 3 S TENSOR REMARK 3 S11: -0.1140 S12: 0.0511 S13: 0.0277 REMARK 3 S21: 0.1118 S22: 0.1520 S23: 0.1478 REMARK 3 S31: -0.0806 S32: -0.0780 S33: 0.0054 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 117 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8917 11.8984 -12.4735 REMARK 3 T TENSOR REMARK 3 T11: 0.2463 T22: 0.4076 REMARK 3 T33: 0.4631 T12: 0.0006 REMARK 3 T13: 0.0216 T23: 0.1400 REMARK 3 L TENSOR REMARK 3 L11: 0.0509 L22: 0.0208 REMARK 3 L33: 0.5745 L12: 0.0106 REMARK 3 L13: -0.1088 L23: 0.0363 REMARK 3 S TENSOR REMARK 3 S11: 0.3278 S12: -0.1145 S13: -0.2601 REMARK 3 S21: -0.3929 S22: 0.3674 S23: 0.3304 REMARK 3 S31: -0.4404 S32: 0.3666 S33: 0.0043 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QJF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000086130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9714 REMARK 200 MONOCHROMATOR : NA REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12575 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NAACETATE AND 30 % GLYCEROL, PH REMARK 280 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.23250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.70650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.47100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.70650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.23250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.47100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 187 REMARK 465 LYS A 188 REMARK 465 GLY A 189 REMARK 465 GLU A 190 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 183 O HOH A 257 1.92 REMARK 500 OE1 GLU A 174 O HOH A 223 2.10 REMARK 500 N LEU B 54 O HOH B 261 2.15 REMARK 500 OE2 GLU A 88 O HOH A 217 2.15 REMARK 500 NH1 ARG B 23 O HOH B 241 2.16 REMARK 500 OE2 GLU A 158 O HOH A 246 2.16 REMARK 500 O HOH B 242 O HOH B 266 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 210 O HOH B 240 3544 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 133 33.88 -77.63 REMARK 500 LYS A 152 -86.24 -93.94 REMARK 500 ARG A 166 46.84 -84.63 REMARK 500 LYS A 180 -146.75 -73.17 REMARK 500 LYS A 181 11.11 -64.30 REMARK 500 GLU A 185 74.75 -68.68 REMARK 500 LEU B 29 57.94 25.92 REMARK 500 GLU B 31 -91.11 60.13 REMARK 500 GLU B 34 -62.05 57.72 REMARK 500 GLU B 35 73.55 68.18 REMARK 500 GLU B 117 -169.09 -75.61 REMARK 500 TYR B 118 -34.80 58.67 REMARK 500 LEU B 121 -20.58 65.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QIW RELATED DB: PDB DBREF 4QJF A 1 190 UNP Q5JIY4 Q5JIY4_THEKO 1 190 DBREF 4QJF B 1 114 UNP Q5JI52 Q5JI52_THEKO 1 114 SEQADV 4QJF ILE B 115 UNP Q5JI52 EXPRESSION TAG SEQADV 4QJF ASP B 116 UNP Q5JI52 EXPRESSION TAG SEQADV 4QJF GLU B 117 UNP Q5JI52 EXPRESSION TAG SEQADV 4QJF TYR B 118 UNP Q5JI52 EXPRESSION TAG SEQADV 4QJF ARG B 119 UNP Q5JI52 EXPRESSION TAG SEQADV 4QJF PRO B 120 UNP Q5JI52 EXPRESSION TAG SEQADV 4QJF LEU B 121 UNP Q5JI52 EXPRESSION TAG SEQADV 4QJF GLU B 122 UNP Q5JI52 EXPRESSION TAG SEQRES 1 A 190 MET TYR LYS LEU LEU LYS VAL LYS ASP VAL VAL ARG ILE SEQRES 2 A 190 PRO PRO ARG MET PHE THR MET ASP PRO LYS GLU ALA ALA SEQRES 3 A 190 LYS ILE VAL LEU ARG GLU THR TYR GLU GLY ILE TYR ASP SEQRES 4 A 190 ARG ASP GLU GLY VAL VAL LEU ALA ILE LEU ASP VAL GLU SEQRES 5 A 190 GLU ILE SER GLU GLY VAL ILE VAL PRO GLY ASP GLY ALA SEQRES 6 A 190 THR TYR HIS GLU ALA ILE PHE ASN VAL LEU VAL TRP GLU SEQRES 7 A 190 PRO ARG ASN GLN GLU VAL VAL GLU GLY GLU VAL VAL GLU SEQRES 8 A 190 MET MET PRO TYR GLY ALA PHE ILE ARG ILE GLY PRO MET SEQRES 9 A 190 ASP GLY LEU VAL HIS ILE SER GLN LEU MET ASP ASP TYR SEQRES 10 A 190 VAL VAL PHE ASP GLU LYS ASN ARG GLN PHE ILE GLY LYS SEQRES 11 A 190 GLU THR ASN ARG VAL LEU LYS LEU GLY ASP TYR VAL ARG SEQRES 12 A 190 ALA ARG ILE ILE GLY VAL SER VAL LYS SER ARG VAL ILE SEQRES 13 A 190 ARG GLU ASN LYS ILE ASN MET THR MET ARG GLN PRO GLY SEQRES 14 A 190 LEU GLY LYS PHE GLU TRP ILE GLU LYS GLU LYS LYS LYS SEQRES 15 A 190 ALA LYS GLU GLU SER LYS GLY GLU SEQRES 1 B 122 MET ILE GLY ARG LYS LYS LEU GLU GLU HIS TYR ILE THR SEQRES 2 B 122 ILE ALA GLU ALA LYS GLU LEU LEU GLU ARG ARG HIS ALA SEQRES 3 B 122 GLU GLY LEU ALA GLU ASN PRO GLU GLU PRO MET PHE TYR SEQRES 4 B 122 GLU ALA ARG VAL SER LEU GLU HIS ALA GLU ARG PHE ALA SEQRES 5 B 122 LYS LEU LYS PRO GLU GLN ALA ARG GLU LEU LYS GLU LYS SEQRES 6 B 122 LEU MET GLY LEU PHE ASP TRP ILE ASN GLU ARG ILE ALA SEQRES 7 B 122 ALA LYS LEU VAL ASP ILE LEU PRO GLU ASP TYR LEU ASP SEQRES 8 B 122 ILE ARG VAL ILE PHE ALA LYS GLU GLU TYR MET PRO THR SEQRES 9 B 122 PRO GLU GLU ALA GLU GLU ILE ILE LYS VAL ILE ASP GLU SEQRES 10 B 122 TYR ARG PRO LEU GLU FORMUL 3 HOH *137(H2 O) HELIX 1 1 PRO A 14 PHE A 18 5 5 HELIX 2 2 ASP A 21 GLU A 35 1 15 HELIX 3 3 SER A 111 LEU A 113 5 3 HELIX 4 4 VAL A 155 ASN A 159 5 5 HELIX 5 5 PHE A 173 LYS A 180 1 8 HELIX 6 6 THR B 13 GLU B 27 1 15 HELIX 7 7 PHE B 38 ALA B 52 1 15 HELIX 8 8 LYS B 55 GLY B 68 1 14 HELIX 9 9 ASN B 74 LEU B 85 1 12 HELIX 10 10 ASP B 88 ALA B 97 1 10 HELIX 11 11 THR B 104 GLU B 117 1 14 SHEET 1 A 5 TYR A 38 ASP A 39 0 SHEET 2 A 5 GLY A 43 ILE A 54 -1 O GLY A 43 N ASP A 39 SHEET 3 A 5 THR A 66 TRP A 77 -1 O ASN A 73 N LEU A 49 SHEET 4 A 5 TYR A 2 ILE A 13 -1 N ASP A 9 O ALA A 70 SHEET 5 A 5 LYS B 5 ILE B 12 -1 O GLU B 8 N LYS A 6 SHEET 1 B 7 GLY A 171 LYS A 172 0 SHEET 2 B 7 TYR A 141 SER A 150 -1 N ARG A 143 O GLY A 171 SHEET 3 B 7 LYS A 160 THR A 164 -1 O ASN A 162 N ILE A 147 SHEET 4 B 7 ASP A 105 HIS A 109 1 N LEU A 107 O MET A 163 SHEET 5 B 7 GLY A 96 ARG A 100 -1 N ILE A 99 O GLY A 106 SHEET 6 B 7 VAL A 84 MET A 93 -1 N GLU A 88 O ARG A 100 SHEET 7 B 7 TYR A 141 SER A 150 -1 O ALA A 144 N VAL A 85 SHEET 1 C 3 VAL A 118 ASP A 121 0 SHEET 2 C 3 GLN A 126 GLY A 129 -1 O GLN A 126 N ASP A 121 SHEET 3 C 3 VAL A 135 LYS A 137 -1 O LEU A 136 N PHE A 127 CISPEP 1 ILE A 101 GLY A 102 0 12.49 CISPEP 2 GLY B 28 LEU B 29 0 -13.53 CRYST1 42.465 80.942 97.413 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023549 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012355 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010266 0.00000