data_4QKA # _entry.id 4QKA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4QKA pdb_00004qka 10.2210/pdb4qka/pdb NDB NA3047 ? ? RCSB RCSB086161 ? ? WWPDB D_1000086161 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-08-06 2 'Structure model' 1 1 2014-08-27 3 'Structure model' 1 2 2014-09-10 4 'Structure model' 1 3 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' entity 6 4 'Structure model' pdbx_entity_nonpoly 7 4 'Structure model' pdbx_struct_conn_angle 8 4 'Structure model' struct_conn 9 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_entity.pdbx_description' 5 4 'Structure model' '_pdbx_entity_nonpoly.name' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.value' 17 4 'Structure model' '_struct_conn.pdbx_dist_value' 18 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4QKA _pdbx_database_status.recvd_initial_deposition_date 2014-06-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4QK9 . unspecified PDB 4QK8 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gao, A.' 1 'Serganov, A.' 2 # _citation.id primary _citation.title 'Structural insights into recognition of c-di-AMP by the ydaO riboswitch.' _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_volume 10 _citation.page_first 787 _citation.page_last 792 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1552-4450 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25086507 _citation.pdbx_database_id_DOI 10.1038/nchembio.1607 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gao, A.' 1 ? primary 'Serganov, A.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'C-di-AMP riboswitch' 39722.457 1 ? ? ? ? 2 non-polymer syn ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; 658.412 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 6 non-polymer syn 'IRIDIUM HEXAMMINE ION' 294.400 5 ? ? ? ? 7 water nat water 18.015 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GTP)GUUGCCGAAUCCGAAAGGUACGGAGGAACCGCUUUUUGGGGUUAAUCUGCAGUGAAGCUGCAGUAGGGAUACCUU CUGUCCCGCACCCGACAGCUAACUCCGGAGGCAAUAAAGGAAGGA(23G) ; _entity_poly.pdbx_seq_one_letter_code_can ;GGUUGCCGAAUCCGAAAGGUACGGAGGAACCGCUUUUUGGGGUUAAUCUGCAGUGAAGCUGCAGUAGGGAUACCUUCUGU CCCGCACCCGACAGCUAACUCCGGAGGCAAUAAAGGAAGGAX ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; 2BA 3 'MAGNESIUM ION' MG 4 'POTASSIUM ION' K 5 'SULFATE ION' SO4 6 'IRIDIUM HEXAMMINE ION' IRI 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 U n 1 4 U n 1 5 G n 1 6 C n 1 7 C n 1 8 G n 1 9 A n 1 10 A n 1 11 U n 1 12 C n 1 13 C n 1 14 G n 1 15 A n 1 16 A n 1 17 A n 1 18 G n 1 19 G n 1 20 U n 1 21 A n 1 22 C n 1 23 G n 1 24 G n 1 25 A n 1 26 G n 1 27 G n 1 28 A n 1 29 A n 1 30 C n 1 31 C n 1 32 G n 1 33 C n 1 34 U n 1 35 U n 1 36 U n 1 37 U n 1 38 U n 1 39 G n 1 40 G n 1 41 G n 1 42 G n 1 43 U n 1 44 U n 1 45 A n 1 46 A n 1 47 U n 1 48 C n 1 49 U n 1 50 G n 1 51 C n 1 52 A n 1 53 G n 1 54 U n 1 55 G n 1 56 A n 1 57 A n 1 58 G n 1 59 C n 1 60 U n 1 61 G n 1 62 C n 1 63 A n 1 64 G n 1 65 U n 1 66 A n 1 67 G n 1 68 G n 1 69 G n 1 70 A n 1 71 U n 1 72 A n 1 73 C n 1 74 C n 1 75 U n 1 76 U n 1 77 C n 1 78 U n 1 79 G n 1 80 U n 1 81 C n 1 82 C n 1 83 C n 1 84 G n 1 85 C n 1 86 A n 1 87 C n 1 88 C n 1 89 C n 1 90 G n 1 91 A n 1 92 C n 1 93 A n 1 94 G n 1 95 C n 1 96 U n 1 97 A n 1 98 A n 1 99 C n 1 100 U n 1 101 C n 1 102 C n 1 103 G n 1 104 G n 1 105 A n 1 106 G n 1 107 G n 1 108 C n 1 109 A n 1 110 A n 1 111 U n 1 112 A n 1 113 A n 1 114 A n 1 115 G n 1 116 G n 1 117 A n 1 118 A n 1 119 G n 1 120 G n 1 121 A n 1 122 23G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'In vitro transcription' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 23G 'RNA OH 3 prime terminus' n ;GUANOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C10 H13 N5 O10 P2' 425.185 2BA non-polymer . ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; "bis-(3',5')-cyclic-dimeric-Adenosine-monophosphate" 'C20 H24 N10 O12 P2' 658.412 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 IRI non-polymer . 'IRIDIUM HEXAMMINE ION' ? 'H18 Ir N6 3' 294.400 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 U 4 4 4 U U A . n A 1 5 G 5 5 5 G G A . n A 1 6 C 6 6 6 C C A . n A 1 7 C 7 7 7 C C A . n A 1 8 G 8 8 8 G G A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 14 G G A . n A 1 15 A 15 15 15 A A A . n A 1 16 A 16 16 16 A A A . n A 1 17 A 17 17 17 A A A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 A 21 21 21 A A A . n A 1 22 C 22 22 22 C C A . n A 1 23 G 23 23 23 G G A . n A 1 24 G 24 24 24 G G A . n A 1 25 A 25 25 25 A A A . n A 1 26 G 26 26 26 G G A . n A 1 27 G 27 27 27 G G A . n A 1 28 A 28 28 28 A A A . n A 1 29 A 29 29 29 A A A . n A 1 30 C 30 30 30 C C A . n A 1 31 C 31 31 31 C C A . n A 1 32 G 32 32 32 G G A . n A 1 33 C 33 33 33 C C A . n A 1 34 U 34 34 34 U U A . n A 1 35 U 35 35 35 U U A . n A 1 36 U 36 36 36 U U A . n A 1 37 U 37 37 37 U U A . n A 1 38 U 38 38 38 U U A . n A 1 39 G 39 39 39 G G A . n A 1 40 G 40 40 40 G G A . n A 1 41 G 41 41 41 G G A . n A 1 42 G 42 42 42 G G A . n A 1 43 U 43 43 43 U U A . n A 1 44 U 44 44 44 U U A . n A 1 45 A 45 45 45 A A A . n A 1 46 A 46 46 46 A A A . n A 1 47 U 47 47 47 U U A . n A 1 48 C 48 48 48 C C A . n A 1 49 U 49 49 49 U U A . n A 1 50 G 50 50 50 G G A . n A 1 51 C 51 51 51 C C A . n A 1 52 A 52 52 52 A A A . n A 1 53 G 53 53 53 G G A . n A 1 54 U 54 54 54 U U A . n A 1 55 G 55 55 ? ? ? A . n A 1 56 A 56 56 ? ? ? A . n A 1 57 A 57 57 57 A A A . n A 1 58 G 58 58 58 G G A . n A 1 59 C 59 59 59 C C A . n A 1 60 U 60 60 60 U U A . n A 1 61 G 61 61 61 G G A . n A 1 62 C 62 62 62 C C A . n A 1 63 A 63 63 63 A A A . n A 1 64 G 64 64 64 G G A . n A 1 65 U 65 65 65 U U A . n A 1 66 A 66 66 66 A A A . n A 1 67 G 67 67 67 G G A . n A 1 68 G 68 68 68 G G A . n A 1 69 G 69 69 69 G G A . n A 1 70 A 70 70 70 A A A . n A 1 71 U 71 71 71 U U A . n A 1 72 A 72 72 72 A A A . n A 1 73 C 73 73 73 C C A . n A 1 74 C 74 74 74 C C A . n A 1 75 U 75 75 75 U U A . n A 1 76 U 76 76 76 U U A . n A 1 77 C 77 77 77 C C A . n A 1 78 U 78 78 78 U U A . n A 1 79 G 79 79 79 G G A . n A 1 80 U 80 80 80 U U A . n A 1 81 C 81 81 81 C C A . n A 1 82 C 82 82 82 C C A . n A 1 83 C 83 83 83 C C A . n A 1 84 G 84 84 84 G G A . n A 1 85 C 85 85 85 C C A . n A 1 86 A 86 86 86 A A A . n A 1 87 C 87 87 87 C C A . n A 1 88 C 88 88 88 C C A . n A 1 89 C 89 89 89 C C A . n A 1 90 G 90 90 90 G G A . n A 1 91 A 91 91 91 A A A . n A 1 92 C 92 92 92 C C A . n A 1 93 A 93 93 93 A A A . n A 1 94 G 94 94 94 G G A . n A 1 95 C 95 95 95 C C A . n A 1 96 U 96 96 96 U U A . n A 1 97 A 97 97 97 A A A . n A 1 98 A 98 98 98 A A A . n A 1 99 C 99 99 99 C C A . n A 1 100 U 100 100 100 U U A . n A 1 101 C 101 101 101 C C A . n A 1 102 C 102 102 102 C C A . n A 1 103 G 103 103 103 G G A . n A 1 104 G 104 104 104 G G A . n A 1 105 A 105 105 105 A A A . n A 1 106 G 106 106 106 G G A . n A 1 107 G 107 107 107 G G A . n A 1 108 C 108 108 108 C C A . n A 1 109 A 109 109 109 A A A . n A 1 110 A 110 110 110 A A A . n A 1 111 U 111 111 111 U U A . n A 1 112 A 112 112 112 A A A . n A 1 113 A 113 113 113 A A A . n A 1 114 A 114 114 114 A A A . n A 1 115 G 115 115 115 G G A . n A 1 116 G 116 116 116 G G A . n A 1 117 A 117 117 117 A A A . n A 1 118 A 118 118 118 A A A . n A 1 119 G 119 119 119 G G A . n A 1 120 G 120 120 120 G G A . n A 1 121 A 121 121 121 A A A . n A 1 122 23G 122 122 122 23G 23G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2BA 1 201 201 2BA 2BA A . C 2 2BA 1 202 202 2BA 2BA A . D 3 MG 1 203 300 MG MG A . E 4 K 1 204 304 K K A . F 5 SO4 1 205 403 SO4 SO4 A . G 6 IRI 1 206 501 IRI IRI A . H 6 IRI 1 207 502 IRI IRI A . I 6 IRI 1 208 503 IRI IRI A . J 6 IRI 1 209 504 IRI IRI A . K 6 IRI 1 210 505 IRI IRI A . L 7 HOH 1 401 401 HOH HOH A . L 7 HOH 2 402 404 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GTP 1 ? PG ? A GTP 1 PG 2 1 Y 1 A GTP 1 ? O1G ? A GTP 1 O1G 3 1 Y 1 A GTP 1 ? O2G ? A GTP 1 O2G 4 1 Y 1 A GTP 1 ? O3G ? A GTP 1 O3G 5 1 Y 1 A A 57 ? P ? A A 57 P 6 1 Y 1 A A 57 ? OP1 ? A A 57 OP1 7 1 Y 1 A A 57 ? OP2 ? A A 57 OP2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHENIX 'model building' . ? 2 PHENIX refinement '(phenix.refine: 1.8.3_1479)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing . ? 6 # _cell.entry_id 4QKA _cell.length_a 116.035 _cell.length_b 116.035 _cell.length_c 114.098 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4QKA _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4QKA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 5.58 _exptl_crystal.density_percent_sol 77.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.3 _exptl_crystal_grow.pdbx_details ;1.5 M (NH4)2SO4, 0.1M HEPES, pH 7.3, and 0.2 M Li2SO4, VAPOR DIFFUSION, SITTING DROP ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2013-11-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.105 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X25 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.105 # _reflns.entry_id 4QKA _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 30 _reflns.d_resolution_high 3.2 _reflns.number_obs 28391 _reflns.number_all ? _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.20 _reflns_shell.d_res_low 3.31 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4QKA _refine.ls_number_reflns_obs 28391 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.009 _refine.ls_d_res_high 3.2 _refine.ls_percent_reflns_obs 99.64 _refine.ls_R_factor_obs 0.1739 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1714 _refine.ls_R_factor_R_free 0.1970 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.08 _refine.ls_number_reflns_R_free 2863 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.37 _refine.pdbx_overall_phase_error 23.13 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2578 _refine_hist.pdbx_number_atoms_ligand 130 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 2710 _refine_hist.d_res_high 3.2 _refine_hist.d_res_low 29.009 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.005 ? ? 3019 ? 'X-RAY DIFFRACTION' f_angle_d 1.049 ? ? 4737 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 18.506 ? ? 1478 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.047 ? ? 614 ? 'X-RAY DIFFRACTION' f_plane_restr 0.005 ? ? 124 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 3.1940 3.2490 1254 0.3196 98.00 0.3838 . . 141 . . . . 'X-RAY DIFFRACTION' . 3.2490 3.3080 1280 0.2751 98.00 0.3382 . . 137 . . . . 'X-RAY DIFFRACTION' . 3.3080 3.3716 1230 0.2704 99.00 0.3154 . . 146 . . . . 'X-RAY DIFFRACTION' . 3.3716 3.4403 1300 0.2613 99.00 0.2699 . . 134 . . . . 'X-RAY DIFFRACTION' . 3.4403 3.5150 1292 0.2500 100.00 0.3291 . . 141 . . . . 'X-RAY DIFFRACTION' . 3.5150 3.5966 1267 0.2613 100.00 0.3059 . . 140 . . . . 'X-RAY DIFFRACTION' . 3.5966 3.6864 1268 0.2384 100.00 0.2300 . . 144 . . . . 'X-RAY DIFFRACTION' . 3.6864 3.7858 1293 0.2259 100.00 0.3084 . . 148 . . . . 'X-RAY DIFFRACTION' . 3.7858 3.8970 1262 0.2029 100.00 0.2219 . . 144 . . . . 'X-RAY DIFFRACTION' . 3.8970 4.0224 1285 0.1915 100.00 0.2187 . . 138 . . . . 'X-RAY DIFFRACTION' . 4.0224 4.1658 1278 0.1920 100.00 0.1874 . . 148 . . . . 'X-RAY DIFFRACTION' . 4.1658 4.3321 1285 0.1765 100.00 0.2115 . . 134 . . . . 'X-RAY DIFFRACTION' . 4.3321 4.5285 1287 0.1648 100.00 0.1803 . . 144 . . . . 'X-RAY DIFFRACTION' . 4.5285 4.7663 1274 0.1630 100.00 0.1527 . . 148 . . . . 'X-RAY DIFFRACTION' . 4.7663 5.0635 1276 0.1538 100.00 0.1706 . . 150 . . . . 'X-RAY DIFFRACTION' . 5.0635 5.4520 1285 0.1351 100.00 0.1584 . . 144 . . . . 'X-RAY DIFFRACTION' . 5.4520 5.9963 1272 0.1429 100.00 0.1599 . . 140 . . . . 'X-RAY DIFFRACTION' . 5.9963 6.8540 1285 0.1309 100.00 0.1442 . . 150 . . . . 'X-RAY DIFFRACTION' . 6.8540 8.5979 1268 0.1325 100.00 0.1639 . . 150 . . . . 'X-RAY DIFFRACTION' . 8.5979 29.0099 1287 0.1259 100.00 0.1759 . . 142 . . . . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 4QKA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4QKA _struct.title 'c-di-AMP riboswitch from Thermoanaerobacter pseudethanolicus, iridium hexamine soak' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4QKA _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'c-di-AMP riboswitch, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 6 ? H N N 6 ? I N N 6 ? J N N 6 ? K N N 6 ? L N N 7 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4QKA _struct_ref.pdbx_db_accession 4QKA _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ;GGUUGCCGAAUCCGAAAGGUACGGAGGAACCGCUUUUUGGGGUUAAUCUGCAGUGAAGCUGCAGUAGGGAUACCUUCUGU CCCGCACCCGACAGCUAACUCCGGAGGCAAUAAAGGAAGGAX ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4QKA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 122 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4QKA _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 122 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 122 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale2 covale both ? A A 121 "O3'" ? ? ? 1_555 A 23G 122 P ? ? A A 121 A 23G 122 1_555 ? ? ? ? ? ? ? 1.599 ? ? metalc1 metalc ? ? A G 2 OP1 ? ? ? 1_555 E K . K ? ? A G 2 A K 204 1_555 ? ? ? ? ? ? ? 3.267 ? ? metalc2 metalc ? ? A G 27 OP2 ? ? ? 1_555 D MG . MG ? ? A G 27 A MG 203 1_555 ? ? ? ? ? ? ? 2.482 ? ? metalc3 metalc ? ? A G 94 OP1 ? ? ? 1_555 D MG . MG ? ? A G 94 A MG 203 1_555 ? ? ? ? ? ? ? 2.695 ? ? metalc4 metalc ? ? A C 95 OP2 ? ? ? 1_555 D MG . MG ? ? A C 95 A MG 203 1_555 ? ? ? ? ? ? ? 2.243 ? ? metalc5 metalc ? ? A U 96 O4 ? ? ? 1_555 D MG . MG ? ? A U 96 A MG 203 1_555 ? ? ? ? ? ? ? 2.589 ? ? hydrog1 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 109 N1 ? ? A U 4 A A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 109 N6 ? ? A U 4 A A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 108 N3 ? ? A G 5 A C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 108 O2 ? ? A G 5 A C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 108 N4 ? ? A G 5 A C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 107 N1 ? ? A C 6 A G 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 107 O6 ? ? A C 6 A G 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 107 N2 ? ? A C 6 A G 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 106 N1 ? ? A C 7 A G 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 106 O6 ? ? A C 7 A G 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 106 N2 ? ? A C 7 A G 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 105 N7 ? ? A G 8 A A 105 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog13 hydrog ? ? A G 8 N3 ? ? ? 1_555 A A 105 N6 ? ? A G 8 A A 105 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog14 hydrog ? ? A A 9 N3 ? ? ? 1_555 A G 103 N2 ? ? A A 9 A G 103 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog15 hydrog ? ? A U 11 N3 ? ? ? 1_555 A U 20 O2 ? ? A U 11 A U 20 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog16 hydrog ? ? A U 11 O4 ? ? ? 1_555 A U 20 N3 ? ? A U 11 A U 20 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog17 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 18 N1 ? ? A C 13 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 18 O6 ? ? A C 13 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 18 N2 ? ? A C 13 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 14 N2 ? ? ? 1_555 A A 17 N7 ? ? A G 14 A A 17 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog24 hydrog ? ? A A 21 N6 ? ? ? 1_555 A G 104 N3 ? ? A A 21 A G 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog25 hydrog ? ? A A 21 N7 ? ? ? 1_555 A G 104 N2 ? ? A A 21 A G 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog26 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 103 N1 ? ? A C 22 A G 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 103 O6 ? ? A C 22 A G 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 103 N2 ? ? A C 22 A G 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 102 N3 ? ? A G 23 A C 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 102 O2 ? ? A G 23 A C 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 102 N4 ? ? A G 23 A C 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 101 N3 ? ? A G 24 A C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 101 O2 ? ? A G 24 A C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 101 N4 ? ? A G 24 A C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 102 N3 ? ? A G 24 A C 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 102 O2 ? ? A G 24 A C 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 102 N4 ? ? A G 24 A C 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 25 N1 ? ? ? 1_555 A U 100 N3 ? ? A A 25 A U 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 25 N6 ? ? ? 1_555 A U 100 O4 ? ? A A 25 A U 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 99 N3 ? ? A G 26 A C 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 99 O2 ? ? A G 26 A C 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 99 N4 ? ? A G 26 A C 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 27 N2 ? ? ? 1_555 A A 98 N7 ? ? A G 27 A A 98 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog44 hydrog ? ? A G 27 N3 ? ? ? 1_555 A A 98 N6 ? ? A G 27 A A 98 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog45 hydrog ? ? A C 30 N4 ? ? ? 1_555 A C 95 O2 ? ? A C 30 A C 95 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog46 hydrog ? ? A C 31 N3 ? ? ? 1_555 A G 94 N1 ? ? A C 31 A G 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 31 N4 ? ? ? 1_555 A G 94 O6 ? ? A C 31 A G 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 31 O2 ? ? ? 1_555 A G 94 N2 ? ? A C 31 A G 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 91 N1 ? ? A U 37 A A 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A U 37 O4 ? ? ? 1_555 A A 91 N6 ? ? A U 37 A A 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 39 O6 ? ? ? 1_555 A G 90 N2 ? ? A G 39 A G 90 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog52 hydrog ? ? A G 39 N1 ? ? ? 1_555 A C 92 N3 ? ? A G 39 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 39 N2 ? ? ? 1_555 A C 92 O2 ? ? A G 39 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 39 O6 ? ? ? 1_555 A C 92 N4 ? ? A G 39 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 40 N1 ? ? ? 1_555 A C 89 N3 ? ? A G 40 A C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 40 N2 ? ? ? 1_555 A C 89 O2 ? ? A G 40 A C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 40 O6 ? ? ? 1_555 A C 89 N4 ? ? A G 40 A C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 40 N2 ? ? ? 1_555 A A 93 N1 ? ? A G 40 A A 93 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog59 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 88 N3 ? ? A G 41 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 88 O2 ? ? A G 41 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 88 N4 ? ? A G 41 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 87 N3 ? ? A G 42 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 87 O2 ? ? A G 42 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 87 N4 ? ? A G 42 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A U 43 N3 ? ? ? 1_555 A A 86 N1 ? ? A U 43 A A 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A U 43 O4 ? ? ? 1_555 A A 86 N6 ? ? A U 43 A A 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A U 44 O2 ? ? ? 1_555 A C 85 N4 ? ? A U 44 A C 85 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog68 hydrog ? ? A A 45 N3 ? ? ? 1_555 A G 67 N2 ? ? A A 45 A G 67 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog69 hydrog ? ? A U 47 N3 ? ? ? 1_555 A U 65 O2 ? ? A U 47 A U 65 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog70 hydrog ? ? A U 47 O4 ? ? ? 1_555 A U 65 N3 ? ? A U 47 A U 65 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog71 hydrog ? ? A C 48 N3 ? ? ? 1_555 A G 64 N1 ? ? A C 48 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 48 N4 ? ? ? 1_555 A G 64 O6 ? ? A C 48 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 48 O2 ? ? ? 1_555 A G 64 N2 ? ? A C 48 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A U 49 N3 ? ? ? 1_555 A A 63 N1 ? ? A U 49 A A 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A U 49 O4 ? ? ? 1_555 A A 63 N6 ? ? A U 49 A A 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 50 N1 ? ? ? 1_555 A C 62 N3 ? ? A G 50 A C 62 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog77 hydrog ? ? A C 51 N3 ? ? ? 1_555 A G 61 N1 ? ? A C 51 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 51 N4 ? ? ? 1_555 A G 61 O6 ? ? A C 51 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A C 51 O2 ? ? ? 1_555 A G 61 N2 ? ? A C 51 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A A 52 N1 ? ? ? 1_555 A U 60 N3 ? ? A A 52 A U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A A 52 N6 ? ? ? 1_555 A U 60 O4 ? ? A A 52 A U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A G 53 N1 ? ? ? 1_555 A C 59 N3 ? ? A G 53 A C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A G 53 N2 ? ? ? 1_555 A C 59 O2 ? ? A G 53 A C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A G 53 O6 ? ? ? 1_555 A C 59 N4 ? ? A G 53 A C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A A 66 N6 ? ? ? 1_555 A G 84 N3 ? ? A A 66 A G 84 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog86 hydrog ? ? A A 66 N7 ? ? ? 1_555 A G 84 N2 ? ? A A 66 A G 84 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog87 hydrog ? ? A G 67 N1 ? ? ? 1_555 A C 83 N3 ? ? A G 67 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 67 N2 ? ? ? 1_555 A C 83 O2 ? ? A G 67 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 67 O6 ? ? ? 1_555 A C 83 N4 ? ? A G 67 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A G 68 N1 ? ? ? 1_555 A C 82 N3 ? ? A G 68 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A G 68 N2 ? ? ? 1_555 A C 82 O2 ? ? A G 68 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A G 68 O6 ? ? ? 1_555 A C 82 N4 ? ? A G 68 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A G 69 N1 ? ? ? 1_555 A C 81 N3 ? ? A G 69 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A G 69 N2 ? ? ? 1_555 A C 81 O2 ? ? A G 69 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A G 69 O6 ? ? ? 1_555 A C 81 N4 ? ? A G 69 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A A 70 N1 ? ? ? 1_555 A U 80 N3 ? ? A A 70 A U 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A A 70 N6 ? ? ? 1_555 A U 80 O4 ? ? A A 70 A U 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A U 71 N3 ? ? ? 1_555 A G 79 O6 ? ? A U 71 A G 79 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog99 hydrog ? ? A U 71 O2 ? ? ? 1_555 A G 79 N1 ? ? A U 71 A G 79 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog100 hydrog ? ? A C 73 N3 ? ? ? 1_555 A G 120 N1 ? ? A C 73 A G 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A C 73 N4 ? ? ? 1_555 A G 120 O6 ? ? A C 73 A G 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A C 73 O2 ? ? ? 1_555 A G 120 N2 ? ? A C 73 A G 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A C 74 N3 ? ? ? 1_555 A G 119 N1 ? ? A C 74 A G 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A C 74 N4 ? ? ? 1_555 A G 119 O6 ? ? A C 74 A G 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A C 74 O2 ? ? ? 1_555 A G 119 N2 ? ? A C 74 A G 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A U 75 N3 ? ? ? 1_555 A A 118 N1 ? ? A U 75 A A 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? A U 75 O4 ? ? ? 1_555 A A 118 N6 ? ? A U 75 A A 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? A U 76 N3 ? ? ? 1_555 A A 117 N1 ? ? A U 76 A A 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A U 76 O4 ? ? ? 1_555 A A 117 N6 ? ? A U 76 A A 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A C 77 N3 ? ? ? 1_555 A G 116 N1 ? ? A C 77 A G 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A C 77 N4 ? ? ? 1_555 A G 116 O6 ? ? A C 77 A G 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A C 77 O2 ? ? ? 1_555 A G 116 N2 ? ? A C 77 A G 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? A U 78 N3 ? ? ? 1_555 A G 115 O6 ? ? A U 78 A G 115 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog114 hydrog ? ? A U 78 O2 ? ? ? 1_555 A G 115 N1 ? ? A U 78 A G 115 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog115 hydrog ? ? A G 79 N2 ? ? ? 1_555 A A 113 N3 ? ? A G 79 A A 113 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog116 hydrog ? ? A G 90 N3 ? ? ? 1_555 A C 92 N4 ? ? A G 90 A C 92 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A G 27 ? A G 27 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP1 ? A G 94 ? A G 94 ? 1_555 74.7 ? 2 OP2 ? A G 27 ? A G 27 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP2 ? A C 95 ? A C 95 ? 1_555 167.9 ? 3 OP1 ? A G 94 ? A G 94 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP2 ? A C 95 ? A C 95 ? 1_555 98.2 ? 4 OP2 ? A G 27 ? A G 27 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O4 ? A U 96 ? A U 96 ? 1_555 83.2 ? 5 OP1 ? A G 94 ? A G 94 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O4 ? A U 96 ? A U 96 ? 1_555 102.8 ? 6 OP2 ? A C 95 ? A C 95 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O4 ? A U 96 ? A U 96 ? 1_555 108.1 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 2BA 201 ? 15 'BINDING SITE FOR RESIDUE 2BA A 201' AC2 Software A 2BA 202 ? 14 'BINDING SITE FOR RESIDUE 2BA A 202' AC3 Software A MG 203 ? 4 'BINDING SITE FOR RESIDUE MG A 203' AC4 Software A K 204 ? 2 'BINDING SITE FOR RESIDUE K A 204' AC5 Software A SO4 205 ? 3 'BINDING SITE FOR RESIDUE SO4 A 205' AC6 Software A IRI 206 ? 4 'BINDING SITE FOR RESIDUE IRI A 206' AC7 Software A IRI 207 ? 4 'BINDING SITE FOR RESIDUE IRI A 207' AC8 Software A IRI 208 ? 4 'BINDING SITE FOR RESIDUE IRI A 208' AC9 Software A IRI 209 ? 5 'BINDING SITE FOR RESIDUE IRI A 209' BC1 Software A IRI 210 ? 5 'BINDING SITE FOR RESIDUE IRI A 210' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 G A 5 ? G A 5 . ? 1_555 ? 2 AC1 15 C A 6 ? C A 6 . ? 1_555 ? 3 AC1 15 C A 7 ? C A 7 . ? 1_555 ? 4 AC1 15 G A 8 ? G A 8 . ? 1_555 ? 5 AC1 15 A A 45 ? A A 45 . ? 1_555 ? 6 AC1 15 G A 68 ? G A 68 . ? 1_555 ? 7 AC1 15 G A 69 ? G A 69 . ? 1_555 ? 8 AC1 15 A A 70 ? A A 70 . ? 1_555 ? 9 AC1 15 U A 71 ? U A 71 . ? 1_555 ? 10 AC1 15 A A 72 ? A A 72 . ? 1_555 ? 11 AC1 15 C A 82 ? C A 82 . ? 1_555 ? 12 AC1 15 C A 83 ? C A 83 . ? 1_555 ? 13 AC1 15 G A 107 ? G A 107 . ? 1_555 ? 14 AC1 15 C A 108 ? C A 108 . ? 1_555 ? 15 AC1 15 A A 109 ? A A 109 . ? 1_555 ? 16 AC2 14 A A 9 ? A A 9 . ? 1_555 ? 17 AC2 14 G A 23 ? G A 23 . ? 1_555 ? 18 AC2 14 G A 24 ? G A 24 . ? 1_555 ? 19 AC2 14 A A 25 ? A A 25 . ? 1_555 ? 20 AC2 14 G A 26 ? G A 26 . ? 1_555 ? 21 AC2 14 G A 41 ? G A 41 . ? 1_555 ? 22 AC2 14 G A 42 ? G A 42 . ? 1_555 ? 23 AC2 14 U A 43 ? U A 43 . ? 1_555 ? 24 AC2 14 U A 44 ? U A 44 . ? 1_555 ? 25 AC2 14 C A 88 ? C A 88 . ? 1_555 ? 26 AC2 14 C A 89 ? C A 89 . ? 1_555 ? 27 AC2 14 A A 93 ? A A 93 . ? 1_555 ? 28 AC2 14 C A 102 ? C A 102 . ? 1_555 ? 29 AC2 14 G A 103 ? G A 103 . ? 1_555 ? 30 AC3 4 G A 27 ? G A 27 . ? 1_555 ? 31 AC3 4 G A 94 ? G A 94 . ? 1_555 ? 32 AC3 4 C A 95 ? C A 95 . ? 1_555 ? 33 AC3 4 U A 96 ? U A 96 . ? 1_555 ? 34 AC4 2 GTP A 1 ? GTP A 1 . ? 1_555 ? 35 AC4 2 G A 2 ? G A 2 . ? 1_555 ? 36 AC5 3 A A 29 ? A A 29 . ? 1_555 ? 37 AC5 3 C A 95 ? C A 95 . ? 1_555 ? 38 AC5 3 U A 96 ? U A 96 . ? 1_555 ? 39 AC6 4 A A 118 ? A A 118 . ? 1_555 ? 40 AC6 4 G A 119 ? G A 119 . ? 1_555 ? 41 AC6 4 G A 120 ? G A 120 . ? 1_555 ? 42 AC6 4 A A 121 ? A A 121 . ? 1_555 ? 43 AC7 4 G A 19 ? G A 19 . ? 1_555 ? 44 AC7 4 U A 20 ? U A 20 . ? 1_555 ? 45 AC7 4 G A 104 ? G A 104 . ? 1_555 ? 46 AC7 4 A A 105 ? A A 105 . ? 1_555 ? 47 AC8 4 G A 42 ? G A 42 . ? 1_555 ? 48 AC8 4 U A 43 ? U A 43 . ? 1_555 ? 49 AC8 4 U A 44 ? U A 44 . ? 1_555 ? 50 AC8 4 U A 47 ? U A 47 . ? 1_555 ? 51 AC9 5 A A 25 ? A A 25 . ? 1_555 ? 52 AC9 5 G A 26 ? G A 26 . ? 1_555 ? 53 AC9 5 G A 27 ? G A 27 . ? 1_555 ? 54 AC9 5 C A 95 ? C A 95 . ? 1_555 ? 55 AC9 5 U A 96 ? U A 96 . ? 1_555 ? 56 BC1 5 A A 63 ? A A 63 . ? 1_555 ? 57 BC1 5 G A 64 ? G A 64 . ? 1_555 ? 58 BC1 5 U A 65 ? U A 65 . ? 1_555 ? 59 BC1 5 G A 84 ? G A 84 . ? 1_555 ? 60 BC1 5 C A 85 ? C A 85 . ? 1_555 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C2 _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 C _pdbx_validate_rmsd_angle.auth_seq_id_1 92 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N1 _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 C _pdbx_validate_rmsd_angle.auth_seq_id_2 92 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 C _pdbx_validate_rmsd_angle.auth_seq_id_3 92 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 125.40 _pdbx_validate_rmsd_angle.angle_target_value 118.80 _pdbx_validate_rmsd_angle.angle_deviation 6.60 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GTP 1 A GTP 1 ? G "GUANOSINE-5'-TRIPHOSPHATE" 2 A 23G 122 A 23G 122 ? G ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A G 55 ? A G 55 2 1 Y 1 A A 56 ? A A 56 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 23G P P N N 1 23G N1 N N N 2 23G C2 C N N 3 23G N2 N N N 4 23G N3 N N N 5 23G C4 C Y N 6 23G C5 C Y N 7 23G C6 C N N 8 23G O6 O N N 9 23G N7 N Y N 10 23G C8 C Y N 11 23G N9 N Y N 12 23G PC P N N 13 23G "C1'" C N R 14 23G "C2'" C N R 15 23G "O2'" O N N 16 23G "C3'" C N R 17 23G "O3'" O N N 18 23G "C4'" C N R 19 23G "O4'" O N N 20 23G "C5'" C N N 21 23G "O5'" O N N 22 23G OC1 O N N 23 23G OC2 O N N 24 23G OP1 O N N 25 23G OP2 O N N 26 23G HN1 H N N 27 23G HN2 H N N 28 23G HN2A H N N 29 23G H8 H N N 30 23G "H1'" H N N 31 23G "H2'" H N N 32 23G "H3'" H N N 33 23G "H4'" H N N 34 23G "H5'" H N N 35 23G "H5'A" H N N 36 23G OP3 O N N 37 23G H11 H N N 38 23G HOP2 H N N 39 23G HOP3 H N N 40 2BA P P N R 41 2BA O1P O N N 42 2BA O2P O N N 43 2BA "O5'" O N N 44 2BA "C5'" C N N 45 2BA "C4'" C N R 46 2BA "O4'" O N N 47 2BA "C3'" C N S 48 2BA "O3'" O N N 49 2BA "C2'" C N R 50 2BA "O2'" O N N 51 2BA "C1'" C N R 52 2BA N9 N Y N 53 2BA C8 C Y N 54 2BA N7 N Y N 55 2BA C5 C Y N 56 2BA C6 C Y N 57 2BA N6 N N N 58 2BA N1 N Y N 59 2BA C2 C Y N 60 2BA N3 N Y N 61 2BA C4 C Y N 62 2BA P1 P N R 63 2BA O1P1 O N N 64 2BA O2P1 O N N 65 2BA "O5'1" O N N 66 2BA "C5'1" C N N 67 2BA "C4'1" C N R 68 2BA "O4'1" O N N 69 2BA "C3'1" C N S 70 2BA "O3'1" O N N 71 2BA "C2'1" C N R 72 2BA "O2'1" O N N 73 2BA "C1'1" C N R 74 2BA N91 N Y N 75 2BA C81 C Y N 76 2BA N71 N Y N 77 2BA C51 C Y N 78 2BA C61 C Y N 79 2BA N61 N N N 80 2BA N11 N Y N 81 2BA C21 C Y N 82 2BA N31 N Y N 83 2BA C41 C Y N 84 2BA "H5'" H N N 85 2BA "H5'A" H N N 86 2BA "H4'" H N N 87 2BA "H3'" H N N 88 2BA "H2'" H N N 89 2BA "HO2'" H N N 90 2BA "H1'" H N N 91 2BA H8 H N N 92 2BA HN6 H N N 93 2BA HN6A H N N 94 2BA H2 H N N 95 2BA "HC5'" H N N 96 2BA HC5A H N N 97 2BA "HC4'" H N N 98 2BA "HC3'" H N N 99 2BA "HC2'" H N N 100 2BA HO2A H N N 101 2BA "HC1'" H N N 102 2BA HC8 H N N 103 2BA H1N6 H N N 104 2BA H1NA H N N 105 2BA HC2 H N N 106 2BA H2P H N N 107 2BA H2OP H N N 108 A OP3 O N N 109 A P P N N 110 A OP1 O N N 111 A OP2 O N N 112 A "O5'" O N N 113 A "C5'" C N N 114 A "C4'" C N R 115 A "O4'" O N N 116 A "C3'" C N S 117 A "O3'" O N N 118 A "C2'" C N R 119 A "O2'" O N N 120 A "C1'" C N R 121 A N9 N Y N 122 A C8 C Y N 123 A N7 N Y N 124 A C5 C Y N 125 A C6 C Y N 126 A N6 N N N 127 A N1 N Y N 128 A C2 C Y N 129 A N3 N Y N 130 A C4 C Y N 131 A HOP3 H N N 132 A HOP2 H N N 133 A "H5'" H N N 134 A "H5''" H N N 135 A "H4'" H N N 136 A "H3'" H N N 137 A "HO3'" H N N 138 A "H2'" H N N 139 A "HO2'" H N N 140 A "H1'" H N N 141 A H8 H N N 142 A H61 H N N 143 A H62 H N N 144 A H2 H N N 145 C OP3 O N N 146 C P P N N 147 C OP1 O N N 148 C OP2 O N N 149 C "O5'" O N N 150 C "C5'" C N N 151 C "C4'" C N R 152 C "O4'" O N N 153 C "C3'" C N S 154 C "O3'" O N N 155 C "C2'" C N R 156 C "O2'" O N N 157 C "C1'" C N R 158 C N1 N N N 159 C C2 C N N 160 C O2 O N N 161 C N3 N N N 162 C C4 C N N 163 C N4 N N N 164 C C5 C N N 165 C C6 C N N 166 C HOP3 H N N 167 C HOP2 H N N 168 C "H5'" H N N 169 C "H5''" H N N 170 C "H4'" H N N 171 C "H3'" H N N 172 C "HO3'" H N N 173 C "H2'" H N N 174 C "HO2'" H N N 175 C "H1'" H N N 176 C H41 H N N 177 C H42 H N N 178 C H5 H N N 179 C H6 H N N 180 G OP3 O N N 181 G P P N N 182 G OP1 O N N 183 G OP2 O N N 184 G "O5'" O N N 185 G "C5'" C N N 186 G "C4'" C N R 187 G "O4'" O N N 188 G "C3'" C N S 189 G "O3'" O N N 190 G "C2'" C N R 191 G "O2'" O N N 192 G "C1'" C N R 193 G N9 N Y N 194 G C8 C Y N 195 G N7 N Y N 196 G C5 C Y N 197 G C6 C N N 198 G O6 O N N 199 G N1 N N N 200 G C2 C N N 201 G N2 N N N 202 G N3 N N N 203 G C4 C Y N 204 G HOP3 H N N 205 G HOP2 H N N 206 G "H5'" H N N 207 G "H5''" H N N 208 G "H4'" H N N 209 G "H3'" H N N 210 G "HO3'" H N N 211 G "H2'" H N N 212 G "HO2'" H N N 213 G "H1'" H N N 214 G H8 H N N 215 G H1 H N N 216 G H21 H N N 217 G H22 H N N 218 GTP PG P N N 219 GTP O1G O N N 220 GTP O2G O N N 221 GTP O3G O N N 222 GTP O3B O N N 223 GTP PB P N N 224 GTP O1B O N N 225 GTP O2B O N N 226 GTP O3A O N N 227 GTP PA P N N 228 GTP O1A O N N 229 GTP O2A O N N 230 GTP "O5'" O N N 231 GTP "C5'" C N N 232 GTP "C4'" C N R 233 GTP "O4'" O N N 234 GTP "C3'" C N S 235 GTP "O3'" O N N 236 GTP "C2'" C N R 237 GTP "O2'" O N N 238 GTP "C1'" C N R 239 GTP N9 N Y N 240 GTP C8 C Y N 241 GTP N7 N Y N 242 GTP C5 C Y N 243 GTP C6 C N N 244 GTP O6 O N N 245 GTP N1 N N N 246 GTP C2 C N N 247 GTP N2 N N N 248 GTP N3 N N N 249 GTP C4 C Y N 250 GTP HOG2 H N N 251 GTP HOG3 H N N 252 GTP HOB2 H N N 253 GTP HOA2 H N N 254 GTP "H5'" H N N 255 GTP "H5''" H N N 256 GTP "H4'" H N N 257 GTP "H3'" H N N 258 GTP "HO3'" H N N 259 GTP "H2'" H N N 260 GTP "HO2'" H N N 261 GTP "H1'" H N N 262 GTP H8 H N N 263 GTP HN1 H N N 264 GTP HN21 H N N 265 GTP HN22 H N N 266 HOH O O N N 267 HOH H1 H N N 268 HOH H2 H N N 269 IRI IR IR N N 270 IRI N1 N N N 271 IRI N2 N N N 272 IRI N3 N N N 273 IRI N4 N N N 274 IRI N5 N N N 275 IRI N6 N N N 276 IRI HN11 H N N 277 IRI HN12 H N N 278 IRI HN13 H N N 279 IRI HN21 H N N 280 IRI HN22 H N N 281 IRI HN23 H N N 282 IRI HN31 H N N 283 IRI HN32 H N N 284 IRI HN33 H N N 285 IRI HN41 H N N 286 IRI HN42 H N N 287 IRI HN43 H N N 288 IRI HN51 H N N 289 IRI HN52 H N N 290 IRI HN53 H N N 291 IRI HN61 H N N 292 IRI HN62 H N N 293 IRI HN63 H N N 294 K K K N N 295 MG MG MG N N 296 SO4 S S N N 297 SO4 O1 O N N 298 SO4 O2 O N N 299 SO4 O3 O N N 300 SO4 O4 O N N 301 U OP3 O N N 302 U P P N N 303 U OP1 O N N 304 U OP2 O N N 305 U "O5'" O N N 306 U "C5'" C N N 307 U "C4'" C N R 308 U "O4'" O N N 309 U "C3'" C N S 310 U "O3'" O N N 311 U "C2'" C N R 312 U "O2'" O N N 313 U "C1'" C N R 314 U N1 N N N 315 U C2 C N N 316 U O2 O N N 317 U N3 N N N 318 U C4 C N N 319 U O4 O N N 320 U C5 C N N 321 U C6 C N N 322 U HOP3 H N N 323 U HOP2 H N N 324 U "H5'" H N N 325 U "H5''" H N N 326 U "H4'" H N N 327 U "H3'" H N N 328 U "HO3'" H N N 329 U "H2'" H N N 330 U "HO2'" H N N 331 U "H1'" H N N 332 U H3 H N N 333 U H5 H N N 334 U H6 H N N 335 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 23G P "O5'" sing N N 1 23G P OP1 doub N N 2 23G P OP2 sing N N 3 23G N1 C2 sing N N 4 23G N1 C6 sing N N 5 23G N1 HN1 sing N N 6 23G C2 N2 sing N N 7 23G C2 N3 doub N N 8 23G N2 HN2 sing N N 9 23G N2 HN2A sing N N 10 23G N3 C4 sing N N 11 23G C4 C5 doub Y N 12 23G C4 N9 sing Y N 13 23G C5 C6 sing N N 14 23G C5 N7 sing Y N 15 23G C6 O6 doub N N 16 23G N7 C8 doub Y N 17 23G C8 N9 sing Y N 18 23G C8 H8 sing N N 19 23G N9 "C1'" sing N N 20 23G PC "O2'" sing N N 21 23G PC "O3'" sing N N 22 23G PC OC1 sing N N 23 23G PC OC2 doub N N 24 23G "C1'" "C2'" sing N N 25 23G "C1'" "O4'" sing N N 26 23G "C1'" "H1'" sing N N 27 23G "C2'" "O2'" sing N N 28 23G "C2'" "C3'" sing N N 29 23G "C2'" "H2'" sing N N 30 23G "C3'" "O3'" sing N N 31 23G "C3'" "C4'" sing N N 32 23G "C3'" "H3'" sing N N 33 23G "C4'" "O4'" sing N N 34 23G "C4'" "C5'" sing N N 35 23G "C4'" "H4'" sing N N 36 23G "C5'" "O5'" sing N N 37 23G "C5'" "H5'" sing N N 38 23G "C5'" "H5'A" sing N N 39 23G P OP3 sing N N 40 23G OC1 H11 sing N N 41 23G OP2 HOP2 sing N N 42 23G OP3 HOP3 sing N N 43 2BA P O1P doub N N 44 2BA P O2P sing N N 45 2BA P "O5'" sing N N 46 2BA P "O3'1" sing N N 47 2BA "O5'" "C5'" sing N N 48 2BA "C5'" "C4'" sing N N 49 2BA "C4'" "O4'" sing N N 50 2BA "C4'" "C3'" sing N N 51 2BA "O4'" "C1'" sing N N 52 2BA "C3'" "O3'" sing N N 53 2BA "C3'" "C2'" sing N N 54 2BA "O3'" P1 sing N N 55 2BA "C2'" "O2'" sing N N 56 2BA "C2'" "C1'" sing N N 57 2BA "C1'" N9 sing N N 58 2BA N9 C8 sing Y N 59 2BA N9 C4 sing Y N 60 2BA C8 N7 doub Y N 61 2BA N7 C5 sing Y N 62 2BA C5 C6 doub Y N 63 2BA C5 C4 sing Y N 64 2BA C6 N6 sing N N 65 2BA C6 N1 sing Y N 66 2BA N1 C2 doub Y N 67 2BA C2 N3 sing Y N 68 2BA N3 C4 doub Y N 69 2BA P1 O1P1 doub N N 70 2BA P1 O2P1 sing N N 71 2BA P1 "O5'1" sing N N 72 2BA "O5'1" "C5'1" sing N N 73 2BA "C5'1" "C4'1" sing N N 74 2BA "C4'1" "O4'1" sing N N 75 2BA "C4'1" "C3'1" sing N N 76 2BA "O4'1" "C1'1" sing N N 77 2BA "C3'1" "O3'1" sing N N 78 2BA "C3'1" "C2'1" sing N N 79 2BA "C2'1" "O2'1" sing N N 80 2BA "C2'1" "C1'1" sing N N 81 2BA "C1'1" N91 sing N N 82 2BA N91 C81 sing Y N 83 2BA N91 C41 sing Y N 84 2BA C81 N71 doub Y N 85 2BA N71 C51 sing Y N 86 2BA C51 C61 doub Y N 87 2BA C51 C41 sing Y N 88 2BA C61 N61 sing N N 89 2BA C61 N11 sing Y N 90 2BA N11 C21 doub Y N 91 2BA C21 N31 sing Y N 92 2BA N31 C41 doub Y N 93 2BA "C5'" "H5'" sing N N 94 2BA "C5'" "H5'A" sing N N 95 2BA "C4'" "H4'" sing N N 96 2BA "C3'" "H3'" sing N N 97 2BA "C2'" "H2'" sing N N 98 2BA "O2'" "HO2'" sing N N 99 2BA "C1'" "H1'" sing N N 100 2BA C8 H8 sing N N 101 2BA N6 HN6 sing N N 102 2BA N6 HN6A sing N N 103 2BA C2 H2 sing N N 104 2BA "C5'1" "HC5'" sing N N 105 2BA "C5'1" HC5A sing N N 106 2BA "C4'1" "HC4'" sing N N 107 2BA "C3'1" "HC3'" sing N N 108 2BA "C2'1" "HC2'" sing N N 109 2BA "O2'1" HO2A sing N N 110 2BA "C1'1" "HC1'" sing N N 111 2BA C81 HC8 sing N N 112 2BA N61 H1N6 sing N N 113 2BA N61 H1NA sing N N 114 2BA C21 HC2 sing N N 115 2BA O2P H2P sing N N 116 2BA O2P1 H2OP sing N N 117 A OP3 P sing N N 118 A OP3 HOP3 sing N N 119 A P OP1 doub N N 120 A P OP2 sing N N 121 A P "O5'" sing N N 122 A OP2 HOP2 sing N N 123 A "O5'" "C5'" sing N N 124 A "C5'" "C4'" sing N N 125 A "C5'" "H5'" sing N N 126 A "C5'" "H5''" sing N N 127 A "C4'" "O4'" sing N N 128 A "C4'" "C3'" sing N N 129 A "C4'" "H4'" sing N N 130 A "O4'" "C1'" sing N N 131 A "C3'" "O3'" sing N N 132 A "C3'" "C2'" sing N N 133 A "C3'" "H3'" sing N N 134 A "O3'" "HO3'" sing N N 135 A "C2'" "O2'" sing N N 136 A "C2'" "C1'" sing N N 137 A "C2'" "H2'" sing N N 138 A "O2'" "HO2'" sing N N 139 A "C1'" N9 sing N N 140 A "C1'" "H1'" sing N N 141 A N9 C8 sing Y N 142 A N9 C4 sing Y N 143 A C8 N7 doub Y N 144 A C8 H8 sing N N 145 A N7 C5 sing Y N 146 A C5 C6 sing Y N 147 A C5 C4 doub Y N 148 A C6 N6 sing N N 149 A C6 N1 doub Y N 150 A N6 H61 sing N N 151 A N6 H62 sing N N 152 A N1 C2 sing Y N 153 A C2 N3 doub Y N 154 A C2 H2 sing N N 155 A N3 C4 sing Y N 156 C OP3 P sing N N 157 C OP3 HOP3 sing N N 158 C P OP1 doub N N 159 C P OP2 sing N N 160 C P "O5'" sing N N 161 C OP2 HOP2 sing N N 162 C "O5'" "C5'" sing N N 163 C "C5'" "C4'" sing N N 164 C "C5'" "H5'" sing N N 165 C "C5'" "H5''" sing N N 166 C "C4'" "O4'" sing N N 167 C "C4'" "C3'" sing N N 168 C "C4'" "H4'" sing N N 169 C "O4'" "C1'" sing N N 170 C "C3'" "O3'" sing N N 171 C "C3'" "C2'" sing N N 172 C "C3'" "H3'" sing N N 173 C "O3'" "HO3'" sing N N 174 C "C2'" "O2'" sing N N 175 C "C2'" "C1'" sing N N 176 C "C2'" "H2'" sing N N 177 C "O2'" "HO2'" sing N N 178 C "C1'" N1 sing N N 179 C "C1'" "H1'" sing N N 180 C N1 C2 sing N N 181 C N1 C6 sing N N 182 C C2 O2 doub N N 183 C C2 N3 sing N N 184 C N3 C4 doub N N 185 C C4 N4 sing N N 186 C C4 C5 sing N N 187 C N4 H41 sing N N 188 C N4 H42 sing N N 189 C C5 C6 doub N N 190 C C5 H5 sing N N 191 C C6 H6 sing N N 192 G OP3 P sing N N 193 G OP3 HOP3 sing N N 194 G P OP1 doub N N 195 G P OP2 sing N N 196 G P "O5'" sing N N 197 G OP2 HOP2 sing N N 198 G "O5'" "C5'" sing N N 199 G "C5'" "C4'" sing N N 200 G "C5'" "H5'" sing N N 201 G "C5'" "H5''" sing N N 202 G "C4'" "O4'" sing N N 203 G "C4'" "C3'" sing N N 204 G "C4'" "H4'" sing N N 205 G "O4'" "C1'" sing N N 206 G "C3'" "O3'" sing N N 207 G "C3'" "C2'" sing N N 208 G "C3'" "H3'" sing N N 209 G "O3'" "HO3'" sing N N 210 G "C2'" "O2'" sing N N 211 G "C2'" "C1'" sing N N 212 G "C2'" "H2'" sing N N 213 G "O2'" "HO2'" sing N N 214 G "C1'" N9 sing N N 215 G "C1'" "H1'" sing N N 216 G N9 C8 sing Y N 217 G N9 C4 sing Y N 218 G C8 N7 doub Y N 219 G C8 H8 sing N N 220 G N7 C5 sing Y N 221 G C5 C6 sing N N 222 G C5 C4 doub Y N 223 G C6 O6 doub N N 224 G C6 N1 sing N N 225 G N1 C2 sing N N 226 G N1 H1 sing N N 227 G C2 N2 sing N N 228 G C2 N3 doub N N 229 G N2 H21 sing N N 230 G N2 H22 sing N N 231 G N3 C4 sing N N 232 GTP PG O1G doub N N 233 GTP PG O2G sing N N 234 GTP PG O3G sing N N 235 GTP PG O3B sing N N 236 GTP O2G HOG2 sing N N 237 GTP O3G HOG3 sing N N 238 GTP O3B PB sing N N 239 GTP PB O1B doub N N 240 GTP PB O2B sing N N 241 GTP PB O3A sing N N 242 GTP O2B HOB2 sing N N 243 GTP O3A PA sing N N 244 GTP PA O1A doub N N 245 GTP PA O2A sing N N 246 GTP PA "O5'" sing N N 247 GTP O2A HOA2 sing N N 248 GTP "O5'" "C5'" sing N N 249 GTP "C5'" "C4'" sing N N 250 GTP "C5'" "H5'" sing N N 251 GTP "C5'" "H5''" sing N N 252 GTP "C4'" "O4'" sing N N 253 GTP "C4'" "C3'" sing N N 254 GTP "C4'" "H4'" sing N N 255 GTP "O4'" "C1'" sing N N 256 GTP "C3'" "O3'" sing N N 257 GTP "C3'" "C2'" sing N N 258 GTP "C3'" "H3'" sing N N 259 GTP "O3'" "HO3'" sing N N 260 GTP "C2'" "O2'" sing N N 261 GTP "C2'" "C1'" sing N N 262 GTP "C2'" "H2'" sing N N 263 GTP "O2'" "HO2'" sing N N 264 GTP "C1'" N9 sing N N 265 GTP "C1'" "H1'" sing N N 266 GTP N9 C8 sing Y N 267 GTP N9 C4 sing Y N 268 GTP C8 N7 doub Y N 269 GTP C8 H8 sing N N 270 GTP N7 C5 sing Y N 271 GTP C5 C6 sing N N 272 GTP C5 C4 doub Y N 273 GTP C6 O6 doub N N 274 GTP C6 N1 sing N N 275 GTP N1 C2 sing N N 276 GTP N1 HN1 sing N N 277 GTP C2 N2 sing N N 278 GTP C2 N3 doub N N 279 GTP N2 HN21 sing N N 280 GTP N2 HN22 sing N N 281 GTP N3 C4 sing N N 282 HOH O H1 sing N N 283 HOH O H2 sing N N 284 IRI IR N1 sing N N 285 IRI IR N2 sing N N 286 IRI IR N3 sing N N 287 IRI IR N4 sing N N 288 IRI IR N5 sing N N 289 IRI IR N6 sing N N 290 IRI N1 HN11 sing N N 291 IRI N1 HN12 sing N N 292 IRI N1 HN13 sing N N 293 IRI N2 HN21 sing N N 294 IRI N2 HN22 sing N N 295 IRI N2 HN23 sing N N 296 IRI N3 HN31 sing N N 297 IRI N3 HN32 sing N N 298 IRI N3 HN33 sing N N 299 IRI N4 HN41 sing N N 300 IRI N4 HN42 sing N N 301 IRI N4 HN43 sing N N 302 IRI N5 HN51 sing N N 303 IRI N5 HN52 sing N N 304 IRI N5 HN53 sing N N 305 IRI N6 HN61 sing N N 306 IRI N6 HN62 sing N N 307 IRI N6 HN63 sing N N 308 SO4 S O1 doub N N 309 SO4 S O2 doub N N 310 SO4 S O3 sing N N 311 SO4 S O4 sing N N 312 U OP3 P sing N N 313 U OP3 HOP3 sing N N 314 U P OP1 doub N N 315 U P OP2 sing N N 316 U P "O5'" sing N N 317 U OP2 HOP2 sing N N 318 U "O5'" "C5'" sing N N 319 U "C5'" "C4'" sing N N 320 U "C5'" "H5'" sing N N 321 U "C5'" "H5''" sing N N 322 U "C4'" "O4'" sing N N 323 U "C4'" "C3'" sing N N 324 U "C4'" "H4'" sing N N 325 U "O4'" "C1'" sing N N 326 U "C3'" "O3'" sing N N 327 U "C3'" "C2'" sing N N 328 U "C3'" "H3'" sing N N 329 U "O3'" "HO3'" sing N N 330 U "C2'" "O2'" sing N N 331 U "C2'" "C1'" sing N N 332 U "C2'" "H2'" sing N N 333 U "O2'" "HO2'" sing N N 334 U "C1'" N1 sing N N 335 U "C1'" "H1'" sing N N 336 U N1 C2 sing N N 337 U N1 C6 sing N N 338 U C2 O2 doub N N 339 U C2 N3 sing N N 340 U N3 C4 sing N N 341 U N3 H3 sing N N 342 U C4 O4 doub N N 343 U C4 C5 sing N N 344 U C5 C6 doub N N 345 U C5 H5 sing N N 346 U C6 H6 sing N N 347 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4QKA 'double helix' 4QKA 'a-form double helix' 4QKA 'hairpin loop' 4QKA tetraloop 4QKA 'mismatched base pair' 4QKA 'internal loop' 4QKA 'triple helix' 4QKA 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 4 1_555 A A 109 1_555 -0.160 -0.162 0.273 5.601 -7.714 -2.809 1 A_U4:A109_A A 4 ? A 109 ? 20 1 1 A G 5 1_555 A C 108 1_555 0.272 -0.161 0.048 -0.235 -11.099 -0.180 2 A_G5:C108_A A 5 ? A 108 ? 19 1 1 A C 6 1_555 A G 107 1_555 0.341 -0.140 -0.203 3.110 -5.492 2.271 3 A_C6:G107_A A 6 ? A 107 ? 19 1 1 A C 7 1_555 A G 106 1_555 0.476 -0.138 -0.123 11.184 7.295 1.409 4 A_C7:G106_A A 7 ? A 106 ? 19 1 1 A G 8 1_555 A A 105 1_555 6.751 -4.051 0.357 32.095 5.827 -3.904 5 A_G8:A105_A A 8 ? A 105 ? 11 9 1 A A 17 1_555 A G 14 1_555 -6.622 -5.204 0.834 -26.697 8.555 -10.755 6 A_A17:G14_A A 17 ? A 14 ? ? ? 1 A G 18 1_555 A C 13 1_555 0.251 -0.191 -0.606 -6.342 9.055 -0.358 7 A_G18:C13_A A 18 ? A 13 ? 19 1 1 A G 19 1_555 A C 12 1_555 0.481 -0.081 -0.065 1.456 -2.058 -3.522 8 A_G19:C12_A A 19 ? A 12 ? 19 1 1 A U 20 1_555 A U 11 1_555 2.206 -1.861 -0.667 -0.419 -10.729 17.275 9 A_U20:U11_A A 20 ? A 11 ? 16 1 1 A A 21 1_555 A G 104 1_555 -6.931 -4.668 0.128 3.486 -11.940 -15.024 10 A_A21:G104_A A 21 ? A 104 ? 11 10 1 A C 22 1_555 A G 103 1_555 -0.368 -0.161 0.137 0.702 -6.345 -1.727 11 A_C22:G103_A A 22 ? A 103 ? 19 1 1 A G 23 1_555 A C 102 1_555 0.146 -0.126 -1.029 -16.043 -9.324 2.017 12 A_G23:C102_A A 23 ? A 102 ? 19 1 1 A G 24 1_555 A C 101 1_555 0.317 -0.040 -0.156 -7.298 8.296 -0.855 13 A_G24:C101_A A 24 ? A 101 ? 19 1 1 A A 25 1_555 A U 100 1_555 -0.110 -0.151 -0.086 4.278 7.203 -0.914 14 A_A25:U100_A A 25 ? A 100 ? 20 1 1 A G 26 1_555 A C 99 1_555 -0.072 -0.232 -0.600 -8.421 -11.666 0.931 15 A_G26:C99_A A 26 ? A 99 ? 19 1 1 A G 27 1_555 A A 98 1_555 6.839 -4.073 -0.383 -7.572 -7.476 -5.767 16 A_G27:A98_A A 27 ? A 98 ? 11 10 1 A C 30 1_555 A C 95 1_555 -4.070 -1.776 0.352 -0.205 -8.964 5.397 17 A_C30:C95_A A 30 ? A 95 ? ? 1 1 A C 31 1_555 A G 94 1_555 -0.157 -0.073 -0.067 8.875 -9.005 2.536 18 A_C31:G94_A A 31 ? A 94 ? 19 1 1 A C 85 1_555 A U 44 1_555 -7.077 -4.513 0.528 -26.271 8.553 -5.913 19 A_C85:U44_A A 85 ? A 44 ? ? ? 1 A A 86 1_555 A U 43 1_555 -0.059 -0.059 -0.245 -10.520 11.862 -2.251 20 A_A86:U43_A A 86 ? A 43 ? 20 1 1 A C 87 1_555 A G 42 1_555 0.140 -0.304 -0.123 3.143 3.538 -2.547 21 A_C87:G42_A A 87 ? A 42 ? 19 1 1 A C 88 1_555 A G 41 1_555 -0.031 -0.185 -0.409 4.622 -5.027 2.711 22 A_C88:G41_A A 88 ? A 41 ? 19 1 1 A C 89 1_555 A G 40 1_555 -0.050 -0.225 -0.094 -1.699 4.062 -1.894 23 A_C89:G40_A A 89 ? A 40 ? 19 1 1 A C 92 1_555 A G 39 1_555 0.049 -0.203 -0.236 0.552 -0.834 -1.326 24 A_C92:G39_A A 92 ? A 39 ? 19 1 1 A U 37 1_555 A A 91 1_555 -0.489 -0.104 0.138 -7.829 -0.651 -2.309 25 A_U37:A91_A A 37 ? A 91 ? 20 1 1 A C 59 1_555 A G 53 1_555 0.160 -0.398 -0.177 3.694 -10.768 4.337 26 A_C59:G53_A A 59 ? A 53 ? 19 1 1 A U 60 1_555 A A 52 1_555 -0.822 0.019 0.044 -5.113 -8.478 0.628 27 A_U60:A52_A A 60 ? A 52 ? 20 1 1 A G 61 1_555 A C 51 1_555 -0.253 -0.199 -0.157 -3.418 9.064 5.630 28 A_G61:C51_A A 61 ? A 51 ? 19 1 1 A C 62 1_555 A G 50 1_555 -0.188 -0.186 -0.979 -0.119 -14.297 -20.593 29 A_C62:G50_A A 62 ? A 50 ? ? 1 1 A A 63 1_555 A U 49 1_555 0.826 -0.161 -0.062 -10.524 -11.302 -7.435 30 A_A63:U49_A A 63 ? A 49 ? 20 1 1 A G 64 1_555 A C 48 1_555 0.067 -0.193 -0.799 -13.287 -15.521 -0.003 31 A_G64:C48_A A 64 ? A 48 ? 19 1 1 A U 65 1_555 A U 47 1_555 2.502 -1.825 -0.481 9.254 -18.955 17.705 32 A_U65:U47_A A 65 ? A 47 ? 16 1 1 A A 66 1_555 A G 84 1_555 -6.915 -4.492 -0.258 -6.555 -2.491 -8.577 33 A_A66:G84_A A 66 ? A 84 ? 11 10 1 A G 67 1_555 A C 83 1_555 -0.280 -0.239 -0.158 -5.119 -4.997 2.774 34 A_G67:C83_A A 67 ? A 83 ? 19 1 1 A G 68 1_555 A C 82 1_555 0.289 0.024 -0.394 -7.680 -4.282 3.300 35 A_G68:C82_A A 68 ? A 82 ? 19 1 1 A G 69 1_555 A C 81 1_555 -0.194 -0.029 -0.049 2.274 5.697 1.559 36 A_G69:C81_A A 69 ? A 81 ? 19 1 1 A A 70 1_555 A U 80 1_555 0.319 -0.044 -0.503 2.592 -0.857 -0.888 37 A_A70:U80_A A 70 ? A 80 ? 20 1 1 A U 71 1_555 A G 79 1_555 2.158 -0.649 -0.871 16.416 -3.264 -0.951 38 A_U71:G79_A A 71 ? A 79 ? 28 1 1 A G 115 1_555 A U 78 1_555 -1.628 -0.713 -0.484 1.990 -12.688 -6.877 39 A_G115:U78_A A 115 ? A 78 ? 28 1 1 A G 116 1_555 A C 77 1_555 0.062 -0.167 -0.680 -12.017 -14.293 1.457 40 A_G116:C77_A A 116 ? A 77 ? 19 1 1 A A 117 1_555 A U 76 1_555 -0.155 -0.064 0.080 -9.656 -8.547 0.618 41 A_A117:U76_A A 117 ? A 76 ? 20 1 1 A A 118 1_555 A U 75 1_555 0.159 -0.162 0.840 7.773 -1.157 -2.603 42 A_A118:U75_A A 118 ? A 75 ? 20 1 1 A G 119 1_555 A C 74 1_555 -0.027 -0.274 0.642 6.429 -1.134 -2.357 43 A_G119:C74_A A 119 ? A 74 ? 19 1 1 A G 120 1_555 A C 73 1_555 -0.141 -0.138 -0.281 -9.836 -18.254 -0.015 44 A_G120:C73_A A 120 ? A 73 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 4 1_555 A A 109 1_555 A G 5 1_555 A C 108 1_555 0.445 -1.746 3.356 -0.761 4.079 37.196 -3.256 -0.793 3.144 6.371 1.189 37.419 1 AA_U4G5:C108A109_AA A 4 ? A 109 ? A 5 ? A 108 ? 1 A G 5 1_555 A C 108 1_555 A C 6 1_555 A G 107 1_555 -0.686 -2.385 3.109 -2.384 4.687 26.623 -6.147 0.923 2.707 10.053 5.115 27.128 2 AA_G5C6:G107C108_AA A 5 ? A 108 ? A 6 ? A 107 ? 1 A C 6 1_555 A G 107 1_555 A C 7 1_555 A G 106 1_555 -0.736 -2.118 3.270 -4.058 4.937 27.430 -5.464 0.602 2.928 10.235 8.413 28.151 3 AA_C6C7:G106G107_AA A 6 ? A 107 ? A 7 ? A 106 ? 1 A C 7 1_555 A G 106 1_555 A G 8 1_555 A A 105 1_555 -0.826 -0.820 2.975 -0.842 4.311 47.493 -1.325 0.961 2.907 5.339 1.043 47.684 4 AA_C7G8:A105G106_AA A 7 ? A 106 ? A 8 ? A 105 ? 1 A A 17 1_555 A G 14 1_555 A G 18 1_555 A C 13 1_555 1.013 -0.756 2.790 5.195 13.357 53.562 -1.476 -0.833 2.628 14.530 -5.651 55.309 5 AA_A17G18:C13G14_AA A 17 ? A 14 ? A 18 ? A 13 ? 1 A G 18 1_555 A C 13 1_555 A G 19 1_555 A C 12 1_555 0.111 -2.722 3.404 -6.482 1.125 25.196 -6.359 -2.058 3.154 2.524 14.546 26.027 6 AA_G18G19:C12C13_AA A 18 ? A 13 ? A 19 ? A 12 ? 1 A G 19 1_555 A C 12 1_555 A U 20 1_555 A U 11 1_555 0.572 -1.921 3.690 4.500 4.235 35.731 -3.745 -0.221 3.491 6.839 -7.268 36.244 7 AA_G19U20:U11C12_AA A 19 ? A 12 ? A 20 ? A 11 ? 1 A U 20 1_555 A U 11 1_555 A A 21 1_555 A G 104 1_555 0.287 0.235 3.170 -6.596 4.868 24.182 -0.810 -2.469 2.978 11.216 15.197 25.514 8 AA_U20A21:G104U11_AA A 20 ? A 11 ? A 21 ? A 104 ? 1 A A 21 1_555 A G 104 1_555 A C 22 1_555 A G 103 1_555 1.494 -1.099 3.417 -2.156 6.664 60.363 -1.415 -1.584 3.241 6.603 2.136 60.730 9 AA_A21C22:G103G104_AA A 21 ? A 104 ? A 22 ? A 103 ? 1 A C 22 1_555 A G 103 1_555 A G 23 1_555 A C 102 1_555 0.956 -2.565 3.897 10.630 9.122 30.710 -6.112 0.315 3.178 16.208 -18.888 33.683 10 AA_C22G23:C102G103_AA A 22 ? A 103 ? A 23 ? A 102 ? 1 A G 23 1_555 A C 102 1_555 A G 24 1_555 A C 101 1_555 -1.071 -2.094 3.061 -9.222 1.296 29.090 -4.230 0.250 3.151 2.501 17.794 30.513 11 AA_G23G24:C101C102_AA A 23 ? A 102 ? A 24 ? A 101 ? 1 A G 24 1_555 A C 101 1_555 A A 25 1_555 A U 100 1_555 0.046 -1.945 3.076 -0.274 -3.550 27.318 -3.236 -0.163 3.297 -7.476 0.577 27.544 12 AA_G24A25:U100C101_AA A 24 ? A 101 ? A 25 ? A 100 ? 1 A A 25 1_555 A U 100 1_555 A G 26 1_555 A C 99 1_555 0.473 -2.146 3.685 6.206 5.029 31.740 -4.761 0.331 3.345 9.017 -11.129 32.704 13 AA_A25G26:C99U100_AA A 25 ? A 100 ? A 26 ? A 99 ? 1 A G 26 1_555 A C 99 1_555 A G 27 1_555 A A 98 1_555 -0.906 -0.887 3.523 -0.152 6.320 60.418 -1.202 0.889 3.426 6.262 0.150 60.717 14 AA_G26G27:A98C99_AA A 26 ? A 99 ? A 27 ? A 98 ? 1 A C 30 1_555 A C 95 1_555 A C 31 1_555 A G 94 1_555 0.017 -0.740 3.181 0.857 4.038 46.316 -1.265 0.049 3.109 5.122 -1.087 46.489 15 AA_C30C31:G94C95_AA A 30 ? A 95 ? A 31 ? A 94 ? 1 A C 85 1_555 A U 44 1_555 A A 86 1_555 A U 43 1_555 0.573 -1.041 2.934 -0.318 9.774 51.704 -1.731 -0.665 2.706 11.094 0.361 52.558 16 AA_C85A86:U43U44_AA A 85 ? A 44 ? A 86 ? A 43 ? 1 A A 86 1_555 A U 43 1_555 A C 87 1_555 A G 42 1_555 0.119 -2.018 3.119 -0.088 1.313 27.829 -4.486 -0.267 3.022 2.727 0.183 27.859 17 AA_A86C87:G42U43_AA A 86 ? A 43 ? A 87 ? A 42 ? 1 A C 87 1_555 A G 42 1_555 A C 88 1_555 A G 41 1_555 0.929 -2.437 3.406 3.323 -2.494 24.898 -4.780 -1.062 3.719 -5.733 -7.640 25.237 18 AA_C87C88:G41G42_AA A 87 ? A 42 ? A 88 ? A 41 ? 1 A C 88 1_555 A G 41 1_555 A C 89 1_555 A G 40 1_555 -0.702 -2.446 3.649 -2.246 1.381 28.623 -5.270 0.856 3.573 2.786 4.531 28.741 19 AA_C88C89:G40G41_AA A 88 ? A 41 ? A 89 ? A 40 ? 1 A C 89 1_555 A G 40 1_555 A C 92 1_555 A G 39 1_555 -2.721 -1.453 3.123 -0.228 1.263 52.228 -1.729 3.075 3.100 1.434 0.259 52.243 20 AA_C89C92:G39G40_AA A 89 ? A 40 ? A 92 ? A 39 ? 1 A C 92 1_555 A G 39 1_555 A U 37 1_555 A A 91 1_555 -2.506 -3.042 -2.841 -176.640 15.602 75.679 -1.461 1.942 0.017 7.846 88.835 177.890 21 AA_C92U37:A91G39_AA A 92 ? A 39 ? A 37 ? A 91 ? 1 A C 59 1_555 A G 53 1_555 A U 60 1_555 A A 52 1_555 -0.083 -2.111 3.347 0.507 7.736 26.575 -6.166 0.288 2.636 16.390 -1.075 27.663 22 AA_C59U60:A52G53_AA A 59 ? A 53 ? A 60 ? A 52 ? 1 A U 60 1_555 A A 52 1_555 A G 61 1_555 A C 51 1_555 0.134 -1.706 2.956 -2.897 12.129 30.806 -4.634 -0.628 2.130 21.747 5.195 33.177 23 AA_U60G61:C51A52_AA A 60 ? A 52 ? A 61 ? A 51 ? 1 A G 61 1_555 A C 51 1_555 A C 62 1_555 A G 50 1_555 -0.815 -2.267 3.128 4.727 12.439 33.366 -5.149 1.881 2.049 20.672 -7.855 35.852 24 AA_G61C62:G50C51_AA A 61 ? A 51 ? A 62 ? A 50 ? 1 A C 62 1_555 A G 50 1_555 A A 63 1_555 A U 49 1_555 0.726 -1.120 3.683 -7.418 17.883 36.287 -3.628 -1.879 2.677 26.522 11.002 40.975 25 AA_C62A63:U49G50_AA A 62 ? A 50 ? A 63 ? A 49 ? 1 A A 63 1_555 A U 49 1_555 A G 64 1_555 A C 48 1_555 0.421 -2.476 3.631 5.041 3.762 17.835 -9.605 1.487 3.050 11.674 -15.643 18.903 26 AA_A63G64:C48U49_AA A 63 ? A 49 ? A 64 ? A 48 ? 1 A G 64 1_555 A C 48 1_555 A U 65 1_555 A U 47 1_555 0.813 -0.533 2.829 -2.374 2.668 44.432 -0.912 -1.258 2.750 3.522 3.133 44.568 27 AA_G64U65:U47C48_AA A 64 ? A 48 ? A 65 ? A 47 ? 1 A U 65 1_555 A U 47 1_555 A A 66 1_555 A G 84 1_555 0.618 -0.012 3.782 -11.381 3.067 24.099 -0.914 -4.626 3.148 6.846 25.405 26.788 28 AA_U65A66:G84U47_AA A 65 ? A 47 ? A 66 ? A 84 ? 1 A A 66 1_555 A G 84 1_555 A G 67 1_555 A C 83 1_555 0.981 -0.853 3.408 -2.009 3.635 58.043 -1.075 -1.118 3.321 3.741 2.067 58.179 29 AA_A66G67:C83G84_AA A 66 ? A 84 ? A 67 ? A 83 ? 1 A G 67 1_555 A C 83 1_555 A G 68 1_555 A C 82 1_555 0.408 -2.341 3.310 3.250 2.917 33.161 -4.544 -0.180 3.123 5.083 -5.664 33.439 30 AA_G67G68:C82C83_AA A 67 ? A 83 ? A 68 ? A 82 ? 1 A G 68 1_555 A C 82 1_555 A G 69 1_555 A C 81 1_555 -1.064 -2.434 2.918 -5.968 3.202 22.369 -6.976 0.829 2.735 8.020 14.950 23.359 31 AA_G68G69:C81C82_AA A 68 ? A 82 ? A 69 ? A 81 ? 1 A G 69 1_555 A C 81 1_555 A A 70 1_555 A U 80 1_555 -0.538 -1.866 3.288 0.359 6.419 34.993 -3.949 0.931 2.906 10.565 -0.592 35.560 32 AA_G69A70:U80C81_AA A 69 ? A 81 ? A 70 ? A 80 ? 1 A A 70 1_555 A U 80 1_555 A U 71 1_555 A G 79 1_555 0.049 -1.622 3.003 2.604 2.883 33.935 -3.172 0.286 2.856 4.919 -4.443 34.150 33 AA_A70U71:G79U80_AA A 70 ? A 80 ? A 71 ? A 79 ? 1 A U 71 1_555 A G 79 1_555 A G 115 1_555 A U 78 1_555 -3.071 -0.756 3.612 -8.549 10.990 38.574 -2.496 3.292 3.835 16.014 12.457 40.919 34 AA_U71G115:U78G79_AA A 71 ? A 79 ? A 115 ? A 78 ? 1 A G 115 1_555 A U 78 1_555 A G 116 1_555 A C 77 1_555 0.099 -1.359 3.672 -0.416 10.849 39.352 -3.234 -0.192 3.202 15.750 0.603 40.765 35 AA_G115G116:C77U78_AA A 115 ? A 78 ? A 116 ? A 77 ? 1 A G 116 1_555 A C 77 1_555 A A 117 1_555 A U 76 1_555 -0.293 -1.438 3.047 -7.125 7.539 31.785 -3.619 -0.545 2.648 13.329 12.597 33.394 36 AA_G116A117:U76C77_AA A 116 ? A 77 ? A 117 ? A 76 ? 1 A A 117 1_555 A U 76 1_555 A A 118 1_555 A U 75 1_555 -0.388 -1.625 2.730 -2.940 1.206 34.226 -2.907 0.274 2.696 2.044 4.982 34.369 37 AA_A117A118:U75U76_AA A 117 ? A 76 ? A 118 ? A 75 ? 1 A A 118 1_555 A U 75 1_555 A G 119 1_555 A C 74 1_555 0.470 -1.537 3.264 2.582 10.142 31.215 -4.334 -0.418 2.676 18.217 -4.638 32.881 38 AA_A118G119:C74U75_AA A 118 ? A 75 ? A 119 ? A 74 ? 1 A G 119 1_555 A C 74 1_555 A G 120 1_555 A C 73 1_555 0.758 -2.306 3.556 7.635 10.176 30.579 -5.786 -0.030 2.774 18.330 -13.753 33.061 39 AA_G119G120:C73C74_AA A 119 ? A 74 ? A 120 ? A 73 ? # _atom_sites.entry_id 4QKA _atom_sites.fract_transf_matrix[1][1] 0.008618 _atom_sites.fract_transf_matrix[1][2] 0.004976 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009951 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008764 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C IR K MG N O P S # loop_