HEADER RNA 05-JUN-14 4QKA TITLE C-DI-AMP RIBOSWITCH FROM THERMOANAEROBACTER PSEUDETHANOLICUS, IRIDIUM TITLE 2 HEXAMINE SOAK COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-DI-AMP RIBOSWITCH; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: IN VITRO TRANSCRIPTION KEYWDS C-DI-AMP RIBOSWITCH, RNA EXPDTA X-RAY DIFFRACTION AUTHOR A.GAO,A.SERGANOV REVDAT 4 28-FEB-24 4QKA 1 COMPND REMARK HETNAM LINK REVDAT 3 10-SEP-14 4QKA 1 JRNL REVDAT 2 27-AUG-14 4QKA 1 JRNL REVDAT 1 06-AUG-14 4QKA 0 JRNL AUTH A.GAO,A.SERGANOV JRNL TITL STRUCTURAL INSIGHTS INTO RECOGNITION OF C-DI-AMP BY THE YDAO JRNL TITL 2 RIBOSWITCH. JRNL REF NAT.CHEM.BIOL. V. 10 787 2014 JRNL REFN ISSN 1552-4450 JRNL PMID 25086507 JRNL DOI 10.1038/NCHEMBIO.1607 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.3_1479) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 28391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0099 - 8.5979 1.00 1287 142 0.1259 0.1759 REMARK 3 2 8.5979 - 6.8540 1.00 1268 150 0.1325 0.1639 REMARK 3 3 6.8540 - 5.9963 1.00 1285 150 0.1309 0.1442 REMARK 3 4 5.9963 - 5.4520 1.00 1272 140 0.1429 0.1599 REMARK 3 5 5.4520 - 5.0635 1.00 1285 144 0.1351 0.1584 REMARK 3 6 5.0635 - 4.7663 1.00 1276 150 0.1538 0.1706 REMARK 3 7 4.7663 - 4.5285 1.00 1274 148 0.1630 0.1527 REMARK 3 8 4.5285 - 4.3321 1.00 1287 144 0.1648 0.1803 REMARK 3 9 4.3321 - 4.1658 1.00 1285 134 0.1765 0.2115 REMARK 3 10 4.1658 - 4.0224 1.00 1278 148 0.1920 0.1874 REMARK 3 11 4.0224 - 3.8970 1.00 1285 138 0.1915 0.2187 REMARK 3 12 3.8970 - 3.7858 1.00 1262 144 0.2029 0.2219 REMARK 3 13 3.7858 - 3.6864 1.00 1293 148 0.2259 0.3084 REMARK 3 14 3.6864 - 3.5966 1.00 1268 144 0.2384 0.2300 REMARK 3 15 3.5966 - 3.5150 1.00 1267 140 0.2613 0.3059 REMARK 3 16 3.5150 - 3.4403 1.00 1292 141 0.2500 0.3291 REMARK 3 17 3.4403 - 3.3716 0.99 1300 134 0.2613 0.2699 REMARK 3 18 3.3716 - 3.3080 0.99 1230 146 0.2704 0.3154 REMARK 3 19 3.3080 - 3.2490 0.98 1280 137 0.2751 0.3382 REMARK 3 20 3.2490 - 3.1940 0.98 1254 141 0.3196 0.3838 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3019 REMARK 3 ANGLE : 1.049 4737 REMARK 3 CHIRALITY : 0.047 614 REMARK 3 PLANARITY : 0.005 124 REMARK 3 DIHEDRAL : 18.506 1478 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QKA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000086161. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.105 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28391 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M (NH4)2SO4, 0.1M HEPES, PH 7.3, REMARK 280 AND 0.2 M LI2SO4, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.03267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.06533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.06533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.03267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 G A 55 REMARK 465 A A 56 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GTP A 1 PG O1G O2G O3G REMARK 470 A A 57 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C A 92 C2 - N1 - C1' ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 27 OP2 REMARK 620 2 G A 94 OP1 74.7 REMARK 620 3 C A 95 OP2 167.9 98.2 REMARK 620 4 U A 96 O4 83.2 102.8 108.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2BA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2BA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IRI A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IRI A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IRI A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IRI A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IRI A 210 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QK9 RELATED DB: PDB REMARK 900 RELATED ID: 4QK8 RELATED DB: PDB DBREF 4QKA A 1 122 PDB 4QKA 4QKA 1 122 SEQRES 1 A 122 GTP G U U G C C G A A U C C SEQRES 2 A 122 G A A A G G U A C G G A G SEQRES 3 A 122 G A A C C G C U U U U U G SEQRES 4 A 122 G G G U U A A U C U G C A SEQRES 5 A 122 G U G A A G C U G C A G U SEQRES 6 A 122 A G G G A U A C C U U C U SEQRES 7 A 122 G U C C C G C A C C C G A SEQRES 8 A 122 C A G C U A A C U C C G G SEQRES 9 A 122 A G G C A A U A A A G G A SEQRES 10 A 122 A G G A 23G MODRES 4QKA GTP A 1 G GUANOSINE-5'-TRIPHOSPHATE MODRES 4QKA 23G A 122 G HET GTP A 1 28 HET 23G A 122 26 HET 2BA A 201 44 HET 2BA A 202 44 HET MG A 203 1 HET K A 204 1 HET SO4 A 205 5 HET IRI A 206 7 HET IRI A 207 7 HET IRI A 208 7 HET IRI A 209 7 HET IRI A 210 7 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM 23G GUANOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE HETNAM 2BA (2R,3R,3AS,5R,7AR,9R,10R,10AS,12R,14AR)-2,9-BIS(6- HETNAM 2 2BA AMINO-9H-PURIN-9-YL)OCTAHYDRO-2H,7H-DIFURO[3,2-D:3', HETNAM 3 2BA 2'-J][1,3,7,9,2,8 ]TETRAOXADIPHOSPHACYCLODODECINE-3,5, HETNAM 4 2BA 10,12-TETROL 5,12-DIOXIDE HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETNAM SO4 SULFATE ION HETNAM IRI IRIDIUM HEXAMMINE ION HETSYN 2BA BIS-(3',5')-CYCLIC-DIMERIC-ADENOSINE-MONOPHOSPHATE FORMUL 1 GTP C10 H16 N5 O14 P3 FORMUL 1 23G C10 H13 N5 O10 P2 FORMUL 2 2BA 2(C20 H24 N10 O12 P2) FORMUL 4 MG MG 2+ FORMUL 5 K K 1+ FORMUL 6 SO4 O4 S 2- FORMUL 7 IRI 5(H18 IR N6 3+) FORMUL 12 HOH *2(H2 O) LINK O3' GTP A 1 P G A 2 1555 1555 1.61 LINK O3' A A 121 P 23G A 122 1555 1555 1.60 LINK OP1 G A 2 K K A 204 1555 1555 3.27 LINK OP2 G A 27 MG MG A 203 1555 1555 2.48 LINK OP1 G A 94 MG MG A 203 1555 1555 2.70 LINK OP2 C A 95 MG MG A 203 1555 1555 2.24 LINK O4 U A 96 MG MG A 203 1555 1555 2.59 SITE 1 AC1 15 G A 5 C A 6 C A 7 G A 8 SITE 2 AC1 15 A A 45 G A 68 G A 69 A A 70 SITE 3 AC1 15 U A 71 A A 72 C A 82 C A 83 SITE 4 AC1 15 G A 107 C A 108 A A 109 SITE 1 AC2 14 A A 9 G A 23 G A 24 A A 25 SITE 2 AC2 14 G A 26 G A 41 G A 42 U A 43 SITE 3 AC2 14 U A 44 C A 88 C A 89 A A 93 SITE 4 AC2 14 C A 102 G A 103 SITE 1 AC3 4 G A 27 G A 94 C A 95 U A 96 SITE 1 AC4 2 GTP A 1 G A 2 SITE 1 AC5 3 A A 29 C A 95 U A 96 SITE 1 AC6 4 A A 118 G A 119 G A 120 A A 121 SITE 1 AC7 4 G A 19 U A 20 G A 104 A A 105 SITE 1 AC8 4 G A 42 U A 43 U A 44 U A 47 SITE 1 AC9 5 A A 25 G A 26 G A 27 C A 95 SITE 2 AC9 5 U A 96 SITE 1 BC1 5 A A 63 G A 64 U A 65 G A 84 SITE 2 BC1 5 C A 85 CRYST1 116.035 116.035 114.098 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008618 0.004976 0.000000 0.00000 SCALE2 0.000000 0.009951 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008764 0.00000 HETATM 1 O3B GTP A 1 -58.302 3.681 -27.025 1.00 99.19 O HETATM 2 PB GTP A 1 -57.764 3.331 -28.475 1.00110.78 P HETATM 3 O1B GTP A 1 -57.399 1.851 -28.525 1.00115.62 O HETATM 4 O2B GTP A 1 -56.552 4.179 -28.840 1.00105.61 O HETATM 5 O3A GTP A 1 -58.870 3.669 -29.557 1.00106.56 O HETATM 6 PA GTP A 1 -60.433 3.452 -29.406 1.00102.03 P HETATM 7 O1A GTP A 1 -60.772 2.147 -28.694 1.00 98.43 O HETATM 8 O2A GTP A 1 -60.991 3.511 -30.818 1.00106.28 O HETATM 9 O5' GTP A 1 -61.065 4.628 -28.575 1.00 90.37 O HETATM 10 C5' GTP A 1 -61.481 4.341 -27.270 1.00 89.08 C HETATM 11 C4' GTP A 1 -61.868 5.497 -26.617 1.00 83.49 C HETATM 12 O4' GTP A 1 -60.652 6.362 -26.412 1.00 87.81 O HETATM 13 C3' GTP A 1 -62.872 6.458 -27.455 1.00 77.27 C HETATM 14 O3' GTP A 1 -64.324 6.145 -27.254 1.00 76.40 O HETATM 15 C2' GTP A 1 -62.655 7.571 -26.991 1.00 75.42 C HETATM 16 O2' GTP A 1 -63.389 7.798 -25.719 1.00 71.19 O HETATM 17 C1' GTP A 1 -61.049 7.579 -26.649 1.00 80.48 C HETATM 18 N9 GTP A 1 -60.339 8.173 -27.684 1.00 80.07 N HETATM 19 C8 GTP A 1 -59.431 7.382 -28.298 1.00 88.99 C HETATM 20 N7 GTP A 1 -58.839 8.142 -29.266 1.00 84.49 N HETATM 21 C5 GTP A 1 -59.393 9.374 -29.215 1.00 75.45 C HETATM 22 C6 GTP A 1 -59.137 10.605 -30.034 1.00 73.04 C HETATM 23 O6 GTP A 1 -58.303 10.616 -30.934 1.00 78.98 O HETATM 24 N1 GTP A 1 -59.891 11.746 -29.741 1.00 70.87 N HETATM 25 C2 GTP A 1 -60.862 11.732 -28.696 1.00 69.53 C HETATM 26 N2 GTP A 1 -61.606 12.898 -28.411 1.00 67.36 N HETATM 27 N3 GTP A 1 -61.108 10.555 -27.924 1.00 68.10 N HETATM 28 C4 GTP A 1 -60.333 9.384 -28.228 1.00 73.15 C