HEADER IMMUNE SYSTEM 13-JUN-14 4QLR TITLE LLAMA NANOBODY N02 RAISED AGAINST EAEC T6SS TSSM COMPND MOL_ID: 1; COMPND 2 MOLECULE: LLAMA NANOBODY N02 VH DOMAIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_TAXID: 9844; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS NANOBODY, IMMUNOGLOBULIN DOMAIN, T6SS TSSM, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR V.S.NGUYEN,A.DESMYTER,T.T.H.LE,E.DURAND,C.KELLENBERGER,B.DOUZI, AUTHOR 2 S.SPINELLI,E.CASCALES,C.CAMBILLAU,A.ROUSSEL REVDAT 3 08-NOV-23 4QLR 1 REMARK REVDAT 2 22-NOV-17 4QLR 1 REMARK REVDAT 1 08-APR-15 4QLR 0 JRNL AUTH V.S.NGUYEN,L.LOGGER,S.SPINELLI,A.DESMYTER,T.T.LE, JRNL AUTH 2 C.KELLENBERGER,B.DOUZI,E.DURAND,A.ROUSSEL,E.CASCALES, JRNL AUTH 3 C.CAMBILLAU JRNL TITL INHIBITION OF TYPE VI SECRETION BY AN ANTI-TSSM LLAMA JRNL TITL 2 NANOBODY. JRNL REF PLOS ONE V. 10 22187 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 25811612 JRNL DOI 10.1371/JOURNAL.PONE.0122187 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 23496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1201 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.78 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.65 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2742 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2404 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2609 REMARK 3 BIN R VALUE (WORKING SET) : 0.2397 REMARK 3 BIN FREE R VALUE : 0.2543 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.85 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 133 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1930 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 211 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.78940 REMARK 3 B22 (A**2) : 7.39780 REMARK 3 B33 (A**2) : -1.60840 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.37740 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.221 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.135 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1985 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2695 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 635 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 39 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 305 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1985 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 237 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2402 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.70 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.39 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|1 - 9} REMARK 3 ORIGIN FOR THE GROUP (A): 4.9725 -5.9280 11.4917 REMARK 3 T TENSOR REMARK 3 T11: 0.0036 T22: -0.0165 REMARK 3 T33: 0.0187 T12: 0.0360 REMARK 3 T13: 0.0456 T23: 0.0344 REMARK 3 L TENSOR REMARK 3 L11: -0.3575 L22: 0.0133 REMARK 3 L33: 1.1808 L12: -0.1640 REMARK 3 L13: 0.1522 L23: 0.0543 REMARK 3 S TENSOR REMARK 3 S11: 0.0054 S12: -0.0036 S13: -0.0067 REMARK 3 S21: 0.0261 S22: -0.0052 S23: -0.0097 REMARK 3 S31: -0.0031 S32: -0.0054 S33: -0.0002 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|10 - 31} REMARK 3 ORIGIN FOR THE GROUP (A): 0.4213 2.3179 9.4366 REMARK 3 T TENSOR REMARK 3 T11: -0.0555 T22: -0.0022 REMARK 3 T33: 0.0095 T12: 0.0041 REMARK 3 T13: 0.0123 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: -0.8678 L22: 1.2806 REMARK 3 L33: 1.6291 L12: 0.5536 REMARK 3 L13: 0.9498 L23: -0.1813 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: -0.0080 S13: -0.0104 REMARK 3 S21: 0.0700 S22: 0.0154 S23: 0.0387 REMARK 3 S31: 0.0092 S32: 0.0450 S33: -0.0216 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|32 - 46} REMARK 3 ORIGIN FOR THE GROUP (A): 0.7031 -4.9083 -1.1578 REMARK 3 T TENSOR REMARK 3 T11: -0.0486 T22: -0.0294 REMARK 3 T33: 0.0672 T12: 0.0060 REMARK 3 T13: 0.0152 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.9787 L22: 0.4251 REMARK 3 L33: 0.1142 L12: -0.0150 REMARK 3 L13: -0.5211 L23: -0.2197 REMARK 3 S TENSOR REMARK 3 S11: 0.0086 S12: 0.0202 S13: -0.0466 REMARK 3 S21: -0.0091 S22: -0.0497 S23: 0.0312 REMARK 3 S31: -0.0004 S32: 0.0187 S33: 0.0411 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|47 - 70} REMARK 3 ORIGIN FOR THE GROUP (A): 4.5429 6.4546 -2.0656 REMARK 3 T TENSOR REMARK 3 T11: -0.0536 T22: 0.0048 REMARK 3 T33: 0.0429 T12: -0.0079 REMARK 3 T13: 0.0192 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.7830 L22: 0.4491 REMARK 3 L33: -0.1668 L12: -0.8569 REMARK 3 L13: -0.6861 L23: 0.5259 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: -0.0004 S13: 0.0120 REMARK 3 S21: -0.0690 S22: 0.0026 S23: -0.0462 REMARK 3 S31: -0.0034 S32: 0.0426 S33: 0.0047 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|71 - 83} REMARK 3 ORIGIN FOR THE GROUP (A): 5.4902 6.1070 10.4190 REMARK 3 T TENSOR REMARK 3 T11: -0.0309 T22: 0.0134 REMARK 3 T33: 0.0230 T12: 0.0289 REMARK 3 T13: 0.0307 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: -0.1591 L22: 0.9978 REMARK 3 L33: 0.2290 L12: 0.4099 REMARK 3 L13: 0.1711 L23: -0.4609 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: -0.0174 S13: 0.0119 REMARK 3 S21: 0.0432 S22: 0.0258 S23: 0.0053 REMARK 3 S31: -0.0036 S32: 0.0309 S33: -0.0204 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|84 - 95} REMARK 3 ORIGIN FOR THE GROUP (A): -8.2679 0.6612 -0.4102 REMARK 3 T TENSOR REMARK 3 T11: -0.0528 T22: -0.0418 REMARK 3 T33: 0.0816 T12: 0.0004 REMARK 3 T13: -0.0029 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.6065 L22: 0.4556 REMARK 3 L33: -0.1875 L12: -0.2409 REMARK 3 L13: -0.0125 L23: -0.1240 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: 0.0037 S13: -0.0140 REMARK 3 S21: -0.0241 S22: -0.0263 S23: 0.0205 REMARK 3 S31: 0.0016 S32: 0.0074 S33: 0.0362 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|96 - 101} REMARK 3 ORIGIN FOR THE GROUP (A): 14.4585 -4.2327 3.2439 REMARK 3 T TENSOR REMARK 3 T11: -0.0706 T22: 0.0369 REMARK 3 T33: 0.0539 T12: -0.0271 REMARK 3 T13: 0.0032 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 0.0254 L22: 0.4194 REMARK 3 L33: 0.2739 L12: 0.0938 REMARK 3 L13: 0.1528 L23: 0.1035 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: -0.0044 S13: 0.0056 REMARK 3 S21: 0.0144 S22: -0.0180 S23: 0.0019 REMARK 3 S31: -0.0049 S32: -0.0085 S33: 0.0227 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|102 - 113} REMARK 3 ORIGIN FOR THE GROUP (A): 11.7813 -4.7914 -2.1408 REMARK 3 T TENSOR REMARK 3 T11: -0.0765 T22: -0.0218 REMARK 3 T33: 0.0920 T12: -0.0060 REMARK 3 T13: 0.0214 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.5098 L22: 0.0000 REMARK 3 L33: -0.0901 L12: 0.6634 REMARK 3 L13: 0.0101 L23: -0.6113 REMARK 3 S TENSOR REMARK 3 S11: -0.0340 S12: -0.0065 S13: 0.0051 REMARK 3 S21: -0.0193 S22: 0.0184 S23: -0.0193 REMARK 3 S31: 0.0262 S32: 0.0074 S33: 0.0155 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {A|114 - 119} REMARK 3 ORIGIN FOR THE GROUP (A): -0.1849 -8.1693 6.3586 REMARK 3 T TENSOR REMARK 3 T11: -0.0364 T22: 0.0183 REMARK 3 T33: 0.0095 T12: -0.0029 REMARK 3 T13: 0.0302 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.0890 L22: 0.2429 REMARK 3 L33: -0.0349 L12: 0.0365 REMARK 3 L13: -0.0087 L23: -0.3099 REMARK 3 S TENSOR REMARK 3 S11: -0.0049 S12: -0.0010 S13: 0.0014 REMARK 3 S21: -0.0236 S22: -0.0036 S23: 0.0118 REMARK 3 S31: -0.0043 S32: 0.0139 S33: 0.0084 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: {A|120 - 130} REMARK 3 ORIGIN FOR THE GROUP (A): -24.2353 0.7270 -0.2024 REMARK 3 T TENSOR REMARK 3 T11: -0.1275 T22: 0.0096 REMARK 3 T33: 0.1182 T12: -0.0094 REMARK 3 T13: 0.0246 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 0.2963 L22: 1.0860 REMARK 3 L33: -0.1026 L12: 0.4757 REMARK 3 L13: -0.0164 L23: 0.2228 REMARK 3 S TENSOR REMARK 3 S11: 0.0029 S12: -0.0088 S13: 0.0024 REMARK 3 S21: -0.0065 S22: 0.0018 S23: -0.0233 REMARK 3 S31: -0.0070 S32: 0.0210 S33: -0.0047 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: {B|2 - 9} REMARK 3 ORIGIN FOR THE GROUP (A): -1.1215 -5.1725 19.7207 REMARK 3 T TENSOR REMARK 3 T11: 0.0025 T22: -0.0159 REMARK 3 T33: 0.0188 T12: -0.0377 REMARK 3 T13: 0.0522 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.2939 L22: 0.0003 REMARK 3 L33: -0.0333 L12: 0.0043 REMARK 3 L13: -0.2553 L23: 0.2355 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: -0.0020 S13: 0.0048 REMARK 3 S21: 0.0068 S22: 0.0042 S23: -0.0194 REMARK 3 S31: 0.0010 S32: -0.0007 S33: 0.0012 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: {B|10 - 26} REMARK 3 ORIGIN FOR THE GROUP (A): -9.0298 -12.8333 13.9141 REMARK 3 T TENSOR REMARK 3 T11: 0.0037 T22: -0.0327 REMARK 3 T33: 0.0073 T12: 0.0004 REMARK 3 T13: 0.0178 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.5851 L22: 0.9913 REMARK 3 L33: -0.1689 L12: -0.7016 REMARK 3 L13: -0.5008 L23: 0.6942 REMARK 3 S TENSOR REMARK 3 S11: 0.0174 S12: -0.0090 S13: -0.0034 REMARK 3 S21: -0.0535 S22: -0.0423 S23: -0.0150 REMARK 3 S31: -0.0347 S32: 0.0197 S33: 0.0249 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: {B|27 - 40} REMARK 3 ORIGIN FOR THE GROUP (A): -4.3390 -8.5086 27.2356 REMARK 3 T TENSOR REMARK 3 T11: -0.0508 T22: -0.0190 REMARK 3 T33: 0.0514 T12: -0.0013 REMARK 3 T13: 0.0268 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.0737 L22: 0.2307 REMARK 3 L33: 0.4085 L12: 0.7326 REMARK 3 L13: -0.1261 L23: 1.1047 REMARK 3 S TENSOR REMARK 3 S11: -0.0168 S12: -0.0119 S13: 0.0187 REMARK 3 S21: 0.0278 S22: 0.0107 S23: -0.0033 REMARK 3 S31: 0.0159 S32: 0.0467 S33: 0.0061 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: {B|41 - 48} REMARK 3 ORIGIN FOR THE GROUP (A): -18.2389 -3.7943 24.0558 REMARK 3 T TENSOR REMARK 3 T11: 0.0315 T22: -0.0124 REMARK 3 T33: -0.0154 T12: -0.0036 REMARK 3 T13: 0.0449 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: -0.2029 L22: 0.2929 REMARK 3 L33: 0.4089 L12: -0.6308 REMARK 3 L13: 0.0821 L23: 0.0945 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: 0.0004 S13: 0.0206 REMARK 3 S21: -0.0083 S22: -0.0061 S23: 0.0113 REMARK 3 S31: -0.0102 S32: -0.0130 S33: 0.0153 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: {B|49 - 64} REMARK 3 ORIGIN FOR THE GROUP (A): -10.2085 -16.4085 30.8198 REMARK 3 T TENSOR REMARK 3 T11: 0.0545 T22: -0.0146 REMARK 3 T33: -0.0353 T12: -0.0025 REMARK 3 T13: 0.0682 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: -0.2059 L22: 0.0959 REMARK 3 L33: 0.3459 L12: -0.0234 REMARK 3 L13: 0.2676 L23: 0.2986 REMARK 3 S TENSOR REMARK 3 S11: -0.0148 S12: -0.0124 S13: -0.0171 REMARK 3 S21: 0.0631 S22: 0.0045 S23: -0.0154 REMARK 3 S31: 0.0307 S32: -0.0158 S33: 0.0103 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: {B|65 - 83} REMARK 3 ORIGIN FOR THE GROUP (A): -5.2131 -16.9982 22.2885 REMARK 3 T TENSOR REMARK 3 T11: -0.0119 T22: -0.0178 REMARK 3 T33: 0.0266 T12: 0.0016 REMARK 3 T13: 0.0352 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: -0.1827 L22: 0.8950 REMARK 3 L33: 0.3394 L12: -0.2433 REMARK 3 L13: 0.2678 L23: 0.7052 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: -0.0033 S13: 0.0114 REMARK 3 S21: 0.0241 S22: 0.0153 S23: -0.0621 REMARK 3 S31: 0.0202 S32: 0.0142 S33: 0.0026 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: {B|84 - 97} REMARK 3 ORIGIN FOR THE GROUP (A): -15.8944 -10.1511 17.5284 REMARK 3 T TENSOR REMARK 3 T11: 0.0067 T22: -0.0334 REMARK 3 T33: 0.0309 T12: 0.0048 REMARK 3 T13: 0.0409 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: -0.3241 L22: 0.1460 REMARK 3 L33: 0.6163 L12: 0.5322 REMARK 3 L13: 0.2680 L23: 0.2761 REMARK 3 S TENSOR REMARK 3 S11: 0.0144 S12: -0.0009 S13: -0.0286 REMARK 3 S21: -0.0164 S22: -0.0233 S23: 0.0318 REMARK 3 S31: -0.0141 S32: 0.0317 S33: 0.0089 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: {B|98 - 104} REMARK 3 ORIGIN FOR THE GROUP (A): -4.0150 -7.7976 36.4195 REMARK 3 T TENSOR REMARK 3 T11: -0.0049 T22: -0.0099 REMARK 3 T33: 0.0121 T12: 0.0269 REMARK 3 T13: -0.0037 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.0666 L22: 0.0560 REMARK 3 L33: 0.0262 L12: -0.1052 REMARK 3 L13: -0.0010 L23: -0.0638 REMARK 3 S TENSOR REMARK 3 S11: 0.0029 S12: -0.0010 S13: 0.0056 REMARK 3 S21: 0.0072 S22: -0.0067 S23: 0.0016 REMARK 3 S31: -0.0094 S32: 0.0075 S33: 0.0038 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: {B|105 - 112} REMARK 3 ORIGIN FOR THE GROUP (A): -9.7364 -4.2706 33.5518 REMARK 3 T TENSOR REMARK 3 T11: 0.0597 T22: -0.0342 REMARK 3 T33: -0.0171 T12: -0.0277 REMARK 3 T13: 0.0461 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: -0.0281 L22: 0.0000 REMARK 3 L33: 0.3634 L12: 0.2387 REMARK 3 L13: 0.0625 L23: -0.0389 REMARK 3 S TENSOR REMARK 3 S11: 0.0154 S12: -0.0042 S13: -0.0139 REMARK 3 S21: 0.0072 S22: 0.0071 S23: 0.0030 REMARK 3 S31: -0.0019 S32: 0.0066 S33: -0.0225 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: {B|113 - 123} REMARK 3 ORIGIN FOR THE GROUP (A): -9.6288 -4.0087 18.1983 REMARK 3 T TENSOR REMARK 3 T11: -0.0116 T22: 0.0025 REMARK 3 T33: 0.0003 T12: -0.0006 REMARK 3 T13: 0.0196 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: -0.0353 L22: 1.0090 REMARK 3 L33: 0.0417 L12: -0.1664 REMARK 3 L13: 0.0218 L23: -0.2130 REMARK 3 S TENSOR REMARK 3 S11: 0.0190 S12: -0.0227 S13: -0.0206 REMARK 3 S21: -0.0484 S22: 0.0048 S23: 0.0693 REMARK 3 S31: 0.0042 S32: 0.0314 S33: -0.0238 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QLR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086214. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.071 REMARK 200 MONOCHROMATOR : HIGH RESOLUTION SI(311) CUT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23498 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 2.640 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.52000 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4HEK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES 0.1M PH 6.5, PEG 8K 30% M/V, REMARK 280 AM2SO4 0.2M , VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.30150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 1 REMARK 465 SER B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 27 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 LYS B 100 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 48 -56.18 -120.60 REMARK 500 VAL B 48 -56.59 -121.25 REMARK 500 SER B 54 -81.36 -156.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QGY RELATED DB: PDB REMARK 900 ANOTHER ANTI-TSSM NANOBODY DBREF 4QLR A 1 130 PDB 4QLR 4QLR 1 130 DBREF 4QLR B 1 130 PDB 4QLR 4QLR 1 130 SEQRES 1 A 130 ASP VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL HIS SEQRES 2 A 130 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 130 ARG THR PHE SER ASP TYR ALA LEU GLY TRP PHE ARG GLN SEQRES 4 A 130 ALA PRO GLY LYS ASP ARG GLU PHE VAL ALA ALA ILE SER SEQRES 5 A 130 TRP SER GLY GLY SER THR TYR TYR ALA ASP SER VAL GLN SEQRES 6 A 130 GLY ARG PHE THR ILE SER ARG ASP ASN ASP LYS ASN SER SEQRES 7 A 130 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 A 130 ALA VAL TYR TYR CYS ALA ALA ASP LYS TYR TYR THR GLY SEQRES 9 A 130 PRO GLY GLY GLU SER VAL TYR ASP TYR TRP GLY ARG GLY SEQRES 10 A 130 THR GLN VAL THR VAL SER SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 130 ASP VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL HIS SEQRES 2 B 130 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 130 ARG THR PHE SER ASP TYR ALA LEU GLY TRP PHE ARG GLN SEQRES 4 B 130 ALA PRO GLY LYS ASP ARG GLU PHE VAL ALA ALA ILE SER SEQRES 5 B 130 TRP SER GLY GLY SER THR TYR TYR ALA ASP SER VAL GLN SEQRES 6 B 130 GLY ARG PHE THR ILE SER ARG ASP ASN ASP LYS ASN SER SEQRES 7 B 130 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 B 130 ALA VAL TYR TYR CYS ALA ALA ASP LYS TYR TYR THR GLY SEQRES 9 B 130 PRO GLY GLY GLU SER VAL TYR ASP TYR TRP GLY ARG GLY SEQRES 10 B 130 THR GLN VAL THR VAL SER SER HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *211(H2 O) HELIX 1 1 THR A 28 TYR A 32 5 5 HELIX 2 2 ASN A 74 LYS A 76 5 3 HELIX 3 3 LYS A 87 THR A 91 5 5 HELIX 4 4 GLY A 107 TYR A 111 5 5 HELIX 5 5 THR B 28 TYR B 32 5 5 HELIX 6 6 ASN B 74 LYS B 76 5 3 HELIX 7 7 LYS B 87 THR B 91 5 5 HELIX 8 8 GLY B 107 TYR B 111 5 5 SHEET 1 A 4 LEU A 4 SER A 7 0 SHEET 2 A 4 LEU A 18 ALA A 24 -1 O ALA A 23 N VAL A 5 SHEET 3 A 4 SER A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 A 4 PHE A 68 ASP A 73 -1 N THR A 69 O GLN A 82 SHEET 1 B 6 LEU A 11 VAL A 12 0 SHEET 2 B 6 THR A 118 VAL A 122 1 O THR A 121 N VAL A 12 SHEET 3 B 6 ALA A 92 ASP A 99 -1 N TYR A 94 O THR A 118 SHEET 4 B 6 ALA A 33 GLN A 39 -1 N ALA A 33 O ASP A 99 SHEET 5 B 6 ARG A 45 ILE A 51 -1 O ILE A 51 N LEU A 34 SHEET 6 B 6 THR A 58 TYR A 60 -1 O TYR A 59 N ALA A 50 SHEET 1 C 4 LEU A 11 VAL A 12 0 SHEET 2 C 4 THR A 118 VAL A 122 1 O THR A 121 N VAL A 12 SHEET 3 C 4 ALA A 92 ASP A 99 -1 N TYR A 94 O THR A 118 SHEET 4 C 4 TYR A 113 TRP A 114 -1 O TYR A 113 N ALA A 98 SHEET 1 D 4 LEU B 4 SER B 7 0 SHEET 2 D 4 LEU B 18 ALA B 24 -1 O ALA B 23 N VAL B 5 SHEET 3 D 4 SER B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 D 4 PHE B 68 ASP B 73 -1 N THR B 69 O GLN B 82 SHEET 1 E 6 LEU B 11 VAL B 12 0 SHEET 2 E 6 THR B 118 VAL B 122 1 O THR B 121 N VAL B 12 SHEET 3 E 6 ALA B 92 ASP B 99 -1 N TYR B 94 O THR B 118 SHEET 4 E 6 ALA B 33 GLN B 39 -1 N PHE B 37 O TYR B 95 SHEET 5 E 6 ARG B 45 ILE B 51 -1 O ALA B 49 N TRP B 36 SHEET 6 E 6 THR B 58 TYR B 60 -1 O TYR B 59 N ALA B 50 SHEET 1 F 4 LEU B 11 VAL B 12 0 SHEET 2 F 4 THR B 118 VAL B 122 1 O THR B 121 N VAL B 12 SHEET 3 F 4 ALA B 92 ASP B 99 -1 N TYR B 94 O THR B 118 SHEET 4 F 4 TYR B 113 TRP B 114 -1 O TYR B 113 N ALA B 98 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.29 SSBOND 2 CYS B 22 CYS B 96 1555 1555 2.28 CISPEP 1 GLY B 55 GLY B 56 0 1.76 CRYST1 50.100 48.603 52.872 90.00 118.18 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019960 0.000000 0.010694 0.00000 SCALE2 0.000000 0.020575 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021457 0.00000