HEADER OXIDOREDUCTASE 15-JUN-14 4QMA TITLE CRYSTAL STRUCTURE OF A PUTATIVE CYSTEINE DIOXYGNASE FROM RALSTONIA TITLE 2 EUTROPHA: AN ALTERNATIVE MODELING OF 2GM6 FROM JCSG TARGET 361076 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE DIOXYGENASE TYPE I; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA EUTROPHA JMP134; SOURCE 3 ORGANISM_TAXID: 264198; SOURCE 4 STRAIN: JMP 134 / LMG 1197; SOURCE 5 GENE: REUT_B5045, YP_299237.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PUTATIVE "GLN-TYPE" CYSTEINE DIOXYGENASE, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.H.HARTMAN,C.M.DRIGGERS,P.A.KARPLUS,JOINT CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (JCSG) REVDAT 7 30-OCT-24 4QMA 1 REMARK REVDAT 6 06-DEC-23 4QMA 1 REMARK REVDAT 5 20-SEP-23 4QMA 1 REMARK SEQADV LINK REVDAT 4 29-APR-15 4QMA 1 AUTHOR DBREF REMARK SEQRES REVDAT 3 14-JAN-15 4QMA 1 JRNL REVDAT 2 31-DEC-14 4QMA 1 JRNL REVDAT 1 26-NOV-14 4QMA 0 SPRSDE 26-NOV-14 4QMA 2GM6 JRNL AUTH C.M.DRIGGERS,S.J.HARTMAN,P.A.KARPLUS JRNL TITL STRUCTURES OF ARG- AND GLN-TYPE BACTERIAL CYSTEINE JRNL TITL 2 DIOXYGENASE HOMOLOGS. JRNL REF PROTEIN SCI. V. 24 154 2015 JRNL REFN ISSN 0961-8368 JRNL PMID 25307852 JRNL DOI 10.1002/PRO.2587 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.100 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2217 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7646 - 5.0670 1.00 2688 136 0.1658 0.1962 REMARK 3 2 5.0670 - 4.0226 1.00 2699 134 0.1224 0.1350 REMARK 3 3 4.0226 - 3.5144 1.00 2692 134 0.1486 0.1557 REMARK 3 4 3.5144 - 3.1931 1.00 2689 141 0.1596 0.2129 REMARK 3 5 3.1931 - 2.9643 1.00 2662 145 0.1725 0.1790 REMARK 3 6 2.9643 - 2.7896 1.00 2693 163 0.1761 0.2296 REMARK 3 7 2.7896 - 2.6499 1.00 2701 146 0.1620 0.2039 REMARK 3 8 2.6499 - 2.5345 1.00 2689 136 0.1539 0.1966 REMARK 3 9 2.5345 - 2.4370 1.00 2687 129 0.1580 0.1819 REMARK 3 10 2.4370 - 2.3529 1.00 2684 140 0.1658 0.1911 REMARK 3 11 2.3529 - 2.2793 1.00 2648 161 0.1645 0.2255 REMARK 3 12 2.2793 - 2.2142 1.00 2709 158 0.1706 0.1748 REMARK 3 13 2.2142 - 2.1559 1.00 2669 165 0.1790 0.2215 REMARK 3 14 2.1559 - 2.1033 1.00 2646 157 0.1979 0.2193 REMARK 3 15 2.1033 - 2.0555 1.00 2720 117 0.2198 0.2621 REMARK 3 16 2.0555 - 2.0117 1.00 2698 137 0.2159 0.2361 REMARK 3 17 2.0117 - 1.9715 1.00 2669 143 0.2286 0.2612 REMARK 3 18 1.9715 - 1.9343 1.00 2716 139 0.2380 0.2754 REMARK 3 19 1.9343 - 1.8997 1.00 2622 156 0.2450 0.2425 REMARK 3 20 1.8997 - 1.8675 1.00 2694 166 0.2755 0.3292 REMARK 3 21 1.8675 - 1.8374 1.00 2632 127 0.2887 0.3040 REMARK 3 22 1.8374 - 1.8091 1.00 2757 131 0.3144 0.2870 REMARK 3 23 1.8091 - 1.7825 1.00 2648 137 0.3138 0.2909 REMARK 3 24 1.7825 - 1.7574 1.00 2714 131 0.3249 0.3238 REMARK 3 25 1.7574 - 1.7337 1.00 2676 148 0.3285 0.3304 REMARK 3 26 1.7337 - 1.7112 1.00 2690 151 0.3396 0.4053 REMARK 3 27 1.7112 - 1.6898 1.00 2683 127 0.3628 0.3465 REMARK 3 28 1.6898 - 1.6694 1.00 2727 121 0.3602 0.3563 REMARK 3 29 1.6694 - 1.6500 1.00 2697 127 0.3627 0.4201 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1637 REMARK 3 ANGLE : 1.213 2213 REMARK 3 CHIRALITY : 0.052 227 REMARK 3 PLANARITY : 0.006 293 REMARK 3 DIHEDRAL : 13.641 602 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND RESID 11 THROUGH 202 REMARK 3 ORIGIN FOR THE GROUP (A): 36.5971 21.0005 37.2235 REMARK 3 T TENSOR REMARK 3 T11: 0.3632 T22: 0.2898 REMARK 3 T33: 0.2690 T12: 0.0757 REMARK 3 T13: -0.0615 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 0.9058 L22: 1.4719 REMARK 3 L33: 3.0550 L12: 0.4243 REMARK 3 L13: -0.4857 L23: -0.6380 REMARK 3 S TENSOR REMARK 3 S11: -0.1417 S12: 0.0201 S13: 0.1114 REMARK 3 S21: -0.1960 S22: 0.0637 S23: 0.1759 REMARK 3 S31: -0.2030 S32: -0.3025 S33: 0.0594 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. FE MODELED BASED ON ANOMALOUS DIFFERENCE MAP, REMARK 3 GEOMETRY, PROTEIN ENVIRONMENT, AND EXCITATION SCAN. 4. SO4 AND REMARK 3 EDO MODELED BASED ON CYRSTALLIZATION CONDITIONS. REMARK 4 REMARK 4 4QMA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000086233. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-06; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; SSRL REMARK 200 BEAMLINE : BL9-2; BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000; 0.97925, 0.91837, REMARK 200 0.97882 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR; REMARK 200 NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44377 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.00 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : 0.02500 REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.50 REMARK 200 R MERGE FOR SHELL (I) : 0.53350 REMARK 200 R SYM FOR SHELL (I) : 1.30200 REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: FOURIER SYNTHESIS BASED ON 2GM6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4M (NH4)2SO4, 0.1M TRIS, PH 8.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.34150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.50350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.50350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.17075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.50350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.50350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 162.51225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.50350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.50350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.17075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.50350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.50350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 162.51225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 108.34150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 525 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 ARG A 9 REMARK 465 ALA A 10 REMARK 465 ASP A 203 REMARK 465 SER A 204 REMARK 465 ALA A 205 REMARK 465 ALA A 206 REMARK 465 SER A 207 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 45 NE CZ NH1 NH2 REMARK 470 ARG A 49 CD NE CZ NH1 NH2 REMARK 470 LYS A 202 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 95 -168.07 -115.99 REMARK 500 HIS A 96 -41.79 -132.97 REMARK 500 THR A 97 -4.34 74.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 94 NE2 REMARK 620 2 HIS A 96 NE2 95.7 REMARK 620 3 HIS A 147 NE2 89.5 87.2 REMARK 620 4 OXY A 302 O1 84.7 89.2 172.9 REMARK 620 5 HOH A 501 O 169.3 90.9 99.3 86.9 REMARK 620 6 HOH A 502 O 90.9 172.5 96.3 87.9 82.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXY A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 313 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GM6 RELATED DB: PDB REMARK 900 MODEL WAS REFINED AGAINST DATA FROM THIS ENTRY REMARK 900 RELATED ID: 3USS RELATED DB: PDB REMARK 900 ANOTHER "GLN-TYPE" PUTATIVE CYSTEINE DIOXYGENASE REMARK 900 RELATED ID: 4QM9 RELATED DB: PDB REMARK 900 RELATED ID: 4QMA RELATED DB: PDB DBREF 4QMA A 1 207 UNP Q46R41 Q46R41_CUPPJ 1 207 SEQADV 4QMA GLY A 0 UNP Q46R41 EXPRESSION TAG SEQRES 1 A 208 GLY MSE SER GLU SER PRO THR ALA GLY ARG ALA SER LEU SEQRES 2 A 208 ALA PRO LEU ARG GLU PHE ILE THR GLY LEU SER ALA LEU SEQRES 3 A 208 LEU ASP GLU GLN PRO GLY GLU ALA ARG ILE LEU ARG GLU SEQRES 4 A 208 GLY GLY ALA LEU LEU ALA ARG LEU VAL ALA ARG ASP ASP SEQRES 5 A 208 TRP LEU PRO ASP ALA PHE ALA GLN PRO HIS PRO GLU TYR SEQRES 6 A 208 TYR GLN GLN MSE LEU LEU HIS CYS ASP SER ALA GLU ARG SEQRES 7 A 208 PHE SER ILE VAL SER PHE VAL TRP GLY PRO GLY GLN ARG SEQRES 8 A 208 THR PRO ILE HIS ASP HIS THR VAL TRP GLY LEU ILE GLY SEQRES 9 A 208 MSE LEU ARG GLY ALA GLU TYR SER GLN PRO PHE VAL LEU SEQRES 10 A 208 ASP GLY SER GLY ARG PRO VAL LEU HIS GLY GLU PRO THR SEQRES 11 A 208 ARG LEU GLU PRO GLY HIS VAL GLU ALA VAL SER PRO THR SEQRES 12 A 208 VAL GLY ASP ILE HIS ARG VAL HIS ASN ALA TYR ASP ASP SEQRES 13 A 208 ARG VAL SER ILE SER ILE HIS VAL TYR GLY ALA ASN ILE SEQRES 14 A 208 GLY GLY VAL ARG ARG SER VAL TYR THR GLU ALA GLY GLU SEQRES 15 A 208 ARG LYS PRO PHE ILE SER GLY TYR SER ASN PRO TYR LEU SEQRES 16 A 208 PRO ASN PRO TRP ASP ARG SER LYS ASP SER ALA ALA SER MODRES 4QMA MSE A 68 MET SELENOMETHIONINE MODRES 4QMA MSE A 104 MET SELENOMETHIONINE HET MSE A 68 8 HET MSE A 104 8 HET FE A 301 1 HET OXY A 302 2 HET SO4 A 303 5 HET SO4 A 304 5 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HET EDO A 310 4 HET EDO A 311 4 HET EDO A 312 4 HET EDO A 313 4 HETNAM MSE SELENOMETHIONINE HETNAM FE FE (III) ION HETNAM OXY OXYGEN MOLECULE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 FE FE 3+ FORMUL 3 OXY O2 FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 EDO 9(C2 H6 O2) FORMUL 15 HOH *209(H2 O) HELIX 1 1 LEU A 12 ASP A 27 1 16 HELIX 2 2 GLY A 31 ALA A 48 1 18 HELIX 3 3 PRO A 54 ALA A 58 5 5 HELIX 4 4 ASN A 167 VAL A 171 5 5 SHEET 1 A 5 GLN A 66 CYS A 72 0 SHEET 2 A 5 SER A 79 TRP A 85 -1 O ILE A 80 N LEU A 70 SHEET 3 A 5 SER A 158 TYR A 164 -1 O SER A 158 N TRP A 85 SHEET 4 A 5 GLY A 100 ARG A 106 -1 N GLY A 103 O ILE A 161 SHEET 5 A 5 VAL A 136 VAL A 139 -1 O GLU A 137 N ILE A 102 SHEET 1 B 3 PRO A 122 LEU A 124 0 SHEET 2 B 3 GLU A 109 LEU A 116 -1 N VAL A 115 O VAL A 123 SHEET 3 B 3 THR A 129 LEU A 131 -1 O LEU A 131 N GLU A 109 SHEET 1 C 3 PRO A 122 LEU A 124 0 SHEET 2 C 3 GLU A 109 LEU A 116 -1 N VAL A 115 O VAL A 123 SHEET 3 C 3 HIS A 147 ASN A 151 -1 O ARG A 148 N GLN A 112 SHEET 1 D 2 ARG A 173 TYR A 176 0 SHEET 2 D 2 ARG A 182 PHE A 185 -1 O PHE A 185 N ARG A 173 LINK C GLN A 67 N MSE A 68 1555 1555 1.32 LINK C MSE A 68 N LEU A 69 1555 1555 1.33 LINK C GLY A 103 N MSE A 104 1555 1555 1.33 LINK C MSE A 104 N LEU A 105 1555 1555 1.32 LINK NE2 HIS A 94 FE FE A 301 1555 1555 2.13 LINK NE2 HIS A 96 FE FE A 301 1555 1555 2.08 LINK NE2 HIS A 147 FE FE A 301 1555 1555 2.16 LINK FE FE A 301 O1 OXY A 302 1555 1555 2.34 LINK FE FE A 301 O HOH A 501 1555 1555 2.34 LINK FE FE A 301 O HOH A 502 1555 1555 2.11 SITE 1 AC1 6 HIS A 94 HIS A 96 HIS A 147 OXY A 302 SITE 2 AC1 6 HOH A 501 HOH A 502 SITE 1 AC2 7 PHE A 83 HIS A 94 HIS A 96 TYR A 164 SITE 2 AC2 7 ARG A 173 FE A 301 HOH A 502 SITE 1 AC3 7 ARG A 34 ARG A 37 ARG A 148 SO4 A 304 SITE 2 AC3 7 EDO A 310 HOH A 550 HOH A 657 SITE 1 AC4 6 PRO A 30 GLY A 31 ARG A 34 SO4 A 303 SITE 2 AC4 6 HOH A 550 HOH A 703 SITE 1 AC5 6 GLY A 31 GLU A 32 ALA A 33 EDO A 306 SITE 2 AC5 6 HOH A 508 HOH A 566 SITE 1 AC6 5 THR A 142 EDO A 305 HOH A 508 HOH A 528 SITE 2 AC6 5 HOH A 566 SITE 1 AC7 4 ASN A 191 PRO A 192 TYR A 193 HOH A 634 SITE 1 AC8 4 ARG A 77 TRP A 99 HOH A 529 HOH A 549 SITE 1 AC9 2 TYR A 176 GLU A 178 SITE 1 BC1 7 GLU A 32 ALA A 33 ARG A 90 SO4 A 303 SITE 2 BC1 7 HOH A 550 HOH A 566 HOH A 657 SITE 1 BC2 8 ALA A 44 ARG A 45 ALA A 48 SER A 119 SITE 2 BC2 8 GLY A 134 HOH A 556 HOH A 609 HOH A 648 SITE 1 BC3 3 ASP A 117 GLY A 118 HOH A 664 SITE 1 BC4 5 PRO A 54 ASP A 55 ALA A 56 HOH A 577 SITE 2 BC4 5 HOH A 583 CRYST1 57.007 57.007 216.683 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017542 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004615 0.00000