HEADER HYDROLASE, METAL BINDING PROTEIN 15-JUN-14 4QMB TITLE THE STRUCTURE OF INORGANIC PYROPHOSPHATASE FROM SCHISTOSOMA JAPONICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SJCHGC07024 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: INORGANIC PYROPHOSPHATASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA JAPONICUM; SOURCE 3 ORGANISM_COMMON: BLOOD FLUKE; SOURCE 4 ORGANISM_TAXID: 6182; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS PYROPHOSPHATASE, HYDROLASE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.F.WU REVDAT 3 08-NOV-23 4QMB 1 SEQADV REVDAT 2 24-JAN-18 4QMB 1 REMARK REVDAT 1 15-JUL-15 4QMB 0 JRNL AUTH Q.F.WU JRNL TITL THE STRUCTURE AND FUNCTION OF INORGANIC PYROPHOSPHATASE FROM JRNL TITL 2 SCHISTOSOMA JAPONICUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 24077 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.240 REMARK 3 FREE R VALUE TEST SET COUNT : 1984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.8790 - 6.2650 0.98 1538 145 0.2275 0.2336 REMARK 3 2 6.2650 - 4.9763 1.00 1588 141 0.2006 0.2699 REMARK 3 3 4.9763 - 4.3483 1.00 1583 146 0.1612 0.2280 REMARK 3 4 4.3483 - 3.9512 0.99 1599 133 0.1742 0.1876 REMARK 3 5 3.9512 - 3.6682 0.99 1558 141 0.1855 0.2869 REMARK 3 6 3.6682 - 3.4521 1.00 1556 131 0.1997 0.2641 REMARK 3 7 3.4521 - 3.2793 1.00 1590 151 0.2040 0.2660 REMARK 3 8 3.2793 - 3.1366 1.00 1589 144 0.2151 0.3015 REMARK 3 9 3.1366 - 3.0159 1.00 1591 135 0.2248 0.2706 REMARK 3 10 3.0159 - 2.9119 1.00 1566 147 0.2289 0.3387 REMARK 3 11 2.9119 - 2.8209 1.00 1605 136 0.2303 0.3164 REMARK 3 12 2.8209 - 2.7403 1.00 1610 150 0.2404 0.3623 REMARK 3 13 2.7403 - 2.6682 1.00 1559 138 0.2407 0.3500 REMARK 3 14 2.6682 - 2.6031 0.99 1561 146 0.2261 0.3509 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4629 REMARK 3 ANGLE : 1.467 6280 REMARK 3 CHIRALITY : 0.060 658 REMARK 3 PLANARITY : 0.009 810 REMARK 3 DIHEDRAL : 15.836 1701 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 16.5504 -14.3978 -12.9527 REMARK 3 T TENSOR REMARK 3 T11: 0.3289 T22: 0.3456 REMARK 3 T33: 0.3506 T12: 0.0638 REMARK 3 T13: 0.0167 T23: -0.0461 REMARK 3 L TENSOR REMARK 3 L11: 1.5783 L22: 2.5830 REMARK 3 L33: 2.0455 L12: 0.6069 REMARK 3 L13: 0.4158 L23: 1.1286 REMARK 3 S TENSOR REMARK 3 S11: 0.0514 S12: 0.0804 S13: -0.1331 REMARK 3 S21: -0.0703 S22: -0.1812 S23: 0.0777 REMARK 3 S31: 0.1256 S32: -0.0852 S33: 0.1045 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 16.5191 14.4277 14.7970 REMARK 3 T TENSOR REMARK 3 T11: 0.3326 T22: 0.3478 REMARK 3 T33: 0.3357 T12: -0.0533 REMARK 3 T13: -0.0171 T23: -0.0334 REMARK 3 L TENSOR REMARK 3 L11: 1.6639 L22: 2.5326 REMARK 3 L33: 2.0590 L12: -0.4909 REMARK 3 L13: -0.3939 L23: 1.1045 REMARK 3 S TENSOR REMARK 3 S11: 0.0303 S12: -0.0764 S13: 0.1280 REMARK 3 S21: 0.1130 S22: -0.1697 S23: 0.0930 REMARK 3 S31: -0.0602 S32: -0.0918 S33: 0.0959 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086234. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9707 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24093 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.603 REMARK 200 RESOLUTION RANGE LOW (A) : 37.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1E9G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 6.8, 2M NH4SO4, 0.04M REMARK 280 MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.97467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.98733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 285 REMARK 465 ASN A 286 REMARK 465 ILE A 287 REMARK 465 ASN B 284 REMARK 465 THR B 285 REMARK 465 ASN B 286 REMARK 465 ILE B 287 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 230 OG1 CG2 REMARK 470 ASN A 241 CG OD1 ND2 REMARK 470 MET A 250 CG SD CE REMARK 470 ASN B 241 CG OD1 ND2 REMARK 470 PHE B 256 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 274 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 247 N TYR B 249 1.27 REMARK 500 CG PRO A 248 N MET A 250 1.46 REMARK 500 OD1 ASP B 29 O THR B 243 1.61 REMARK 500 C SER B 247 N TYR B 249 1.71 REMARK 500 CD PRO A 248 N MET A 250 1.74 REMARK 500 O TYR A 249 C MET A 250 1.75 REMARK 500 O HOH B 301 O HOH B 330 1.94 REMARK 500 O TYR A 249 N VAL A 251 1.96 REMARK 500 CG PRO A 248 CA MET A 250 2.01 REMARK 500 O SER B 8 OG SER B 270 2.07 REMARK 500 O HOH B 312 O HOH B 326 2.07 REMARK 500 O HOH B 345 O HOH B 349 2.09 REMARK 500 O HOH A 331 O HOH A 332 2.11 REMARK 500 O HOH B 331 O HOH B 341 2.11 REMARK 500 O SER B 247 CD1 TYR B 249 2.13 REMARK 500 OD1 ASN A 284 O HOH A 333 2.13 REMARK 500 OD1 ASP A 150 O HOH A 304 2.14 REMARK 500 O SER A 8 OG SER A 270 2.14 REMARK 500 O SER B 247 CA TYR B 249 2.14 REMARK 500 O ILE A 257 O HOH A 324 2.15 REMARK 500 NZ LYS A 219 O HOH A 335 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 231 CD - CE - NZ ANGL. DEV. = -14.9 DEGREES REMARK 500 PRO A 248 C - N - CD ANGL. DEV. = -12.7 DEGREES REMARK 500 THR B 243 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 PRO B 248 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 LEU B 260 CA - CB - CG ANGL. DEV. = 19.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 35 87.67 -163.71 REMARK 500 ALA A 36 -178.67 56.52 REMARK 500 THR A 37 59.63 -95.24 REMARK 500 LYS A 59 -32.59 65.43 REMARK 500 MET A 63 -1.85 73.67 REMARK 500 LYS A 71 144.97 -174.67 REMARK 500 ASN A 73 63.23 21.48 REMARK 500 THR A 230 7.39 50.66 REMARK 500 ALA A 234 78.48 -68.08 REMARK 500 PRO A 236 -179.06 -36.97 REMARK 500 ILE A 237 -52.39 85.04 REMARK 500 LYS A 245 3.35 177.16 REMARK 500 SER A 247 79.19 60.75 REMARK 500 MET A 250 77.96 -5.66 REMARK 500 PHE A 256 -127.06 -41.38 REMARK 500 LYS A 262 69.41 -69.69 REMARK 500 ASP A 265 -13.01 41.69 REMARK 500 PHE A 266 139.30 61.48 REMARK 500 GLN A 275 -97.77 -178.04 REMARK 500 ALA A 276 50.79 -150.29 REMARK 500 ASP B 35 92.03 -162.03 REMARK 500 ALA B 36 -172.07 52.83 REMARK 500 THR B 37 71.85 -107.62 REMARK 500 MET B 63 -7.34 76.91 REMARK 500 ASN B 73 53.19 3.66 REMARK 500 GLU B 146 57.50 -18.73 REMARK 500 ILE B 228 -63.99 -92.31 REMARK 500 THR B 230 -96.02 -121.68 REMARK 500 LYS B 231 86.36 38.03 REMARK 500 ILE B 237 -9.16 40.55 REMARK 500 VAL B 244 130.47 87.53 REMARK 500 LYS B 245 80.45 49.74 REMARK 500 PRO B 248 20.78 -43.03 REMARK 500 TYR B 249 3.57 -43.17 REMARK 500 MET B 250 80.55 171.27 REMARK 500 PHE B 256 136.44 168.45 REMARK 500 ASP B 258 -93.90 -18.12 REMARK 500 ALA B 259 -13.34 42.63 REMARK 500 LEU B 260 -91.11 -78.11 REMARK 500 GLN B 261 56.93 -96.64 REMARK 500 LYS B 262 -19.99 -42.51 REMARK 500 GLU B 264 -90.62 -88.61 REMARK 500 THR B 273 121.30 70.60 REMARK 500 ASP B 274 -80.92 -133.71 REMARK 500 GLN B 275 -138.99 -84.79 REMARK 500 ALA B 276 56.90 -90.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 236 ILE A 237 -133.28 REMARK 500 VAL A 244 LYS A 245 -34.60 REMARK 500 VAL B 244 LYS B 245 -30.71 REMARK 500 TYR B 249 MET B 250 139.89 REMARK 500 MET B 250 VAL B 251 139.12 REMARK 500 GLN B 261 LYS B 262 130.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QLZ RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH COBALT AND PHOSPHATE DBREF 4QMB A 1 287 UNP Q5DE13 Q5DE13_SCHJA 1 287 DBREF 4QMB B 1 287 UNP Q5DE13 Q5DE13_SCHJA 1 287 SEQADV 4QMB ALA A 214 UNP Q5DE13 VAL 214 ENGINEERED MUTATION SEQADV 4QMB ALA B 214 UNP Q5DE13 VAL 214 ENGINEERED MUTATION SEQRES 1 A 287 MET SER VAL GLU ARG GLY THR SER ASN SER ALA SER TYR SEQRES 2 A 287 LYS MET PHE LEU THR HIS GLY GLY SER PRO ILE SER TYR SEQRES 3 A 287 PHE HIS ASP VAL PRO LEU PHE ALA ASP ALA THR ASN ASN SEQRES 4 A 287 CYS TYR ASN MET ILE VAL GLU ILE PRO ARG TRP THR ASN SEQRES 5 A 287 ALA LYS MET GLU ILE CYS LYS GLU GLU LEU MET ASN PRO SEQRES 6 A 287 ILE LYS HIS ASP VAL LYS ASN ASN LYS LEU ARG TYR ILE SEQRES 7 A 287 TYR ASN VAL PHE PRO HIS LYS GLY TYR ILE TRP ASN TYR SEQRES 8 A 287 GLY ALA LEU PRO GLN THR TRP GLU ASP PRO SER TYR VAL SEQRES 9 A 287 ASP GLU ASP THR LYS ALA LYS GLY ASP ASN ASP PRO ILE SEQRES 10 A 287 ASP VAL CYS GLU ILE GLY SER LYS ILE TRP PRO SER GLY SEQRES 11 A 287 SER VAL ILE PRO VAL LYS VAL LEU GLY ILE LEU GLY MET SEQRES 12 A 287 ILE ASP GLU GLY GLU THR ASP TRP LYS VAL ILE ALA ILE SEQRES 13 A 287 ASN VAL ALA ASP PRO MET ALA GLU LYS LEU ASN ASP ILE SEQRES 14 A 287 LEU ASP VAL ASP ALA HIS MET PRO GLY PHE LEU LYS ALA SEQRES 15 A 287 THR ARG ASP TRP PHE LYS TYR TYR LYS VAL PRO ALA GLY SEQRES 16 A 287 LYS PRO GLU ASN SER PHE ALA PHE ASN GLY GLU PHE LYS SEQRES 17 A 287 ASN LYS GLU PHE ALA ALA LYS ILE ILE SER LYS THR HIS SEQRES 18 A 287 GLU HIS TRP GLN LYS LEU ILE SER THR LYS VAL GLU ALA SEQRES 19 A 287 GLY PRO ILE ILE ARG ALA ASN VAL THR VAL LYS GLY SER SEQRES 20 A 287 PRO TYR MET VAL SER LYS GLU ASP PHE ILE ASP ALA LEU SEQRES 21 A 287 GLN LYS HIS GLU ASP PHE LYS ARG GLY SER GLU PRO THR SEQRES 22 A 287 ASP GLN ALA ILE GLU GLN TRP HIS PHE CYS ASN THR ASN SEQRES 23 A 287 ILE SEQRES 1 B 287 MET SER VAL GLU ARG GLY THR SER ASN SER ALA SER TYR SEQRES 2 B 287 LYS MET PHE LEU THR HIS GLY GLY SER PRO ILE SER TYR SEQRES 3 B 287 PHE HIS ASP VAL PRO LEU PHE ALA ASP ALA THR ASN ASN SEQRES 4 B 287 CYS TYR ASN MET ILE VAL GLU ILE PRO ARG TRP THR ASN SEQRES 5 B 287 ALA LYS MET GLU ILE CYS LYS GLU GLU LEU MET ASN PRO SEQRES 6 B 287 ILE LYS HIS ASP VAL LYS ASN ASN LYS LEU ARG TYR ILE SEQRES 7 B 287 TYR ASN VAL PHE PRO HIS LYS GLY TYR ILE TRP ASN TYR SEQRES 8 B 287 GLY ALA LEU PRO GLN THR TRP GLU ASP PRO SER TYR VAL SEQRES 9 B 287 ASP GLU ASP THR LYS ALA LYS GLY ASP ASN ASP PRO ILE SEQRES 10 B 287 ASP VAL CYS GLU ILE GLY SER LYS ILE TRP PRO SER GLY SEQRES 11 B 287 SER VAL ILE PRO VAL LYS VAL LEU GLY ILE LEU GLY MET SEQRES 12 B 287 ILE ASP GLU GLY GLU THR ASP TRP LYS VAL ILE ALA ILE SEQRES 13 B 287 ASN VAL ALA ASP PRO MET ALA GLU LYS LEU ASN ASP ILE SEQRES 14 B 287 LEU ASP VAL ASP ALA HIS MET PRO GLY PHE LEU LYS ALA SEQRES 15 B 287 THR ARG ASP TRP PHE LYS TYR TYR LYS VAL PRO ALA GLY SEQRES 16 B 287 LYS PRO GLU ASN SER PHE ALA PHE ASN GLY GLU PHE LYS SEQRES 17 B 287 ASN LYS GLU PHE ALA ALA LYS ILE ILE SER LYS THR HIS SEQRES 18 B 287 GLU HIS TRP GLN LYS LEU ILE SER THR LYS VAL GLU ALA SEQRES 19 B 287 GLY PRO ILE ILE ARG ALA ASN VAL THR VAL LYS GLY SER SEQRES 20 B 287 PRO TYR MET VAL SER LYS GLU ASP PHE ILE ASP ALA LEU SEQRES 21 B 287 GLN LYS HIS GLU ASP PHE LYS ARG GLY SER GLU PRO THR SEQRES 22 B 287 ASP GLN ALA ILE GLU GLN TRP HIS PHE CYS ASN THR ASN SEQRES 23 B 287 ILE FORMUL 3 HOH *88(H2 O) HELIX 1 1 ASP A 160 LYS A 165 5 6 HELIX 2 2 ASP A 168 MET A 176 1 9 HELIX 3 3 GLY A 178 TYR A 190 1 13 HELIX 4 4 PHE A 203 GLU A 206 5 4 HELIX 5 5 ASN A 209 SER A 229 1 21 HELIX 6 6 ASP A 258 LYS A 262 5 5 HELIX 7 7 ASP B 168 MET B 176 1 9 HELIX 8 8 GLY B 178 TYR B 190 1 13 HELIX 9 9 PHE B 203 GLU B 206 5 4 HELIX 10 10 ASN B 209 SER B 229 1 21 SHEET 1 A 3 SER A 2 ARG A 5 0 SHEET 2 A 3 LYS A 14 HIS A 19 -1 O PHE A 16 N VAL A 3 SHEET 3 A 3 SER A 22 ILE A 24 -1 O SER A 22 N HIS A 19 SHEET 1 B 7 LYS A 111 GLY A 112 0 SHEET 2 B 7 GLU A 148 ASN A 157 1 O THR A 149 N LYS A 111 SHEET 3 B 7 ASP A 118 GLU A 121 1 N CYS A 120 O VAL A 153 SHEET 4 B 7 ASN A 90 ALA A 93 -1 N ASN A 90 O GLU A 121 SHEET 5 B 7 TYR A 41 ILE A 47 -1 N ILE A 47 O TYR A 91 SHEET 6 B 7 VAL A 132 ASP A 145 -1 O VAL A 135 N TYR A 41 SHEET 7 B 7 SER A 200 PHE A 201 -1 O SER A 200 N ILE A 144 SHEET 1 C 4 LYS A 111 GLY A 112 0 SHEET 2 C 4 GLU A 148 ASN A 157 1 O THR A 149 N LYS A 111 SHEET 3 C 4 VAL A 132 ASP A 145 -1 N GLY A 139 O ILE A 154 SHEET 4 C 4 SER A 200 PHE A 201 -1 O SER A 200 N ILE A 144 SHEET 1 D 2 MET A 55 ILE A 57 0 SHEET 2 D 2 ILE A 66 HIS A 68 -1 O LYS A 67 N GLU A 56 SHEET 1 E 2 VAL A 70 LYS A 71 0 SHEET 2 E 2 LYS A 74 LEU A 75 -1 O LYS A 74 N LYS A 71 SHEET 1 F 2 ASN A 80 VAL A 81 0 SHEET 2 F 2 TRP A 280 HIS A 281 1 O HIS A 281 N ASN A 80 SHEET 1 G 3 SER B 2 ARG B 5 0 SHEET 2 G 3 LYS B 14 HIS B 19 -1 O PHE B 16 N VAL B 3 SHEET 3 G 3 SER B 22 ILE B 24 -1 O SER B 22 N HIS B 19 SHEET 1 H 7 LYS B 111 GLY B 112 0 SHEET 2 H 7 GLU B 148 ASN B 157 1 O THR B 149 N LYS B 111 SHEET 3 H 7 ASP B 118 GLU B 121 1 N CYS B 120 O VAL B 153 SHEET 4 H 7 ASN B 90 ALA B 93 -1 N ASN B 90 O GLU B 121 SHEET 5 H 7 TYR B 41 ILE B 47 -1 N ILE B 44 O ALA B 93 SHEET 6 H 7 VAL B 132 ASP B 145 -1 O VAL B 135 N TYR B 41 SHEET 7 H 7 SER B 200 PHE B 201 -1 O SER B 200 N ILE B 144 SHEET 1 I 4 LYS B 111 GLY B 112 0 SHEET 2 I 4 GLU B 148 ASN B 157 1 O THR B 149 N LYS B 111 SHEET 3 I 4 VAL B 132 ASP B 145 -1 N ASP B 145 O GLU B 148 SHEET 4 I 4 SER B 200 PHE B 201 -1 O SER B 200 N ILE B 144 SHEET 1 J 2 MET B 55 ILE B 57 0 SHEET 2 J 2 ILE B 66 HIS B 68 -1 O LYS B 67 N GLU B 56 SHEET 1 K 2 VAL B 70 LYS B 71 0 SHEET 2 K 2 LYS B 74 LEU B 75 -1 O LYS B 74 N LYS B 71 SHEET 1 L 2 ASN B 80 VAL B 81 0 SHEET 2 L 2 TRP B 280 HIS B 281 1 O HIS B 281 N ASN B 80 CISPEP 1 PHE A 82 PRO A 83 0 0.98 CISPEP 2 GLY A 246 SER A 247 0 -3.94 CISPEP 3 PRO A 248 TYR A 249 0 3.99 CISPEP 4 PHE B 82 PRO B 83 0 4.27 CISPEP 5 LYS B 245 GLY B 246 0 -2.39 CISPEP 6 PHE B 256 ILE B 257 0 -14.22 CRYST1 75.750 75.750 122.962 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013201 0.007622 0.000000 0.00000 SCALE2 0.000000 0.015244 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008133 0.00000