HEADER HYDROLASE 17-JUN-14 4QN3 TITLE CRYSTAL STRUCTURE OF NEURAMINIDASE N7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAMINIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 81-470; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS SOURCE 3 (A/MALLARD/ALB/196/1996(H10N7)); SOURCE 4 ORGANISM_TAXID: 352589; SOURCE 5 GENE: NA; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS 6-BLADED BETA-PROPELLER, HYDROLASE, CALCIUM BINDING, GLYCOSYLATION EXPDTA X-RAY DIFFRACTION AUTHOR X.SUN,Q.LI,Y.WU,Y.LIU,J.QI,C.J.VAVRICKA,G.F.GAO REVDAT 4 30-OCT-24 4QN3 1 REMARK REVDAT 3 24-AUG-22 4QN3 1 JRNL HETSYN REVDAT 2 29-JUL-20 4QN3 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 30-JUL-14 4QN3 0 JRNL AUTH X.SUN,Q.LI,Y.WU,M.WANG,Y.LIU,J.QI,C.J.VAVRICKA,G.F.GAO JRNL TITL STRUCTURE OF INFLUENZA VIRUS N7: THE LAST PIECE OF THE JRNL TITL 2 NEURAMINIDASE "JIGSAW" PUZZLE. JRNL REF J.VIROL. V. 88 9197 2014 JRNL REFN ESSN 1098-5514 JRNL PMID 24899180 JRNL DOI 10.1128/JVI.00805-14 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 44404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2248 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.5912 - 5.2640 0.97 2839 132 0.2246 0.1979 REMARK 3 2 5.2640 - 4.1808 0.99 2738 143 0.1480 0.2106 REMARK 3 3 4.1808 - 3.6530 1.00 2699 132 0.1503 0.1824 REMARK 3 4 3.6530 - 3.3193 0.99 2686 139 0.1528 0.1787 REMARK 3 5 3.3193 - 3.0816 1.00 2656 156 0.1641 0.2234 REMARK 3 6 3.0816 - 2.9000 1.00 2651 137 0.1731 0.1874 REMARK 3 7 2.9000 - 2.7548 1.00 2635 161 0.1755 0.2325 REMARK 3 8 2.7548 - 2.6350 1.00 2643 136 0.1745 0.2015 REMARK 3 9 2.6350 - 2.5336 1.00 2645 140 0.1731 0.2051 REMARK 3 10 2.5336 - 2.4462 1.00 2614 139 0.1795 0.2235 REMARK 3 11 2.4462 - 2.3697 0.99 2633 148 0.1852 0.2524 REMARK 3 12 2.3697 - 2.3020 1.00 2606 153 0.1873 0.2460 REMARK 3 13 2.3020 - 2.2414 0.99 2636 120 0.1830 0.2093 REMARK 3 14 2.2414 - 2.1867 0.99 2597 153 0.1891 0.2571 REMARK 3 15 2.1867 - 2.1370 0.98 2553 148 0.1960 0.2677 REMARK 3 16 2.1370 - 2.0916 0.87 2325 111 0.2102 0.2800 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6342 REMARK 3 ANGLE : 1.007 8606 REMARK 3 CHIRALITY : 0.067 964 REMARK 3 PLANARITY : 0.004 1100 REMARK 3 DIHEDRAL : 19.031 2296 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -14.0777 -15.8532 31.1462 REMARK 3 T TENSOR REMARK 3 T11: 0.1361 T22: 0.1398 REMARK 3 T33: 0.1349 T12: -0.0040 REMARK 3 T13: 0.0075 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.1061 L22: 0.0655 REMARK 3 L33: 0.0059 L12: -0.0939 REMARK 3 L13: 0.0652 L23: -0.0796 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: 0.0188 S13: -0.0071 REMARK 3 S21: 0.0134 S22: -0.0169 S23: 0.0027 REMARK 3 S31: 0.0022 S32: 0.0052 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QN3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086262. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44404 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.092 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CALCIUM ACETATE, 0.1M SODIUM REMARK 280 ACETATE, 10%(W/V) POLYETHYLENE GLYCOL 4000, PH 4.5, EVAPORATION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.26200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.26200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.26200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.26200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.26200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.26200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.26200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.26200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -110.52400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -55.26200 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 55.26200 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -55.26200 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -55.26200 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -110.52400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -55.26200 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -55.26200 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 55.26200 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -55.26200 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 611 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 620 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 693 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 793 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 828 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 NAG E 1 O HOH B 807 1.84 REMARK 500 O HOH A 696 O HOH A 791 1.86 REMARK 500 O HOH B 848 O HOH B 875 1.93 REMARK 500 O HOH B 726 O HOH B 744 1.94 REMARK 500 O HOH B 688 O HOH B 839 1.98 REMARK 500 O HOH A 783 O HOH A 785 1.98 REMARK 500 O4 NAG A 505 O HOH A 807 1.99 REMARK 500 NZ LYS A 250 O HOH A 836 2.00 REMARK 500 O HOH A 617 O HOH A 787 2.03 REMARK 500 ND2 ASN A 1 O HOH A 754 2.03 REMARK 500 N2 NAG B 505 O HOH B 817 2.03 REMARK 500 O HOH A 734 O HOH A 828 2.07 REMARK 500 O MET A 4 O HOH A 690 2.07 REMARK 500 O HOH B 663 O HOH B 813 2.08 REMARK 500 O HOH A 768 O HOH A 771 2.09 REMARK 500 O HOH A 666 O HOH A 677 2.11 REMARK 500 ND2 ASN A 119 C2 NAG A 505 2.12 REMARK 500 O HOH B 738 O HOH B 756 2.14 REMARK 500 O HOH B 673 O HOH B 784 2.14 REMARK 500 O HOH B 756 O HOH B 765 2.14 REMARK 500 O4 NAG D 2 O HOH A 792 2.16 REMARK 500 O HOH A 766 O HOH A 828 2.17 REMARK 500 OG1 THR B 155 O HOH B 849 2.17 REMARK 500 O HOH B 735 O HOH B 824 2.18 REMARK 500 ND2 ASN B 119 C2 NAG B 505 2.19 REMARK 500 O HOH B 773 O HOH B 810 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ARG A 246 NH2 ARG A 288 7555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 29 -40.97 -139.09 REMARK 500 ASN A 119 55.42 -155.18 REMARK 500 ILE A 141 72.16 53.58 REMARK 500 THR A 144 -154.68 -138.27 REMARK 500 HIS A 202 129.60 -172.77 REMARK 500 CYS A 210 -165.75 -119.17 REMARK 500 TRP A 214 -65.45 -95.14 REMARK 500 GLN A 234 -163.49 -163.07 REMARK 500 ASP A 275 60.00 -154.13 REMARK 500 SER A 276 -121.75 52.42 REMARK 500 ASN A 278 45.47 -87.42 REMARK 500 SER A 322 -136.96 -119.89 REMARK 500 SER B 29 -37.02 -142.09 REMARK 500 ASN B 119 51.84 -148.60 REMARK 500 THR B 144 -155.47 -142.21 REMARK 500 SER B 167 -153.85 -143.31 REMARK 500 HIS B 202 126.14 -170.72 REMARK 500 ASN B 203 60.22 39.81 REMARK 500 CYS B 210 -160.04 -121.58 REMARK 500 TRP B 214 -70.76 -100.67 REMARK 500 GLN B 234 -166.83 -168.03 REMARK 500 ASP B 275 55.64 -151.68 REMARK 500 SER B 276 -121.28 54.37 REMARK 500 ASN B 278 48.42 -88.13 REMARK 500 SER B 322 -136.63 -120.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 212 O REMARK 620 2 GLY A 216 O 93.6 REMARK 620 3 ASP A 243 OD2 87.9 89.9 REMARK 620 4 PRO A 266 O 94.4 161.8 106.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 212 O REMARK 620 2 GLY B 216 O 87.6 REMARK 620 3 ASP B 243 OD2 97.4 95.1 REMARK 620 4 PRO B 266 O 91.3 158.5 106.3 REMARK 620 5 HOH B 645 O 162.5 91.2 100.1 83.6 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QN4 RELATED DB: PDB REMARK 900 RELATED ID: 4QN5 RELATED DB: PDB REMARK 900 RELATED ID: 4QN6 RELATED DB: PDB REMARK 900 RELATED ID: 4QN7 RELATED DB: PDB DBREF 4QN3 A 1 390 UNP Q20R18 Q20R18_9INFA 81 470 DBREF 4QN3 B 1 390 UNP Q20R18 Q20R18_9INFA 81 470 SEQRES 1 A 390 ASN TYR LEU MET LEU ASN LYS SER LEU CYS LYS VAL GLU SEQRES 2 A 390 GLY TRP VAL VAL VAL ALA LYS ASP ASN ALA ILE ARG PHE SEQRES 3 A 390 GLY GLU SER GLU GLN ILE ILE VAL THR ARG GLU PRO TYR SEQRES 4 A 390 VAL SER CYS ASP PRO LEU GLY CYS LYS MET TYR ALA LEU SEQRES 5 A 390 HIS GLN GLY THR THR ILE ARG ASN LYS HIS SER ASN GLY SEQRES 6 A 390 THR ILE HIS ASP ARG THR ALA PHE ARG GLY LEU ILE SER SEQRES 7 A 390 THR PRO LEU GLY SER PRO PRO ILE VAL SER ASN SER ASP SEQRES 8 A 390 PHE LEU CYS VAL GLY TRP SER SER THR SER CYS HIS ASP SEQRES 9 A 390 GLY ILE GLY ARG MET THR ILE CYS VAL GLN GLY ASN ASN SEQRES 10 A 390 ASP ASN ALA THR ALA THR VAL TYR TYR ASP ARG ARG LEU SEQRES 11 A 390 THR THR THR ILE LYS THR TRP ALA GLY ASN ILE LEU ARG SEQRES 12 A 390 THR GLN GLU SER GLU CYS VAL CYS HIS ASN GLY THR CYS SEQRES 13 A 390 VAL VAL ILE MET THR ASP GLY SER ALA SER SER GLN ALA SEQRES 14 A 390 TYR THR LYS VAL LEU TYR PHE HIS LYS GLY LEU VAL ILE SEQRES 15 A 390 LYS GLU GLU ALA LEU LYS GLY SER ALA ARG HIS ILE GLU SEQRES 16 A 390 GLU CYS SER CYS TYR GLY HIS ASN SER LYS VAL THR CYS SEQRES 17 A 390 VAL CYS ARG ASP ASN TRP GLN GLY ALA ASN ARG PRO VAL SEQRES 18 A 390 ILE GLU ILE ASP MET ASN ALA MET GLU HIS THR SER GLN SEQRES 19 A 390 TYR LEU CYS THR GLY VAL LEU THR ASP THR SER ARG PRO SEQRES 20 A 390 SER ASP LYS SER ILE GLY ASP CYS ASN ASN PRO ILE THR SEQRES 21 A 390 GLY SER PRO GLY ALA PRO GLY VAL LYS GLY PHE GLY PHE SEQRES 22 A 390 LEU ASP SER GLY ASN THR TRP LEU GLY ARG THR ILE SER SEQRES 23 A 390 PRO ARG SER ARG SER GLY PHE GLU MET LEU LYS ILE PRO SEQRES 24 A 390 ASN ALA GLY THR ASP PRO ASN SER ARG ILE THR GLU ARG SEQRES 25 A 390 GLN GLU ILE VAL ASP ASN ASN ASN TRP SER GLY TYR SER SEQRES 26 A 390 GLY SER PHE ILE ASP TYR TRP ASP GLU SER SER GLU CYS SEQRES 27 A 390 TYR ASN PRO CYS PHE TYR VAL GLU LEU ILE ARG GLY ARG SEQRES 28 A 390 PRO GLU GLU ALA LYS TYR VAL TRP TRP THR SER ASN SER SEQRES 29 A 390 LEU VAL ALA LEU CYS GLY SER PRO VAL PRO VAL GLY SER SEQRES 30 A 390 GLY SER PHE PRO ASP GLY ALA GLN ILE GLN TYR PHE SER SEQRES 1 B 390 ASN TYR LEU MET LEU ASN LYS SER LEU CYS LYS VAL GLU SEQRES 2 B 390 GLY TRP VAL VAL VAL ALA LYS ASP ASN ALA ILE ARG PHE SEQRES 3 B 390 GLY GLU SER GLU GLN ILE ILE VAL THR ARG GLU PRO TYR SEQRES 4 B 390 VAL SER CYS ASP PRO LEU GLY CYS LYS MET TYR ALA LEU SEQRES 5 B 390 HIS GLN GLY THR THR ILE ARG ASN LYS HIS SER ASN GLY SEQRES 6 B 390 THR ILE HIS ASP ARG THR ALA PHE ARG GLY LEU ILE SER SEQRES 7 B 390 THR PRO LEU GLY SER PRO PRO ILE VAL SER ASN SER ASP SEQRES 8 B 390 PHE LEU CYS VAL GLY TRP SER SER THR SER CYS HIS ASP SEQRES 9 B 390 GLY ILE GLY ARG MET THR ILE CYS VAL GLN GLY ASN ASN SEQRES 10 B 390 ASP ASN ALA THR ALA THR VAL TYR TYR ASP ARG ARG LEU SEQRES 11 B 390 THR THR THR ILE LYS THR TRP ALA GLY ASN ILE LEU ARG SEQRES 12 B 390 THR GLN GLU SER GLU CYS VAL CYS HIS ASN GLY THR CYS SEQRES 13 B 390 VAL VAL ILE MET THR ASP GLY SER ALA SER SER GLN ALA SEQRES 14 B 390 TYR THR LYS VAL LEU TYR PHE HIS LYS GLY LEU VAL ILE SEQRES 15 B 390 LYS GLU GLU ALA LEU LYS GLY SER ALA ARG HIS ILE GLU SEQRES 16 B 390 GLU CYS SER CYS TYR GLY HIS ASN SER LYS VAL THR CYS SEQRES 17 B 390 VAL CYS ARG ASP ASN TRP GLN GLY ALA ASN ARG PRO VAL SEQRES 18 B 390 ILE GLU ILE ASP MET ASN ALA MET GLU HIS THR SER GLN SEQRES 19 B 390 TYR LEU CYS THR GLY VAL LEU THR ASP THR SER ARG PRO SEQRES 20 B 390 SER ASP LYS SER ILE GLY ASP CYS ASN ASN PRO ILE THR SEQRES 21 B 390 GLY SER PRO GLY ALA PRO GLY VAL LYS GLY PHE GLY PHE SEQRES 22 B 390 LEU ASP SER GLY ASN THR TRP LEU GLY ARG THR ILE SER SEQRES 23 B 390 PRO ARG SER ARG SER GLY PHE GLU MET LEU LYS ILE PRO SEQRES 24 B 390 ASN ALA GLY THR ASP PRO ASN SER ARG ILE THR GLU ARG SEQRES 25 B 390 GLN GLU ILE VAL ASP ASN ASN ASN TRP SER GLY TYR SER SEQRES 26 B 390 GLY SER PHE ILE ASP TYR TRP ASP GLU SER SER GLU CYS SEQRES 27 B 390 TYR ASN PRO CYS PHE TYR VAL GLU LEU ILE ARG GLY ARG SEQRES 28 B 390 PRO GLU GLU ALA LYS TYR VAL TRP TRP THR SER ASN SER SEQRES 29 B 390 LEU VAL ALA LEU CYS GLY SER PRO VAL PRO VAL GLY SER SEQRES 30 B 390 GLY SER PHE PRO ASP GLY ALA GLN ILE GLN TYR PHE SER MODRES 4QN3 ASN B 119 ASN GLYCOSYLATION SITE MODRES 4QN3 ASN B 64 ASN GLYCOSYLATION SITE MODRES 4QN3 ASN A 64 ASN GLYCOSYLATION SITE MODRES 4QN3 ASN A 119 ASN GLYCOSYLATION SITE MODRES 4QN3 ASN A 153 ASN GLYCOSYLATION SITE MODRES 4QN3 ASN B 153 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET NAG F 1 14 HET NAG F 2 14 HET CA A 501 1 HET NAG A 505 14 HET CA B 501 1 HET NAG B 505 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 10(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 7 CA 2(CA 2+) FORMUL 11 HOH *520(H2 O) HELIX 1 1 ASN A 22 GLY A 27 1 6 HELIX 2 2 ASN A 60 ASN A 64 5 5 HELIX 3 3 ASP A 275 ASN A 278 5 4 HELIX 4 4 GLN A 385 SER A 390 5 6 HELIX 5 5 ASN B 22 GLY B 27 1 6 HELIX 6 6 ASN B 60 ASN B 64 5 5 HELIX 7 7 ILE B 86 SER B 90 5 5 HELIX 8 8 GLN B 385 SER B 390 5 6 SHEET 1 A 4 GLY A 14 LYS A 20 0 SHEET 2 A 4 THR A 361 SER A 371 -1 O ALA A 367 N VAL A 18 SHEET 3 A 4 CYS A 342 GLY A 350 -1 N PHE A 343 O LEU A 368 SHEET 4 A 4 SER A 325 PHE A 328 -1 N PHE A 328 O CYS A 342 SHEET 1 B 4 ILE A 33 ASP A 43 0 SHEET 2 B 4 GLY A 46 THR A 57 -1 O TYR A 50 N TYR A 39 SHEET 3 B 4 GLY A 75 PRO A 80 -1 O THR A 79 N MET A 49 SHEET 4 B 4 ASP A 91 VAL A 95 -1 O ASP A 91 N SER A 78 SHEET 1 C 4 SER A 99 HIS A 103 0 SHEET 2 C 4 ARG A 108 ASN A 116 -1 O MET A 109 N CYS A 102 SHEET 3 C 4 ASN A 119 TYR A 126 -1 O THR A 123 N CYS A 112 SHEET 4 C 4 ARG A 129 LYS A 135 -1 O THR A 132 N VAL A 124 SHEET 1 D 4 VAL A 150 HIS A 152 0 SHEET 2 D 4 THR A 155 GLY A 163 -1 O THR A 155 N HIS A 152 SHEET 3 D 4 ALA A 169 HIS A 177 -1 O LEU A 174 N VAL A 158 SHEET 4 D 4 LEU A 180 ALA A 186 -1 O GLU A 185 N VAL A 173 SHEET 1 E 4 GLU A 195 HIS A 202 0 SHEET 2 E 4 LYS A 205 ARG A 211 -1 O VAL A 209 N SER A 198 SHEET 3 E 4 PRO A 220 ASP A 225 -1 O ILE A 222 N CYS A 208 SHEET 4 E 4 GLU A 230 TYR A 235 -1 O GLN A 234 N VAL A 221 SHEET 1 F 4 GLY A 272 PHE A 273 0 SHEET 2 F 4 TRP A 280 ARG A 283 -1 O TRP A 280 N PHE A 273 SHEET 3 F 4 SER A 291 LYS A 297 -1 O LEU A 296 N LEU A 281 SHEET 4 F 4 GLU A 311 TRP A 321 -1 O ILE A 315 N PHE A 293 SHEET 1 G 4 GLY B 14 LYS B 20 0 SHEET 2 G 4 THR B 361 SER B 371 -1 O ALA B 367 N ALA B 19 SHEET 3 G 4 PRO B 341 GLY B 350 -1 N ARG B 349 O SER B 362 SHEET 4 G 4 SER B 325 ILE B 329 -1 N PHE B 328 O CYS B 342 SHEET 1 H 4 ILE B 33 ASP B 43 0 SHEET 2 H 4 GLY B 46 THR B 57 -1 O TYR B 50 N TYR B 39 SHEET 3 H 4 GLY B 75 PRO B 80 -1 O THR B 79 N MET B 49 SHEET 4 H 4 ASP B 91 VAL B 95 -1 O ASP B 91 N SER B 78 SHEET 1 I 4 SER B 98 HIS B 103 0 SHEET 2 I 4 ARG B 108 ASN B 116 -1 O MET B 109 N CYS B 102 SHEET 3 I 4 ASN B 119 TYR B 126 -1 O THR B 123 N CYS B 112 SHEET 4 I 4 ARG B 129 LYS B 135 -1 O ILE B 134 N ALA B 122 SHEET 1 J 4 VAL B 150 HIS B 152 0 SHEET 2 J 4 THR B 155 GLY B 163 -1 O THR B 155 N HIS B 152 SHEET 3 J 4 ALA B 169 HIS B 177 -1 O LEU B 174 N VAL B 158 SHEET 4 J 4 LEU B 180 ALA B 186 -1 O GLU B 185 N VAL B 173 SHEET 1 K 4 GLU B 195 HIS B 202 0 SHEET 2 K 4 LYS B 205 ARG B 211 -1 O VAL B 209 N SER B 198 SHEET 3 K 4 PRO B 220 ASP B 225 -1 O ILE B 222 N CYS B 208 SHEET 4 K 4 GLU B 230 TYR B 235 -1 O GLN B 234 N VAL B 221 SHEET 1 L 4 GLY B 272 PHE B 273 0 SHEET 2 L 4 TRP B 280 ARG B 283 -1 O TRP B 280 N PHE B 273 SHEET 3 L 4 SER B 291 LYS B 297 -1 O LEU B 296 N LEU B 281 SHEET 4 L 4 GLU B 311 TRP B 321 -1 O ASN B 320 N GLY B 292 SSBOND 1 CYS A 10 CYS A 338 1555 1555 2.04 SSBOND 2 CYS A 42 CYS A 47 1555 1555 2.04 SSBOND 3 CYS A 94 CYS A 112 1555 1555 2.04 SSBOND 4 CYS A 102 CYS A 149 1555 1555 2.03 SSBOND 5 CYS A 151 CYS A 156 1555 1555 2.03 SSBOND 6 CYS A 197 CYS A 210 1555 1555 2.05 SSBOND 7 CYS A 199 CYS A 208 1555 1555 2.04 SSBOND 8 CYS A 237 CYS A 255 1555 1555 2.04 SSBOND 9 CYS A 342 CYS A 369 1555 1555 2.04 SSBOND 10 CYS B 10 CYS B 338 1555 1555 2.03 SSBOND 11 CYS B 42 CYS B 47 1555 1555 2.04 SSBOND 12 CYS B 94 CYS B 112 1555 1555 2.04 SSBOND 13 CYS B 102 CYS B 149 1555 1555 2.03 SSBOND 14 CYS B 151 CYS B 156 1555 1555 2.04 SSBOND 15 CYS B 197 CYS B 210 1555 1555 2.04 SSBOND 16 CYS B 199 CYS B 208 1555 1555 2.04 SSBOND 17 CYS B 237 CYS B 255 1555 1555 2.04 SSBOND 18 CYS B 342 CYS B 369 1555 1555 2.04 LINK ND2 ASN A 64 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 119 C1 NAG A 505 1555 1555 1.45 LINK ND2 ASN A 153 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN B 64 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN B 119 C1 NAG B 505 1555 1555 1.44 LINK ND2 ASN B 153 C1 NAG F 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O ASP A 212 CA CA A 501 1555 1555 2.23 LINK O GLY A 216 CA CA A 501 1555 1555 2.31 LINK OD2 ASP A 243 CA CA A 501 1555 1555 2.52 LINK O PRO A 266 CA CA A 501 1555 1555 2.38 LINK O ASP B 212 CA CA B 501 1555 1555 2.31 LINK O GLY B 216 CA CA B 501 1555 1555 2.47 LINK OD2 ASP B 243 CA CA B 501 1555 1555 2.47 LINK O PRO B 266 CA CA B 501 1555 1555 2.41 LINK CA CA B 501 O HOH B 645 1555 1555 2.15 CISPEP 1 THR A 244 SER A 245 0 2.04 CISPEP 2 ARG A 351 PRO A 352 0 3.11 CISPEP 3 THR B 244 SER B 245 0 8.64 CISPEP 4 ARG B 351 PRO B 352 0 3.67 CRYST1 110.524 110.524 121.418 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009048 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009048 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008236 0.00000