HEADER HYDROLASE/HYDROLASE INHIBITOR 19-JUN-14 4QO2 TITLE CRYSTAL STRUCTURE OF RHOMBOID INTRAMEMBRANE PROTEASE GLPG IN COMPLEX TITLE 2 WITH PEPTIDE DERIVED INHIBITOR AC-IATA-CMK COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHOMBOID PROTEASE GLPG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RHOMBOID PROTEASE GLPG; COMPND 5 SYNONYM: INTRAMEMBRANE SERINE PROTEASE; COMPND 6 EC: 3.4.21.105; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 6-AMINO-2-METHYL-1,7-DIHYDRO-8H-IMIDAZO[4,5-G]QUINAZOLIN-8- COMPND 10 ONE; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 1403831; SOURCE 4 STRAIN: C41; SOURCE 5 GENE: GLPG, BN896_3117; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES KEYWDS ALPHA-HELICAL, RHOMBOID INTRAMEMBRANE PROTEASE, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.ZOLL,K.STRISOVSKY REVDAT 5 06-NOV-24 4QO2 1 REMARK REVDAT 4 20-SEP-23 4QO2 1 REMARK HETSYN REVDAT 3 29-JUL-20 4QO2 1 CAVEAT COMPND REMARK SEQADV REVDAT 3 2 1 HETNAM LINK SITE REVDAT 2 29-OCT-14 4QO2 1 JRNL REMARK REVDAT 1 24-SEP-14 4QO2 0 JRNL AUTH S.ZOLL,S.STANCHEV,J.BEGAN,J.SKERLE,M.LEPSIK,L.PECLINOVSKA, JRNL AUTH 2 P.MAJER,K.STRISOVSKY JRNL TITL SUBSTRATE BINDING AND SPECIFICITY OF RHOMBOID INTRAMEMBRANE JRNL TITL 2 PROTEASE REVEALED BY SUBSTRATE-PEPTIDE COMPLEX STRUCTURES. JRNL REF EMBO J. V. 33 2408 2014 JRNL REFN ISSN 0261-4189 JRNL PMID 25216680 JRNL DOI 10.15252/EMBJ.201489367 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1066 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1500 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.1790 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.1780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1486 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 123 REMARK 3 SOLVENT ATOMS : 50 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.92000 REMARK 3 B12 (A**2) : -0.14000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.911 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1643 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1687 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2193 ; 1.019 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3854 ; 0.545 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 230 ; 0.310 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1707 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 395 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 730 ; 2.133 ; 1.885 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 728 ; 2.118 ; 1.874 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 911 ; 2.742 ; 2.804 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 911 ; 2.744 ; 2.806 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 913 ; 4.636 ; 2.799 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 914 ; 4.634 ; 2.804 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1282 ; 5.356 ; 3.853 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1546 ; 7.908 ;21.844 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1536 ; 7.832 ;21.721 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 90 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): -83.8136 52.0523 65.0084 REMARK 3 T TENSOR REMARK 3 T11: 0.1738 T22: 0.1734 REMARK 3 T33: 0.1638 T12: 0.0278 REMARK 3 T13: 0.0010 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 6.8971 L22: 13.3877 REMARK 3 L33: 4.5703 L12: -1.1426 REMARK 3 L13: 0.9661 L23: 0.4611 REMARK 3 S TENSOR REMARK 3 S11: -0.2198 S12: -0.4374 S13: 0.3527 REMARK 3 S21: 0.9247 S22: 0.0885 S23: 0.6934 REMARK 3 S31: -0.3748 S32: -0.2828 S33: 0.1313 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 120 REMARK 3 ORIGIN FOR THE GROUP (A): -77.3887 52.0521 44.7697 REMARK 3 T TENSOR REMARK 3 T11: 0.0652 T22: 0.1626 REMARK 3 T33: 0.1820 T12: 0.0421 REMARK 3 T13: 0.0447 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 1.7135 L22: 2.1491 REMARK 3 L33: 4.3844 L12: -0.7078 REMARK 3 L13: -0.6322 L23: 1.1729 REMARK 3 S TENSOR REMARK 3 S11: 0.0471 S12: 0.1953 S13: 0.0806 REMARK 3 S21: -0.1993 S22: -0.0699 S23: -0.2947 REMARK 3 S31: -0.1939 S32: 0.3397 S33: 0.0228 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 121 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): -80.2582 42.9035 47.0287 REMARK 3 T TENSOR REMARK 3 T11: 0.0486 T22: 0.0927 REMARK 3 T33: 0.1246 T12: 0.0508 REMARK 3 T13: 0.0040 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.0691 L22: 1.0405 REMARK 3 L33: 2.6804 L12: -0.4764 REMARK 3 L13: -0.5192 L23: 0.5771 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: 0.0384 S13: 0.0115 REMARK 3 S21: -0.0367 S22: 0.0400 S23: -0.0030 REMARK 3 S31: 0.1853 S32: 0.1447 S33: -0.0419 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 167 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): -82.7194 37.2434 57.9303 REMARK 3 T TENSOR REMARK 3 T11: 0.0493 T22: 0.0792 REMARK 3 T33: 0.1523 T12: 0.0471 REMARK 3 T13: 0.0031 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 1.8730 L22: 3.4787 REMARK 3 L33: 11.2530 L12: 0.1219 REMARK 3 L13: 0.3108 L23: 1.8736 REMARK 3 S TENSOR REMARK 3 S11: 0.0216 S12: -0.1004 S13: -0.2351 REMARK 3 S21: 0.1337 S22: -0.0541 S23: 0.0631 REMARK 3 S31: 0.3052 S32: -0.1208 S33: 0.0325 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 219 REMARK 3 ORIGIN FOR THE GROUP (A): -89.6162 36.0319 51.7758 REMARK 3 T TENSOR REMARK 3 T11: 0.1259 T22: 0.1167 REMARK 3 T33: 0.1996 T12: 0.0134 REMARK 3 T13: -0.0306 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 3.8668 L22: 1.4034 REMARK 3 L33: 5.0306 L12: 0.0058 REMARK 3 L13: -2.6458 L23: -0.5429 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: 0.1743 S13: -0.2957 REMARK 3 S21: 0.0057 S22: 0.0690 S23: 0.0920 REMARK 3 S31: 0.4479 S32: -0.2885 S33: -0.0746 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 220 A 226 REMARK 3 ORIGIN FOR THE GROUP (A): -97.0163 40.6870 67.1305 REMARK 3 T TENSOR REMARK 3 T11: 0.1173 T22: 0.1936 REMARK 3 T33: 0.0981 T12: -0.0298 REMARK 3 T13: 0.0561 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 15.0169 L22: 10.2123 REMARK 3 L33: 24.2440 L12: -4.2843 REMARK 3 L13: 11.9031 L23: -3.4343 REMARK 3 S TENSOR REMARK 3 S11: -0.1390 S12: -0.8120 S13: -0.3243 REMARK 3 S21: 0.8632 S22: 0.2466 S23: 0.3754 REMARK 3 S31: -0.2068 S32: -0.1637 S33: -0.1076 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 227 A 253 REMARK 3 ORIGIN FOR THE GROUP (A): -98.6228 42.1426 45.4749 REMARK 3 T TENSOR REMARK 3 T11: 0.2025 T22: 0.3320 REMARK 3 T33: 0.2824 T12: -0.0199 REMARK 3 T13: 0.0098 T23: -0.0386 REMARK 3 L TENSOR REMARK 3 L11: 1.9964 L22: 0.7114 REMARK 3 L33: 0.0960 L12: -1.1894 REMARK 3 L13: 0.4365 L23: -0.2597 REMARK 3 S TENSOR REMARK 3 S11: 0.1107 S12: 0.1972 S13: -0.0564 REMARK 3 S21: -0.0734 S22: -0.1117 S23: 0.0572 REMARK 3 S31: 0.0273 S32: 0.0520 S33: 0.0010 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 254 A 271 REMARK 3 ORIGIN FOR THE GROUP (A): -90.8529 30.7337 58.5099 REMARK 3 T TENSOR REMARK 3 T11: 0.1183 T22: 0.0440 REMARK 3 T33: 0.2046 T12: 0.0063 REMARK 3 T13: 0.0025 T23: 0.0575 REMARK 3 L TENSOR REMARK 3 L11: 3.0038 L22: 4.8959 REMARK 3 L33: 10.7382 L12: 0.0505 REMARK 3 L13: -1.1159 L23: -2.8360 REMARK 3 S TENSOR REMARK 3 S11: -0.0673 S12: -0.0827 S13: -0.6490 REMARK 3 S21: 0.0605 S22: 0.2302 S23: 0.0402 REMARK 3 S31: 0.6211 S32: -0.2279 S33: -0.1629 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4QO2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086297. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9201 REMARK 200 MONOCHROMATOR : SAGITALLY BENDED SI111 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21305 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2IC8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 3000, 0.1 M IMIDAZOLE PH 8.0, REMARK 280 0.2 M LITHIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.20000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.20000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.20000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE ACE-ILE-ALA-THR-ALA-0QE IS PEPTIDE-LIKE, A MEMBER OF INHIBITOR REMARK 400 CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: ACE-ILE-ALA-THR-ALA-0QE REMARK 400 CHAIN: B REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 87 REMARK 465 ALA A 88 REMARK 465 LEU A 89 REMARK 465 ALA A 272 REMARK 465 ARG A 273 REMARK 465 LYS A 274 REMARK 465 ARG A 275 REMARK 465 LYS A 276 REMARK 465 ALA A 277 REMARK 465 SER A 278 REMARK 465 LEU A 279 REMARK 465 GLU A 280 REMARK 465 ARG A 281 REMARK 465 GLU A 282 REMARK 465 ASN A 283 REMARK 465 LEU A 284 REMARK 465 TYR A 285 REMARK 465 PHE A 286 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 90 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA B 5 C ALA B 5 O 0.265 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 125 139.66 -39.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 246 MET A 247 -143.22 REMARK 500 LEU A 270 ASN A 271 116.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 BNG A 301 REMARK 610 BNG A 302 REMARK 610 BNG A 303 REMARK 610 BNG A 304 REMARK 610 BNG A 305 REMARK 610 BNG A 306 REMARK 610 BNG A 307 REMARK 610 BNG A 308 REMARK 610 BNG A 309 REMARK 610 BNG A 310 REMARK 610 BNG A 311 REMARK 610 BNG A 312 REMARK 610 BNG A 313 REMARK 610 BNG A 314 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QNZ RELATED DB: PDB REMARK 900 RELATED ID: 4QO0 RELATED DB: PDB DBREF 4QO2 A 87 276 UNP U6NA71 U6NA71_ECOLI 87 276 DBREF 4QO2 B 1 6 PDB 4QO2 4QO2 1 6 SEQADV 4QO2 ALA A 277 UNP U6NA71 EXPRESSION TAG SEQADV 4QO2 SER A 278 UNP U6NA71 EXPRESSION TAG SEQADV 4QO2 LEU A 279 UNP U6NA71 EXPRESSION TAG SEQADV 4QO2 GLU A 280 UNP U6NA71 EXPRESSION TAG SEQADV 4QO2 ARG A 281 UNP U6NA71 EXPRESSION TAG SEQADV 4QO2 GLU A 282 UNP U6NA71 EXPRESSION TAG SEQADV 4QO2 ASN A 283 UNP U6NA71 EXPRESSION TAG SEQADV 4QO2 LEU A 284 UNP U6NA71 EXPRESSION TAG SEQADV 4QO2 TYR A 285 UNP U6NA71 EXPRESSION TAG SEQADV 4QO2 PHE A 286 UNP U6NA71 EXPRESSION TAG SEQRES 1 A 200 ALA ALA LEU ARG GLU ARG ALA GLY PRO VAL THR TRP VAL SEQRES 2 A 200 MET MET ILE ALA CYS VAL VAL VAL PHE ILE ALA MET GLN SEQRES 3 A 200 ILE LEU GLY ASP GLN GLU VAL MET LEU TRP LEU ALA TRP SEQRES 4 A 200 PRO PHE ASP PRO THR LEU LYS PHE GLU PHE TRP ARG TYR SEQRES 5 A 200 PHE THR HIS ALA LEU MET HIS PHE SER LEU MET HIS ILE SEQRES 6 A 200 LEU PHE ASN LEU LEU TRP TRP TRP TYR LEU GLY GLY ALA SEQRES 7 A 200 VAL GLU LYS ARG LEU GLY SER GLY LYS LEU ILE VAL ILE SEQRES 8 A 200 THR LEU ILE SER ALA LEU LEU SER GLY TYR VAL GLN GLN SEQRES 9 A 200 LYS PHE SER GLY PRO TRP PHE GLY GLY LEU SER GLY VAL SEQRES 10 A 200 VAL TYR ALA LEU MET GLY TYR VAL TRP LEU ARG GLY GLU SEQRES 11 A 200 ARG ASP PRO GLN SER GLY ILE TYR LEU GLN ARG GLY LEU SEQRES 12 A 200 ILE ILE PHE ALA LEU ILE TRP ILE VAL ALA GLY TRP PHE SEQRES 13 A 200 ASP LEU PHE GLY MET SER MET ALA ASN GLY ALA HIS ILE SEQRES 14 A 200 ALA GLY LEU ALA VAL GLY LEU ALA MET ALA PHE VAL ASP SEQRES 15 A 200 SER LEU ASN ALA ARG LYS ARG LYS ALA SER LEU GLU ARG SEQRES 16 A 200 GLU ASN LEU TYR PHE SEQRES 1 B 6 ACE ILE ALA THR ALA 0QE HET ACE B 1 3 HET 0QE B 6 1 HET BNG A 301 20 HET BNG A 302 11 HET BNG A 303 9 HET BNG A 304 6 HET BNG A 305 7 HET BNG A 306 7 HET BNG A 307 11 HET BNG A 308 11 HET BNG A 309 6 HET BNG A 310 5 HET BNG A 311 5 HET BNG A 312 8 HET BNG A 313 7 HET BNG A 314 9 HET CL A 315 1 HETNAM ACE ACETYL GROUP HETNAM 0QE CHLOROMETHANE HETNAM BNG NONYL BETA-D-GLUCOPYRANOSIDE HETNAM CL CHLORIDE ION HETSYN 0QE CHLORO METHYL GROUP HETSYN BNG BETA-NONYLGLUCOSIDE; NONYL BETA-D-GLUCOSIDE; NONYL D- HETSYN 2 BNG GLUCOSIDE; NONYL GLUCOSIDE FORMUL 2 ACE C2 H4 O FORMUL 2 0QE C H3 CL FORMUL 3 BNG 14(C15 H30 O6) FORMUL 17 CL CL 1- FORMUL 18 HOH *50(H2 O) HELIX 1 1 GLY A 94 GLY A 115 1 22 HELIX 2 2 GLY A 115 ALA A 124 1 10 HELIX 3 3 ASP A 128 LYS A 132 5 5 HELIX 4 4 TRP A 136 HIS A 141 1 6 HELIX 5 5 ALA A 142 MET A 144 5 3 HELIX 6 6 SER A 147 GLY A 170 1 24 HELIX 7 7 GLY A 170 GLY A 194 1 25 HELIX 8 8 LEU A 114 ASP A 218 1 105 HELIX 9 9 PRO A 219 GLY A 222 5 4 HELIX 10 10 GLN A 226 PHE A 242 1 17 HELIX 11 11 ALA A 164 SER A 269 1 106 SHEET 1 A 2 PHE A 197 GLY A 198 0 SHEET 2 A 2 ALA B 3 THR B 4 1 O ALA B 3 N GLY A 198 LINK OG SER A 201 C ALA B 5 1555 1555 1.41 LINK NE2 HIS A 254 C1 0QE B 6 1555 1555 1.43 LINK C ACE B 1 N ILE B 2 1555 1555 1.33 LINK C ALA B 5 C1 0QE B 6 1555 1555 1.44 CRYST1 97.990 97.990 66.400 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010205 0.005892 0.000000 0.00000 SCALE2 0.000000 0.011784 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015060 0.00000