data_4QOA # _entry.id 4QOA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4QOA pdb_00004qoa 10.2210/pdb4qoa/pdb RCSB RCSB086305 ? ? WWPDB D_1000086305 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-417915 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4QOA _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-06-19 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a putative periplasmic protein (BACUNI_04550) from Bacteroides uniformis ATCC 8492 at 2.75 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4QOA _cell.length_a 103.311 _cell.length_b 103.311 _cell.length_c 90.830 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4QOA _symmetry.Int_Tables_number 179 _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative periplasmic protein' 14669.667 1 ? ? 'UNP residues 21-146' ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 3 water nat water 18.015 17 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GGDVITQDTKQLPLTARNFINQYFSKPHISHIKIESEILQTKKYEVLLTDRTEIDFDKKGNWLEVDCKKSAVPEALIPVP VKEYVKANFPREIITKIERGRTGVEIELGNDYSLKFNKKGKFVS(MSE)DD ; _entity_poly.pdbx_seq_one_letter_code_can ;GGDVITQDTKQLPLTARNFINQYFSKPHISHIKIESEILQTKKYEVLLTDRTEIDFDKKGNWLEVDCKKSAVPEALIPVP VKEYVKANFPREIITKIERGRTGVEIELGNDYSLKFNKKGKFVSMDD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-417915 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 ASP n 1 4 VAL n 1 5 ILE n 1 6 THR n 1 7 GLN n 1 8 ASP n 1 9 THR n 1 10 LYS n 1 11 GLN n 1 12 LEU n 1 13 PRO n 1 14 LEU n 1 15 THR n 1 16 ALA n 1 17 ARG n 1 18 ASN n 1 19 PHE n 1 20 ILE n 1 21 ASN n 1 22 GLN n 1 23 TYR n 1 24 PHE n 1 25 SER n 1 26 LYS n 1 27 PRO n 1 28 HIS n 1 29 ILE n 1 30 SER n 1 31 HIS n 1 32 ILE n 1 33 LYS n 1 34 ILE n 1 35 GLU n 1 36 SER n 1 37 GLU n 1 38 ILE n 1 39 LEU n 1 40 GLN n 1 41 THR n 1 42 LYS n 1 43 LYS n 1 44 TYR n 1 45 GLU n 1 46 VAL n 1 47 LEU n 1 48 LEU n 1 49 THR n 1 50 ASP n 1 51 ARG n 1 52 THR n 1 53 GLU n 1 54 ILE n 1 55 ASP n 1 56 PHE n 1 57 ASP n 1 58 LYS n 1 59 LYS n 1 60 GLY n 1 61 ASN n 1 62 TRP n 1 63 LEU n 1 64 GLU n 1 65 VAL n 1 66 ASP n 1 67 CYS n 1 68 LYS n 1 69 LYS n 1 70 SER n 1 71 ALA n 1 72 VAL n 1 73 PRO n 1 74 GLU n 1 75 ALA n 1 76 LEU n 1 77 ILE n 1 78 PRO n 1 79 VAL n 1 80 PRO n 1 81 VAL n 1 82 LYS n 1 83 GLU n 1 84 TYR n 1 85 VAL n 1 86 LYS n 1 87 ALA n 1 88 ASN n 1 89 PHE n 1 90 PRO n 1 91 ARG n 1 92 GLU n 1 93 ILE n 1 94 ILE n 1 95 THR n 1 96 LYS n 1 97 ILE n 1 98 GLU n 1 99 ARG n 1 100 GLY n 1 101 ARG n 1 102 THR n 1 103 GLY n 1 104 VAL n 1 105 GLU n 1 106 ILE n 1 107 GLU n 1 108 LEU n 1 109 GLY n 1 110 ASN n 1 111 ASP n 1 112 TYR n 1 113 SER n 1 114 LEU n 1 115 LYS n 1 116 PHE n 1 117 ASN n 1 118 LYS n 1 119 LYS n 1 120 GLY n 1 121 LYS n 1 122 PHE n 1 123 VAL n 1 124 SER n 1 125 MSE n 1 126 ASP n 1 127 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BACUNI_04550 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides uniformis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 411479 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 8492 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A7VAB9_BACUN _struct_ref.pdbx_db_accession A7VAB9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GDVITQDTKQLPLTARNFINQYFSKPHISHIKIESEILQTKKYEVLLTDRTEIDFDKKGNWLEVDCKKSAVPEALIPVPV KEYVKANFPREIITKIERGRTGVEIELGNDYSLKFNKKGKFVSMDD ; _struct_ref.pdbx_align_begin 21 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4QOA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 127 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A7VAB9 _struct_ref_seq.db_align_beg 21 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 146 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 21 _struct_ref_seq.pdbx_auth_seq_align_end 146 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4QOA _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A7VAB9 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4QOA # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 4.77 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 74.21 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '24.00% polyethylene glycol 3350, 0.16M tri-ammonium citrate, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.details 'Rhodium-coated vertical and horizontal focusing mirrors; liquid-nitrogen cooled double crystal Si(111) monochromator' _diffrn_detector.pdbx_collection_date 2014-03-27 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9116 1.0 2 0.9794 1.0 3 0.9793 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.pdbx_wavelength_list 0.9116,0.9794,0.9793 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4QOA _reflns.d_resolution_high 2.75 _reflns.d_resolution_low 29.823 _reflns.number_all 7860 _reflns.number_obs 7860 _reflns.pdbx_netI_over_sigmaI 15.700 _reflns.pdbx_Rsym_value 0.084 _reflns.pdbx_redundancy 9.100 _reflns.percent_possible_obs 99.800 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.750 2.820 ? 5000 ? 0.012 0.7 1.185 ? 8.800 ? 565 100.000 1 1 2.820 2.900 ? 4393 ? 0.012 0.7 1.054 ? 8.100 ? 543 100.000 2 1 2.900 2.980 ? 5325 ? 0.012 1.2 0.667 ? 9.900 ? 537 99.900 3 1 2.980 3.070 ? 5185 ? 0.012 1.4 0.541 ? 10.000 ? 520 100.000 4 1 3.070 3.180 ? 4835 ? 0.012 1.7 0.453 ? 9.600 ? 503 100.000 5 1 3.180 3.290 ? 4615 ? 0.012 2.9 0.261 ? 9.300 ? 497 100.000 6 1 3.290 3.410 ? 4208 ? 0.012 3.5 0.213 ? 9.000 ? 466 99.900 7 1 3.410 3.550 ? 3691 ? 0.012 4.7 0.156 ? 7.900 ? 467 99.700 8 1 3.550 3.710 ? 4175 ? 0.012 6.4 0.116 ? 9.500 ? 441 100.000 9 1 3.710 3.890 ? 4105 ? 0.012 7.3 0.100 ? 9.700 ? 423 100.000 10 1 3.890 4.100 ? 3904 ? 0.012 8.8 0.078 ? 9.500 ? 411 99.800 11 1 4.100 4.350 ? 3492 ? 0.012 10.0 0.061 ? 9.100 ? 382 100.000 12 1 4.350 4.650 ? 3005 ? 0.012 11.6 0.051 ? 8.300 ? 364 100.000 13 1 4.650 5.020 ? 3135 ? 0.012 12.7 0.050 ? 9.200 ? 340 100.000 14 1 5.020 5.500 ? 3058 ? 0.012 11.3 0.056 ? 9.500 ? 322 100.000 15 1 5.500 6.150 ? 2688 ? 0.012 10.0 0.064 ? 9.200 ? 291 99.700 16 1 6.150 7.100 ? 1962 ? 0.012 11.4 0.056 ? 7.500 ? 263 99.900 17 1 7.100 8.700 ? 2094 ? 0.012 14.9 0.040 ? 9.100 ? 231 100.000 18 1 8.700 12.300 ? 1487 ? 0.012 16.6 0.034 ? 8.300 ? 179 99.400 19 1 12.300 29.823 ? 796 ? 0.012 17.7 0.033 ? 6.900 ? 115 93.100 20 1 # _refine.entry_id 4QOA _refine.ls_d_res_high 2.7500 _refine.ls_d_res_low 29.823 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.8300 _refine.ls_number_reflns_obs 7840 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS 3.THE MAD PHASES WERE USED AS RESTRAINTS DURING THE REFINEMENT. 4. 1,2-ETHANEDIOL USED AS A CRYOPROTECTANT WAS MODELED INTO THE STRUCTURE. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2166 _refine.ls_R_factor_R_work 0.2150 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2498 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.6000 _refine.ls_number_reflns_R_free 361 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 87.8228 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 14.8621 _refine.aniso_B[2][2] 14.8621 _refine.aniso_B[3][3] -29.7241 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9249 _refine.correlation_coeff_Fo_to_Fc_free 0.9142 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 158.890 _refine.B_iso_min 50.710 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.750 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4QOA _refine_analyze.Luzzati_coordinate_error_obs 0.535 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1005 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 17 _refine_hist.number_atoms_total 1030 _refine_hist.d_res_high 2.7500 _refine_hist.d_res_low 29.823 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 487 ? ? 6.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 30 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 142 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1030 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 140 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 1105 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1030 0.009 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1389 1.170 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 2.490 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 2.270 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.7500 _refine_ls_shell.d_res_low 3.0700 _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.percent_reflns_obs 99.8300 _refine_ls_shell.number_reflns_R_work 2061 _refine_ls_shell.R_factor_all 0.2635 _refine_ls_shell.R_factor_R_work 0.2617 _refine_ls_shell.R_factor_R_free 0.2982 _refine_ls_shell.percent_reflns_R_free 4.6700 _refine_ls_shell.number_reflns_R_free 101 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2162 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4QOA _struct.title 'Crystal structure of a putative periplasmic protein (BACUNI_04550) from Bacteroides uniformis ATCC 8492 at 2.75 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Two copies of DUF2874 domain (PF11396), BLIP-like fold, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.entry_id 4QOA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 8 ? LEU A 12 ? ASP A 27 LEU A 31 5 ? 5 HELX_P HELX_P2 2 PRO A 13 ? PHE A 24 ? PRO A 32 PHE A 43 1 ? 12 HELX_P HELX_P3 3 PRO A 73 ? ILE A 77 ? PRO A 92 ILE A 96 5 ? 5 HELX_P HELX_P4 4 PRO A 78 ? PHE A 89 ? PRO A 97 PHE A 108 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A SER 124 C ? ? ? 1_555 A MSE 125 N ? ? A SER 143 A MSE 144 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale2 covale both ? A MSE 125 C ? ? ? 1_555 A ASP 126 N ? ? A MSE 144 A ASP 145 1_555 ? ? ? ? ? ? ? 1.352 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 4 ? THR A 6 ? VAL A 23 THR A 25 A 2 ILE A 32 ? ILE A 34 ? ILE A 51 ILE A 53 B 1 LYS A 42 ? LEU A 47 ? LYS A 61 LEU A 66 B 2 GLU A 53 ? ASP A 57 ? GLU A 72 ASP A 76 B 3 TRP A 62 ? ASP A 66 ? TRP A 81 ASP A 85 B 4 ILE A 94 ? ARG A 99 ? ILE A 113 ARG A 118 B 5 GLY A 103 ? LEU A 108 ? GLY A 122 LEU A 127 B 6 SER A 113 ? ASN A 117 ? SER A 132 ASN A 136 B 7 PHE A 122 ? ASP A 126 ? PHE A 141 ASP A 145 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 6 ? N THR A 25 O ILE A 32 ? O ILE A 51 B 1 2 N VAL A 46 ? N VAL A 65 O ILE A 54 ? O ILE A 73 B 2 3 N GLU A 53 ? N GLU A 72 O ASP A 66 ? O ASP A 85 B 3 4 N VAL A 65 ? N VAL A 84 O ILE A 97 ? O ILE A 116 B 4 5 N LYS A 96 ? N LYS A 115 O GLU A 107 ? O GLU A 126 B 5 6 N VAL A 104 ? N VAL A 123 O PHE A 116 ? O PHE A 135 B 6 7 N LYS A 115 ? N LYS A 134 O SER A 124 ? O SER A 143 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 201 ? 5 'BINDING SITE FOR RESIDUE EDO A 201' AC2 Software A EDO 202 ? 4 'BINDING SITE FOR RESIDUE EDO A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 PRO A 13 ? PRO A 32 . ? 1_555 ? 2 AC1 5 LEU A 14 ? LEU A 33 . ? 1_555 ? 3 AC1 5 THR A 15 ? THR A 34 . ? 1_555 ? 4 AC1 5 ARG A 17 ? ARG A 36 . ? 10_666 ? 5 AC1 5 EDO C . ? EDO A 202 . ? 10_666 ? 6 AC2 4 THR A 9 ? THR A 28 . ? 1_555 ? 7 AC2 4 ARG A 17 ? ARG A 36 . ? 1_555 ? 8 AC2 4 EDO B . ? EDO A 201 . ? 10_666 ? 9 AC2 4 HOH D . ? HOH A 309 . ? 1_555 ? # _atom_sites.entry_id 4QOA _atom_sites.fract_transf_matrix[1][1] 0.009680 _atom_sites.fract_transf_matrix[1][2] 0.005588 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011177 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011010 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLY 2 21 21 GLY GLY A . n A 1 3 ASP 3 22 22 ASP ASP A . n A 1 4 VAL 4 23 23 VAL VAL A . n A 1 5 ILE 5 24 24 ILE ILE A . n A 1 6 THR 6 25 25 THR THR A . n A 1 7 GLN 7 26 26 GLN GLN A . n A 1 8 ASP 8 27 27 ASP ASP A . n A 1 9 THR 9 28 28 THR THR A . n A 1 10 LYS 10 29 29 LYS LYS A . n A 1 11 GLN 11 30 30 GLN GLN A . n A 1 12 LEU 12 31 31 LEU LEU A . n A 1 13 PRO 13 32 32 PRO PRO A . n A 1 14 LEU 14 33 33 LEU LEU A . n A 1 15 THR 15 34 34 THR THR A . n A 1 16 ALA 16 35 35 ALA ALA A . n A 1 17 ARG 17 36 36 ARG ARG A . n A 1 18 ASN 18 37 37 ASN ASN A . n A 1 19 PHE 19 38 38 PHE PHE A . n A 1 20 ILE 20 39 39 ILE ILE A . n A 1 21 ASN 21 40 40 ASN ASN A . n A 1 22 GLN 22 41 41 GLN GLN A . n A 1 23 TYR 23 42 42 TYR TYR A . n A 1 24 PHE 24 43 43 PHE PHE A . n A 1 25 SER 25 44 44 SER SER A . n A 1 26 LYS 26 45 45 LYS LYS A . n A 1 27 PRO 27 46 46 PRO PRO A . n A 1 28 HIS 28 47 47 HIS HIS A . n A 1 29 ILE 29 48 48 ILE ILE A . n A 1 30 SER 30 49 49 SER SER A . n A 1 31 HIS 31 50 50 HIS HIS A . n A 1 32 ILE 32 51 51 ILE ILE A . n A 1 33 LYS 33 52 52 LYS LYS A . n A 1 34 ILE 34 53 53 ILE ILE A . n A 1 35 GLU 35 54 54 GLU GLU A . n A 1 36 SER 36 55 55 SER SER A . n A 1 37 GLU 37 56 56 GLU GLU A . n A 1 38 ILE 38 57 57 ILE ILE A . n A 1 39 LEU 39 58 58 LEU LEU A . n A 1 40 GLN 40 59 59 GLN GLN A . n A 1 41 THR 41 60 60 THR THR A . n A 1 42 LYS 42 61 61 LYS LYS A . n A 1 43 LYS 43 62 62 LYS LYS A . n A 1 44 TYR 44 63 63 TYR TYR A . n A 1 45 GLU 45 64 64 GLU GLU A . n A 1 46 VAL 46 65 65 VAL VAL A . n A 1 47 LEU 47 66 66 LEU LEU A . n A 1 48 LEU 48 67 67 LEU LEU A . n A 1 49 THR 49 68 68 THR THR A . n A 1 50 ASP 50 69 69 ASP ASP A . n A 1 51 ARG 51 70 70 ARG ARG A . n A 1 52 THR 52 71 71 THR THR A . n A 1 53 GLU 53 72 72 GLU GLU A . n A 1 54 ILE 54 73 73 ILE ILE A . n A 1 55 ASP 55 74 74 ASP ASP A . n A 1 56 PHE 56 75 75 PHE PHE A . n A 1 57 ASP 57 76 76 ASP ASP A . n A 1 58 LYS 58 77 77 LYS LYS A . n A 1 59 LYS 59 78 78 LYS LYS A . n A 1 60 GLY 60 79 79 GLY GLY A . n A 1 61 ASN 61 80 80 ASN ASN A . n A 1 62 TRP 62 81 81 TRP TRP A . n A 1 63 LEU 63 82 82 LEU LEU A . n A 1 64 GLU 64 83 83 GLU GLU A . n A 1 65 VAL 65 84 84 VAL VAL A . n A 1 66 ASP 66 85 85 ASP ASP A . n A 1 67 CYS 67 86 86 CYS CYS A . n A 1 68 LYS 68 87 87 LYS LYS A . n A 1 69 LYS 69 88 88 LYS LYS A . n A 1 70 SER 70 89 89 SER SER A . n A 1 71 ALA 71 90 90 ALA ALA A . n A 1 72 VAL 72 91 91 VAL VAL A . n A 1 73 PRO 73 92 92 PRO PRO A . n A 1 74 GLU 74 93 93 GLU GLU A . n A 1 75 ALA 75 94 94 ALA ALA A . n A 1 76 LEU 76 95 95 LEU LEU A . n A 1 77 ILE 77 96 96 ILE ILE A . n A 1 78 PRO 78 97 97 PRO PRO A . n A 1 79 VAL 79 98 98 VAL VAL A . n A 1 80 PRO 80 99 99 PRO PRO A . n A 1 81 VAL 81 100 100 VAL VAL A . n A 1 82 LYS 82 101 101 LYS LYS A . n A 1 83 GLU 83 102 102 GLU GLU A . n A 1 84 TYR 84 103 103 TYR TYR A . n A 1 85 VAL 85 104 104 VAL VAL A . n A 1 86 LYS 86 105 105 LYS LYS A . n A 1 87 ALA 87 106 106 ALA ALA A . n A 1 88 ASN 88 107 107 ASN ASN A . n A 1 89 PHE 89 108 108 PHE PHE A . n A 1 90 PRO 90 109 109 PRO PRO A . n A 1 91 ARG 91 110 110 ARG ARG A . n A 1 92 GLU 92 111 111 GLU GLU A . n A 1 93 ILE 93 112 112 ILE ILE A . n A 1 94 ILE 94 113 113 ILE ILE A . n A 1 95 THR 95 114 114 THR THR A . n A 1 96 LYS 96 115 115 LYS LYS A . n A 1 97 ILE 97 116 116 ILE ILE A . n A 1 98 GLU 98 117 117 GLU GLU A . n A 1 99 ARG 99 118 118 ARG ARG A . n A 1 100 GLY 100 119 119 GLY GLY A . n A 1 101 ARG 101 120 120 ARG ARG A . n A 1 102 THR 102 121 121 THR THR A . n A 1 103 GLY 103 122 122 GLY GLY A . n A 1 104 VAL 104 123 123 VAL VAL A . n A 1 105 GLU 105 124 124 GLU GLU A . n A 1 106 ILE 106 125 125 ILE ILE A . n A 1 107 GLU 107 126 126 GLU GLU A . n A 1 108 LEU 108 127 127 LEU LEU A . n A 1 109 GLY 109 128 128 GLY GLY A . n A 1 110 ASN 110 129 129 ASN ASN A . n A 1 111 ASP 111 130 130 ASP ASP A . n A 1 112 TYR 112 131 131 TYR TYR A . n A 1 113 SER 113 132 132 SER SER A . n A 1 114 LEU 114 133 133 LEU LEU A . n A 1 115 LYS 115 134 134 LYS LYS A . n A 1 116 PHE 116 135 135 PHE PHE A . n A 1 117 ASN 117 136 136 ASN ASN A . n A 1 118 LYS 118 137 137 LYS LYS A . n A 1 119 LYS 119 138 138 LYS LYS A . n A 1 120 GLY 120 139 139 GLY GLY A . n A 1 121 LYS 121 140 140 LYS LYS A . n A 1 122 PHE 122 141 141 PHE PHE A . n A 1 123 VAL 123 142 142 VAL VAL A . n A 1 124 SER 124 143 143 SER SER A . n A 1 125 MSE 125 144 144 MSE MSE A . n A 1 126 ASP 126 145 145 ASP ASP A . n A 1 127 ASP 127 146 146 ASP ASP A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 201 147 EDO EDO A . C 2 EDO 1 202 148 EDO EDO A . D 3 HOH 1 301 149 HOH HOH A . D 3 HOH 2 302 150 HOH HOH A . D 3 HOH 3 303 151 HOH HOH A . D 3 HOH 4 304 152 HOH HOH A . D 3 HOH 5 305 153 HOH HOH A . D 3 HOH 6 306 154 HOH HOH A . D 3 HOH 7 307 155 HOH HOH A . D 3 HOH 8 308 156 HOH HOH A . D 3 HOH 9 309 157 HOH HOH A . D 3 HOH 10 310 158 HOH HOH A . D 3 HOH 11 311 159 HOH HOH A . D 3 HOH 12 312 160 HOH HOH A . D 3 HOH 13 313 161 HOH HOH A . D 3 HOH 14 314 162 HOH HOH A . D 3 HOH 15 315 163 HOH HOH A . D 3 HOH 16 316 164 HOH HOH A . D 3 HOH 17 317 165 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 125 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 144 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4410 ? 1 MORE -24 ? 1 'SSA (A^2)' 15110 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z+2/3 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 60.5533333333 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-16 2 'Structure model' 1 1 2017-11-22 3 'Structure model' 1 2 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' database_2 3 3 'Structure model' struct_conn 4 3 'Structure model' struct_ref_seq_dif 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.classification' 2 2 'Structure model' '_software.name' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 3 'Structure model' '_struct_ref_seq_dif.details' 7 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 28.7089 _pdbx_refine_tls.origin_y 24.7284 _pdbx_refine_tls.origin_z 28.5723 _pdbx_refine_tls.T[1][1] -0.1368 _pdbx_refine_tls.T[2][2] -0.1862 _pdbx_refine_tls.T[3][3] 0.0583 _pdbx_refine_tls.T[1][2] 0.0861 _pdbx_refine_tls.T[1][3] 0.0272 _pdbx_refine_tls.T[2][3] 0.0637 _pdbx_refine_tls.L[1][1] 1.8469 _pdbx_refine_tls.L[2][2] 2.0029 _pdbx_refine_tls.L[3][3] 2.2761 _pdbx_refine_tls.L[1][2] -1.3048 _pdbx_refine_tls.L[1][3] -1.6263 _pdbx_refine_tls.L[2][3] 1.5563 _pdbx_refine_tls.S[1][1] -0.1975 _pdbx_refine_tls.S[2][2] -0.0189 _pdbx_refine_tls.S[3][3] 0.2164 _pdbx_refine_tls.S[1][2] -0.0240 _pdbx_refine_tls.S[1][3] 0.1807 _pdbx_refine_tls.S[2][3] -0.3548 _pdbx_refine_tls.S[2][1] 0.2042 _pdbx_refine_tls.S[3][1] 0.4577 _pdbx_refine_tls.S[3][2] -0.2557 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 21 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 146 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 SCALA 3.3.20 ? package 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' ? ? ? 6 BUSTER-TNT 2.10.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 BUSTER 2.10.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 4QOA _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING GLY 0 FOLLOWED BY RESIDUES 21-146 OF THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 46 ? ? -96.78 52.31 2 1 SER A 49 ? ? -100.95 76.96 3 1 HIS A 50 ? ? 74.84 153.68 4 1 LYS A 87 ? ? 58.05 -95.40 5 1 ALA A 106 ? ? -90.19 -62.79 6 1 VAL A 142 ? ? -126.39 -62.86 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 45 ? CG ? A LYS 26 CG 2 1 Y 1 A LYS 45 ? CD ? A LYS 26 CD 3 1 Y 1 A LYS 45 ? CE ? A LYS 26 CE 4 1 Y 1 A LYS 45 ? NZ ? A LYS 26 NZ 5 1 Y 1 A ARG 70 ? CG ? A ARG 51 CG 6 1 Y 1 A ARG 70 ? CD ? A ARG 51 CD 7 1 Y 1 A ARG 70 ? NE ? A ARG 51 NE 8 1 Y 1 A ARG 70 ? CZ ? A ARG 51 CZ 9 1 Y 1 A ARG 70 ? NH1 ? A ARG 51 NH1 10 1 Y 1 A ARG 70 ? NH2 ? A ARG 51 NH2 11 1 Y 1 A LYS 105 ? CG ? A LYS 86 CG 12 1 Y 1 A LYS 105 ? CD ? A LYS 86 CD 13 1 Y 1 A LYS 105 ? CE ? A LYS 86 CE 14 1 Y 1 A LYS 105 ? NZ ? A LYS 86 NZ 15 1 Y 1 A LYS 138 ? CG ? A LYS 119 CG 16 1 Y 1 A LYS 138 ? CD ? A LYS 119 CD 17 1 Y 1 A LYS 138 ? CE ? A LYS 119 CE 18 1 Y 1 A LYS 138 ? NZ ? A LYS 119 NZ 19 1 Y 1 A ASP 146 ? CG ? A ASP 127 CG 20 1 Y 1 A ASP 146 ? OD1 ? A ASP 127 OD1 21 1 Y 1 A ASP 146 ? OD2 ? A ASP 127 OD2 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 0 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH #