HEADER TRANSFERASE/TRANSFERASE INHIBITOR 22-JUN-14 4QP3 TITLE CRYSTAL STRUCTURE OF ERK2 IN COMPLEX WITH (S)-2-((9H-PURIN-6-YL) TITLE 2 AMINO)-3-PHENYLPROPAN-1-OL COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MAP KINASE 1, MAPK 1, ERT1, EXTRACELLULAR SIGNAL-REGULATED COMPND 5 KINASE 2, ERK-2, MAP KINASE ISOFORM P42, P42-MAPK, MITOGEN-ACTIVATED COMPND 6 PROTEIN KINASE 2, MAP KINASE 2, MAPK 2; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK1, ERK2, PRKM1, PRKM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.YIN,W.WANG REVDAT 2 16-DEC-15 4QP3 1 JRNL REVDAT 1 23-SEP-15 4QP3 0 JRNL AUTH D.J.BURDICK,S.WANG,C.HEISE,B.PAN,J.DRUMMOND,J.YIN,L.GOESER, JRNL AUTH 2 S.MAGNUSON,J.BLANEY,J.MOFFAT,W.WANG,H.CHEN JRNL TITL FRAGMENT-BASED DISCOVERY OF POTENT ERK2 PYRROLOPYRAZINE JRNL TITL 2 INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 25 4728 2015 JRNL REFN ISSN 0960-894X JRNL PMID 26338362 JRNL DOI 10.1016/J.BMCL.2015.08.048 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 28853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8326 - 5.5886 0.85 2728 112 0.2237 0.2486 REMARK 3 2 5.5886 - 4.4405 0.89 2679 146 0.1998 0.2371 REMARK 3 3 4.4405 - 3.8806 0.91 2696 152 0.1906 0.2313 REMARK 3 4 3.8806 - 3.5264 0.93 2696 161 0.2048 0.2759 REMARK 3 5 3.5264 - 3.2740 0.94 2721 156 0.2218 0.2624 REMARK 3 6 3.2740 - 3.0811 0.95 2731 146 0.2441 0.3129 REMARK 3 7 3.0811 - 2.9270 0.95 2753 155 0.2570 0.2950 REMARK 3 8 2.9270 - 2.7997 0.96 2754 144 0.2599 0.2958 REMARK 3 9 2.7997 - 2.6920 0.97 2776 139 0.2636 0.3675 REMARK 3 10 2.6920 - 2.5991 0.97 2807 128 0.2899 0.3587 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5673 REMARK 3 ANGLE : 0.877 7687 REMARK 3 CHIRALITY : 0.071 840 REMARK 3 PLANARITY : 0.003 984 REMARK 3 DIHEDRAL : 13.146 2142 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND (RESID 10:108 OR RESID 335:358 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2044 -28.6158 -18.6225 REMARK 3 T TENSOR REMARK 3 T11: 0.2037 T22: 0.3939 REMARK 3 T33: 0.2084 T12: 0.4170 REMARK 3 T13: 0.0999 T23: 0.1380 REMARK 3 L TENSOR REMARK 3 L11: 0.0221 L22: 0.0068 REMARK 3 L33: 0.0008 L12: -0.0009 REMARK 3 L13: -0.0019 L23: 0.0072 REMARK 3 S TENSOR REMARK 3 S11: -0.1374 S12: -0.2039 S13: -0.1095 REMARK 3 S21: 0.1457 S22: 0.1377 S23: 0.0884 REMARK 3 S31: 0.0067 S32: 0.0327 S33: 0.0196 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 109:334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0870 -31.9684 -27.9562 REMARK 3 T TENSOR REMARK 3 T11: -0.0515 T22: 0.0665 REMARK 3 T33: 0.0945 T12: 0.1140 REMARK 3 T13: 0.0831 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 0.1068 L22: 0.0405 REMARK 3 L33: 0.1135 L12: 0.0261 REMARK 3 L13: -0.0057 L23: -0.0292 REMARK 3 S TENSOR REMARK 3 S11: -0.1627 S12: -0.0295 S13: -0.0464 REMARK 3 S21: -0.0653 S22: 0.0121 S23: 0.0211 REMARK 3 S31: 0.0144 S32: 0.0862 S33: -0.1795 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND (RESID 10:108 OR RESID 335:355 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6232 -62.4405 -53.5180 REMARK 3 T TENSOR REMARK 3 T11: 0.3951 T22: 0.2585 REMARK 3 T33: 0.3471 T12: 0.0305 REMARK 3 T13: -0.1924 T23: 0.0829 REMARK 3 L TENSOR REMARK 3 L11: 0.0258 L22: 0.0038 REMARK 3 L33: 0.0237 L12: 0.0005 REMARK 3 L13: 0.0059 L23: -0.0155 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: -0.0626 S13: -0.0496 REMARK 3 S21: 0.1389 S22: 0.0289 S23: -0.1258 REMARK 3 S31: 0.0618 S32: -0.0029 S33: -0.0039 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 109:334 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3262 -42.0944 -63.0292 REMARK 3 T TENSOR REMARK 3 T11: 0.1359 T22: 0.2203 REMARK 3 T33: 0.1344 T12: -0.0189 REMARK 3 T13: -0.0090 T23: -0.0478 REMARK 3 L TENSOR REMARK 3 L11: 0.0495 L22: 0.0596 REMARK 3 L33: 0.1088 L12: 0.0169 REMARK 3 L13: 0.0352 L23: 0.0249 REMARK 3 S TENSOR REMARK 3 S11: -0.0457 S12: -0.0620 S13: -0.0321 REMARK 3 S21: 0.0451 S22: 0.0114 S23: -0.0685 REMARK 3 S31: -0.0626 S32: -0.2771 S33: -0.0186 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-14. REMARK 100 THE RCSB ID CODE IS RCSB086334. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97740 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28860 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.599 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG3350, 0.2 M PROLINE, AND 0.1 M REMARK 280 HEPES PH7.5, IN A 24-WELL LINBRO PLATES INCUBATED AT 4C, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 138.50650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.54150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.54150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.25325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.54150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.54150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 207.75975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.54150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.54150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 69.25325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.54150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.54150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 207.75975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 138.50650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 GLY A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 ALA A 9 REMARK 465 GLY A 10 REMARK 465 PRO A 11 REMARK 465 THR A 181 REMARK 465 GLY A 182 REMARK 465 PHE A 183 REMARK 465 LEU A 184 REMARK 465 THR A 185 REMARK 465 GLU A 186 REMARK 465 SER A 202 REMARK 465 LYS A 203 REMARK 465 GLY A 204 REMARK 465 MET B -8 REMARK 465 GLY B -7 REMARK 465 SER B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 ALA B 7 REMARK 465 GLY B 8 REMARK 465 ALA B 9 REMARK 465 GLY B 10 REMARK 465 PRO B 11 REMARK 465 MET B 13 REMARK 465 VAL B 14 REMARK 465 ARG B 15 REMARK 465 THR B 181 REMARK 465 GLY B 182 REMARK 465 PHE B 183 REMARK 465 SER B 248 REMARK 465 GLN B 249 REMARK 465 GLU B 250 REMARK 465 ASP B 251 REMARK 465 LEU B 252 REMARK 465 ASN B 253 REMARK 465 CYS B 254 REMARK 465 ILE B 255 REMARK 465 TYR B 358 REMARK 465 ARG B 359 REMARK 465 SER B 360 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 180 CG ND1 CD2 CE1 NE2 REMARK 470 PHE B 19 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS B 180 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 110 -166.39 -161.05 REMARK 500 ARG A 148 -9.05 76.07 REMARK 500 ASP A 149 53.65 -146.82 REMARK 500 ASP A 167 83.19 56.17 REMARK 500 ASP A 175 85.32 -166.33 REMARK 500 ALA A 260 124.27 176.71 REMARK 500 ARG A 261 88.66 56.43 REMARK 500 ASN A 262 47.53 83.90 REMARK 500 LEU A 264 101.42 -179.17 REMARK 500 LEU A 265 102.12 22.05 REMARK 500 SER A 266 -40.36 121.78 REMARK 500 LEU A 267 79.90 20.05 REMARK 500 PRO A 268 77.72 -58.49 REMARK 500 HIS A 269 128.10 -36.55 REMARK 500 LEU A 294 44.81 -103.26 REMARK 500 ASP A 336 -33.19 -159.26 REMARK 500 GLN B 17 -95.89 -115.97 REMARK 500 PHE B 19 -82.30 -76.18 REMARK 500 ARG B 24 -25.98 99.61 REMARK 500 ASN B 27 143.05 -38.21 REMARK 500 LEU B 28 -158.81 -102.46 REMARK 500 ALA B 42 -166.00 -103.40 REMARK 500 THR B 110 -164.25 -161.74 REMARK 500 ARG B 148 -4.98 72.19 REMARK 500 ASP B 149 38.77 -140.79 REMARK 500 ASP B 167 87.61 52.27 REMARK 500 ASP B 175 79.22 -155.76 REMARK 500 GLU B 186 -7.09 72.15 REMARK 500 TYR B 187 -57.25 42.81 REMARK 500 VAL B 188 -151.19 63.14 REMARK 500 LYS B 203 -57.07 -26.68 REMARK 500 SER B 223 7.12 -155.58 REMARK 500 ASN B 224 18.58 58.63 REMARK 500 ASN B 262 36.75 -91.37 REMARK 500 LEU B 264 51.66 -67.90 REMARK 500 LEU B 267 119.26 -174.39 REMARK 500 PRO B 268 -113.83 -93.54 REMARK 500 LEU B 294 52.39 -90.98 REMARK 500 ASP B 318 86.32 -157.73 REMARK 500 PHE B 331 84.27 52.92 REMARK 500 ASP B 332 -76.78 -46.85 REMARK 500 MET B 333 55.47 -107.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 260 ARG A 261 -148.93 REMARK 500 SER A 266 LEU A 267 141.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LEU A 265 16.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 563 DISTANCE = 6.12 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 36Q A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 36Q B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QP1 RELATED DB: PDB REMARK 900 RELATED ID: 4QP2 RELATED DB: PDB REMARK 900 RELATED ID: 4QP4 RELATED DB: PDB REMARK 900 RELATED ID: 4QP6 RELATED DB: PDB REMARK 900 RELATED ID: 4QP7 RELATED DB: PDB REMARK 900 RELATED ID: 4QP8 RELATED DB: PDB REMARK 900 RELATED ID: 4QP9 RELATED DB: PDB REMARK 900 RELATED ID: 4QPA RELATED DB: PDB DBREF 4QP3 A 1 360 UNP P28482 MK01_HUMAN 1 360 DBREF 4QP3 B 1 360 UNP P28482 MK01_HUMAN 1 360 SEQADV 4QP3 MET A -8 UNP P28482 EXPRESSION TAG SEQADV 4QP3 GLY A -7 UNP P28482 EXPRESSION TAG SEQADV 4QP3 SER A -6 UNP P28482 EXPRESSION TAG SEQADV 4QP3 HIS A -5 UNP P28482 EXPRESSION TAG SEQADV 4QP3 HIS A -4 UNP P28482 EXPRESSION TAG SEQADV 4QP3 HIS A -3 UNP P28482 EXPRESSION TAG SEQADV 4QP3 HIS A -2 UNP P28482 EXPRESSION TAG SEQADV 4QP3 HIS A -1 UNP P28482 EXPRESSION TAG SEQADV 4QP3 HIS A 0 UNP P28482 EXPRESSION TAG SEQADV 4QP3 MET B -8 UNP P28482 EXPRESSION TAG SEQADV 4QP3 GLY B -7 UNP P28482 EXPRESSION TAG SEQADV 4QP3 SER B -6 UNP P28482 EXPRESSION TAG SEQADV 4QP3 HIS B -5 UNP P28482 EXPRESSION TAG SEQADV 4QP3 HIS B -4 UNP P28482 EXPRESSION TAG SEQADV 4QP3 HIS B -3 UNP P28482 EXPRESSION TAG SEQADV 4QP3 HIS B -2 UNP P28482 EXPRESSION TAG SEQADV 4QP3 HIS B -1 UNP P28482 EXPRESSION TAG SEQADV 4QP3 HIS B 0 UNP P28482 EXPRESSION TAG SEQRES 1 A 369 MET GLY SER HIS HIS HIS HIS HIS HIS MET ALA ALA ALA SEQRES 2 A 369 ALA ALA ALA GLY ALA GLY PRO GLU MET VAL ARG GLY GLN SEQRES 3 A 369 VAL PHE ASP VAL GLY PRO ARG TYR THR ASN LEU SER TYR SEQRES 4 A 369 ILE GLY GLU GLY ALA TYR GLY MET VAL CYS SER ALA TYR SEQRES 5 A 369 ASP ASN VAL ASN LYS VAL ARG VAL ALA ILE LYS LYS ILE SEQRES 6 A 369 SER PRO PHE GLU HIS GLN THR TYR CYS GLN ARG THR LEU SEQRES 7 A 369 ARG GLU ILE LYS ILE LEU LEU ARG PHE ARG HIS GLU ASN SEQRES 8 A 369 ILE ILE GLY ILE ASN ASP ILE ILE ARG ALA PRO THR ILE SEQRES 9 A 369 GLU GLN MET LYS ASP VAL TYR ILE VAL GLN ASP LEU MET SEQRES 10 A 369 GLU THR ASP LEU TYR LYS LEU LEU LYS THR GLN HIS LEU SEQRES 11 A 369 SER ASN ASP NEP ILE CYS TYR PHE LEU TYR GLN ILE LEU SEQRES 12 A 369 ARG GLY LEU LYS TYR ILE HIS SER ALA ASN VAL LEU HIS SEQRES 13 A 369 ARG ASP LEU LYS PRO SER ASN LEU LEU LEU ASN THR THR SEQRES 14 A 369 CYS ASP LEU LYS ILE CYS ASP PHE GLY LEU ALA ARG VAL SEQRES 15 A 369 ALA ASP PRO ASP HIS ASP HIS THR GLY PHE LEU THR GLU SEQRES 16 A 369 TYR VAL ALA THR ARG TRP TYR ARG ALA PRO GLU ILE MET SEQRES 17 A 369 LEU ASN SER LYS GLY TYR THR LYS SER ILE ASP ILE TRP SEQRES 18 A 369 SER VAL GLY CYS ILE LEU ALA GLU MET LEU SER ASN ARG SEQRES 19 A 369 PRO ILE PHE PRO GLY LYS HIS TYR LEU ASP GLN LEU ASN SEQRES 20 A 369 HIS ILE LEU GLY ILE LEU GLY SER PRO SER GLN GLU ASP SEQRES 21 A 369 LEU ASN CYS ILE ILE ASN LEU LYS ALA ARG ASN TYR LEU SEQRES 22 A 369 LEU SER LEU PRO HIS LYS ASN LYS VAL PRO TRP ASN ARG SEQRES 23 A 369 LEU PHE PRO ASN ALA ASP SER LYS ALA LEU ASP LEU LEU SEQRES 24 A 369 ASP LYS MET LEU THR PHE ASN PRO HIS LYS ARG ILE GLU SEQRES 25 A 369 VAL GLU GLN ALA LEU ALA HIS PRO TYR LEU GLU GLN TYR SEQRES 26 A 369 TYR ASP PRO SER ASP GLU PRO ILE ALA GLU ALA PRO PHE SEQRES 27 A 369 LYS PHE ASP MET GLU LEU ASP ASP LEU PRO LYS GLU LYS SEQRES 28 A 369 LEU LYS GLU LEU ILE PHE GLU GLU THR ALA ARG PHE GLN SEQRES 29 A 369 PRO GLY TYR ARG SER SEQRES 1 B 369 MET GLY SER HIS HIS HIS HIS HIS HIS MET ALA ALA ALA SEQRES 2 B 369 ALA ALA ALA GLY ALA GLY PRO GLU MET VAL ARG GLY GLN SEQRES 3 B 369 VAL PHE ASP VAL GLY PRO ARG TYR THR ASN LEU SER TYR SEQRES 4 B 369 ILE GLY GLU GLY ALA TYR GLY MET VAL CYS SER ALA TYR SEQRES 5 B 369 ASP ASN VAL ASN LYS VAL ARG VAL ALA ILE LYS LYS ILE SEQRES 6 B 369 SER PRO PHE GLU HIS GLN THR TYR CYS GLN ARG THR LEU SEQRES 7 B 369 ARG GLU ILE LYS ILE LEU LEU ARG PHE ARG HIS GLU ASN SEQRES 8 B 369 ILE ILE GLY ILE ASN ASP ILE ILE ARG ALA PRO THR ILE SEQRES 9 B 369 GLU GLN MET LYS ASP VAL TYR ILE VAL GLN ASP LEU MET SEQRES 10 B 369 GLU THR ASP LEU TYR LYS LEU LEU LYS THR GLN HIS LEU SEQRES 11 B 369 SER ASN ASP NEP ILE CYS TYR PHE LEU TYR GLN ILE LEU SEQRES 12 B 369 ARG GLY LEU LYS TYR ILE HIS SER ALA ASN VAL LEU HIS SEQRES 13 B 369 ARG ASP LEU LYS PRO SER ASN LEU LEU LEU ASN THR THR SEQRES 14 B 369 CYS ASP LEU LYS ILE CYS ASP PHE GLY LEU ALA ARG VAL SEQRES 15 B 369 ALA ASP PRO ASP HIS ASP HIS THR GLY PHE LEU THR GLU SEQRES 16 B 369 TYR VAL ALA THR ARG TRP TYR ARG ALA PRO GLU ILE MET SEQRES 17 B 369 LEU ASN SER LYS GLY TYR THR LYS SER ILE ASP ILE TRP SEQRES 18 B 369 SER VAL GLY CYS ILE LEU ALA GLU MET LEU SER ASN ARG SEQRES 19 B 369 PRO ILE PHE PRO GLY LYS HIS TYR LEU ASP GLN LEU ASN SEQRES 20 B 369 HIS ILE LEU GLY ILE LEU GLY SER PRO SER GLN GLU ASP SEQRES 21 B 369 LEU ASN CYS ILE ILE ASN LEU LYS ALA ARG ASN TYR LEU SEQRES 22 B 369 LEU SER LEU PRO HIS LYS ASN LYS VAL PRO TRP ASN ARG SEQRES 23 B 369 LEU PHE PRO ASN ALA ASP SER LYS ALA LEU ASP LEU LEU SEQRES 24 B 369 ASP LYS MET LEU THR PHE ASN PRO HIS LYS ARG ILE GLU SEQRES 25 B 369 VAL GLU GLN ALA LEU ALA HIS PRO TYR LEU GLU GLN TYR SEQRES 26 B 369 TYR ASP PRO SER ASP GLU PRO ILE ALA GLU ALA PRO PHE SEQRES 27 B 369 LYS PHE ASP MET GLU LEU ASP ASP LEU PRO LYS GLU LYS SEQRES 28 B 369 LEU LYS GLU LEU ILE PHE GLU GLU THR ALA ARG PHE GLN SEQRES 29 B 369 PRO GLY TYR ARG SER MODRES 4QP3 NEP A 125 HIS N1-PHOSPHONOHISTIDINE MODRES 4QP3 NEP B 125 HIS N1-PHOSPHONOHISTIDINE HET NEP A 125 14 HET NEP B 125 14 HET 36Q A 401 20 HET 36Q B 401 20 HETNAM NEP N1-PHOSPHONOHISTIDINE HETNAM 36Q (2S)-3-PHENYL-2-(9H-PURIN-6-YLAMINO)PROPAN-1-OL FORMUL 1 NEP 2(C6 H10 N3 O5 P) FORMUL 3 36Q 2(C14 H15 N5 O) FORMUL 5 HOH *162(H2 O) HELIX 1 1 HIS A 61 PHE A 78 1 18 HELIX 2 2 LEU A 112 GLN A 119 1 8 HELIX 3 3 SER A 122 ALA A 143 1 22 HELIX 4 4 LYS A 151 SER A 153 5 3 HELIX 5 5 THR A 190 ARG A 194 5 5 HELIX 6 6 ALA A 195 ASN A 201 1 7 HELIX 7 7 LYS A 207 ASN A 224 1 18 HELIX 8 8 HIS A 232 GLY A 245 1 14 HELIX 9 9 SER A 248 ASN A 253 1 6 HELIX 10 10 PRO A 274 PHE A 279 1 6 HELIX 11 11 ASP A 283 LEU A 294 1 12 HELIX 12 12 GLU A 303 ALA A 309 1 7 HELIX 13 13 HIS A 310 GLU A 314 5 5 HELIX 14 14 ASP A 318 GLU A 322 5 5 HELIX 15 15 PRO A 339 THR A 351 1 13 HELIX 16 16 ALA A 352 GLN A 355 5 4 HELIX 17 17 HIS B 61 PHE B 78 1 18 HELIX 18 18 LEU B 112 LYS B 117 1 6 HELIX 19 19 SER B 122 ALA B 143 1 22 HELIX 20 20 LYS B 151 SER B 153 5 3 HELIX 21 21 THR B 190 ARG B 194 5 5 HELIX 22 22 ALA B 195 LEU B 200 1 6 HELIX 23 23 LYS B 207 LEU B 222 1 16 HELIX 24 24 HIS B 232 GLY B 245 1 14 HELIX 25 25 PRO B 274 PHE B 279 1 6 HELIX 26 26 ASP B 283 LEU B 294 1 12 HELIX 27 27 GLU B 303 ALA B 309 1 7 HELIX 28 28 HIS B 310 GLU B 314 5 5 HELIX 29 29 ASP B 318 GLU B 322 5 5 HELIX 30 30 GLU B 341 THR B 351 1 11 HELIX 31 31 ALA B 352 GLN B 355 5 4 SHEET 1 A 5 TYR A 25 TYR A 30 0 SHEET 2 A 5 GLY A 37 ASP A 44 -1 O TYR A 43 N THR A 26 SHEET 3 A 5 VAL A 49 ILE A 56 -1 O VAL A 51 N ALA A 42 SHEET 4 A 5 VAL A 101 ASP A 106 -1 O VAL A 101 N ILE A 56 SHEET 5 A 5 ASP A 88 ILE A 90 -1 N ASP A 88 O VAL A 104 SHEET 1 B 3 THR A 110 ASP A 111 0 SHEET 2 B 3 LEU A 155 LEU A 157 -1 O LEU A 157 N THR A 110 SHEET 3 B 3 LEU A 163 ILE A 165 -1 O LYS A 164 N LEU A 156 SHEET 1 C 2 VAL A 145 LEU A 146 0 SHEET 2 C 2 ARG A 172 VAL A 173 -1 O ARG A 172 N LEU A 146 SHEET 1 D 3 TYR B 25 THR B 26 0 SHEET 2 D 3 VAL B 39 ASP B 44 -1 O TYR B 43 N THR B 26 SHEET 3 D 3 TYR B 30 GLY B 32 -1 N ILE B 31 O VAL B 39 SHEET 1 E 5 TYR B 25 THR B 26 0 SHEET 2 E 5 VAL B 39 ASP B 44 -1 O TYR B 43 N THR B 26 SHEET 3 E 5 ARG B 50 ILE B 56 -1 O ILE B 53 N CYS B 40 SHEET 4 E 5 VAL B 101 ASP B 106 -1 O ILE B 103 N LYS B 54 SHEET 5 E 5 ASP B 88 ILE B 90 -1 N ASP B 88 O VAL B 104 SHEET 1 F 3 THR B 110 ASP B 111 0 SHEET 2 F 3 LEU B 155 THR B 159 -1 O LEU B 157 N THR B 110 SHEET 3 F 3 ASP B 162 ILE B 165 -1 O LYS B 164 N LEU B 156 SHEET 1 G 2 VAL B 145 LEU B 146 0 SHEET 2 G 2 ARG B 172 VAL B 173 -1 O ARG B 172 N LEU B 146 LINK C ASP A 124 N NEP A 125 1555 1555 1.33 LINK C NEP A 125 N ILE A 126 1555 1555 1.33 LINK C ASP B 124 N NEP B 125 1555 1555 1.33 LINK C NEP B 125 N ILE B 126 1555 1555 1.33 CISPEP 1 GLY A 22 PRO A 23 0 0.32 CISPEP 2 LEU A 264 LEU A 265 0 -0.32 CISPEP 3 VAL B 18 PHE B 19 0 5.66 CISPEP 4 LEU B 267 PRO B 268 0 -9.78 SITE 1 AC1 8 ILE A 31 GLN A 105 ASP A 106 MET A 108 SITE 2 AC1 8 GLU A 109 THR A 110 ASP A 111 LYS A 114 SITE 1 AC2 8 ILE B 31 ASP B 106 MET B 108 GLU B 109 SITE 2 AC2 8 THR B 110 ASP B 111 LYS B 114 LEU B 156 CRYST1 83.083 83.083 277.013 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012036 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012036 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003610 0.00000