HEADER OXIDOREDUCTASE 23-JUN-14 4QPC TITLE CRYSTAL STRUCTURE OF THE HYDROLASE DOMAIN OF 10-FORMYLTETRAHYDROFOLATE TITLE 2 DEHYDROGENASE (Y200A) FROM ZEBRAFISH COMPND MOL_ID: 1; COMPND 2 MOLECULE: 10-FORMYLTETRAHYDROFOLATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-311; COMPND 5 EC: 1.5.1.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: LEOPARD DANIO,ZEBRA DANIO,ZEBRA FISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: ALDH1L1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 10-FORMYLTETRAHYDROFOLATE DEHYDROGENASE, HYDROLASE DOMAIN, CATALYSIS, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.C.LIN,C.J.CHEN,T.F.FU,P.CHUANKHAYAN,T.T.KAO,W.N.CHANG REVDAT 3 08-NOV-23 4QPC 1 REMARK REVDAT 2 18-DEC-19 4QPC 1 JRNL SEQADV REVDAT 1 15-APR-15 4QPC 0 JRNL AUTH C.C.LIN,P.CHUANKHAYAN,W.N.CHANG,T.T.KAO,H.H.GUAN,H.K.FUN, JRNL AUTH 2 A.NAKAGAWA,T.F.FU,C.J.CHEN JRNL TITL STRUCTURES OF THE HYDROLASE DOMAIN OF ZEBRAFISH JRNL TITL 2 10-FORMYLTETRAHYDROFOLATE DEHYDROGENASE AND ITS COMPLEXES JRNL TITL 3 REVEAL A COMPLETE SET OF KEY RESIDUES FOR HYDROLYSIS AND JRNL TITL 4 PRODUCT INHIBITION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 1006 2015 JRNL REFN ESSN 1399-0047 JRNL PMID 25849409 JRNL DOI 10.1107/S1399004715002928 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 27326 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.0018 - 4.0918 0.99 2788 151 0.1753 0.1791 REMARK 3 2 4.0918 - 3.2504 0.92 2454 126 0.1806 0.1997 REMARK 3 3 3.2504 - 2.8402 1.00 2637 152 0.2042 0.2084 REMARK 3 4 2.8402 - 2.5809 1.00 2629 135 0.2006 0.2284 REMARK 3 5 2.5809 - 2.3961 1.00 2615 150 0.2002 0.2269 REMARK 3 6 2.3961 - 2.2549 0.99 2536 143 0.2273 0.3036 REMARK 3 7 2.2549 - 2.1421 0.99 2586 125 0.2501 0.2874 REMARK 3 8 2.1421 - 2.0489 1.00 2596 136 0.2087 0.2184 REMARK 3 9 2.0489 - 1.9700 1.00 2589 132 0.2226 0.2809 REMARK 3 10 1.9700 - 1.9021 0.98 2520 126 0.3274 0.3737 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 30.13 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.94190 REMARK 3 B22 (A**2) : 4.63070 REMARK 3 B33 (A**2) : -0.68870 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2467 REMARK 3 ANGLE : 1.053 3337 REMARK 3 CHIRALITY : 0.067 356 REMARK 3 PLANARITY : 0.005 437 REMARK 3 DIHEDRAL : 15.367 920 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 1:106) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6333 7.8695 21.0329 REMARK 3 T TENSOR REMARK 3 T11: 0.2627 T22: 0.2631 REMARK 3 T33: 0.3574 T12: 0.0371 REMARK 3 T13: -0.0032 T23: 0.1290 REMARK 3 L TENSOR REMARK 3 L11: 1.8315 L22: 2.9320 REMARK 3 L33: 2.0369 L12: 0.8880 REMARK 3 L13: 0.3187 L23: -0.4973 REMARK 3 S TENSOR REMARK 3 S11: 0.0647 S12: -0.2627 S13: -0.5171 REMARK 3 S21: 0.1458 S22: -0.3085 S23: -0.7806 REMARK 3 S31: 0.4187 S32: 0.4299 S33: 0.1063 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 107:184) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7321 27.0667 15.6642 REMARK 3 T TENSOR REMARK 3 T11: 0.1168 T22: 0.1077 REMARK 3 T33: 0.0969 T12: 0.0107 REMARK 3 T13: -0.0049 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 3.1912 L22: 1.7223 REMARK 3 L33: 0.8387 L12: 1.5996 REMARK 3 L13: -0.6271 L23: -0.3251 REMARK 3 S TENSOR REMARK 3 S11: 0.1192 S12: -0.2044 S13: 0.0387 REMARK 3 S21: 0.1561 S22: -0.0393 S23: -0.0133 REMARK 3 S31: -0.0169 S32: 0.0565 S33: -0.0764 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 185:239) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0089 29.0646 7.5944 REMARK 3 T TENSOR REMARK 3 T11: 0.1529 T22: 0.0995 REMARK 3 T33: 0.1422 T12: 0.0331 REMARK 3 T13: 0.0048 T23: -0.0432 REMARK 3 L TENSOR REMARK 3 L11: 4.7538 L22: 1.1891 REMARK 3 L33: 0.9982 L12: 1.5948 REMARK 3 L13: -0.4562 L23: -0.3991 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: 0.2764 S13: -0.3293 REMARK 3 S21: -0.0495 S22: 0.0212 S23: -0.1678 REMARK 3 S31: 0.0609 S32: 0.1518 S33: -0.0184 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 240:270) REMARK 3 ORIGIN FOR THE GROUP (A): 40.2805 43.1637 9.7091 REMARK 3 T TENSOR REMARK 3 T11: 0.2425 T22: 0.1887 REMARK 3 T33: 0.2540 T12: -0.0383 REMARK 3 T13: 0.0388 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 5.3338 L22: 0.1664 REMARK 3 L33: 4.7231 L12: 0.4254 REMARK 3 L13: -0.7945 L23: -0.7830 REMARK 3 S TENSOR REMARK 3 S11: 0.2287 S12: -0.2415 S13: 0.7502 REMARK 3 S21: 0.2383 S22: -0.1012 S23: -0.1720 REMARK 3 S31: -0.6317 S32: 0.3961 S33: -0.0185 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 271:308) REMARK 3 ORIGIN FOR THE GROUP (A): 41.0191 39.0911 13.8231 REMARK 3 T TENSOR REMARK 3 T11: 0.1508 T22: 0.2079 REMARK 3 T33: 0.1214 T12: -0.0043 REMARK 3 T13: 0.0175 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 6.4081 L22: 3.3283 REMARK 3 L33: 6.0687 L12: -0.2710 REMARK 3 L13: 0.8965 L23: -0.7175 REMARK 3 S TENSOR REMARK 3 S11: 0.0662 S12: -0.2725 S13: 0.1196 REMARK 3 S21: 0.2672 S22: -0.0911 S23: -0.2429 REMARK 3 S31: 0.2096 S32: 0.6168 S33: 0.0059 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QPC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000086343. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27430 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4TS4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1~0.2M BIS-TRIS PH 5.5, 25~29%(W/V) REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 52.23000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.97950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.23000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.97950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 53.95900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 690 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 721 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 722 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 309 REMARK 465 GLY A 310 REMARK 465 VAL A 311 REMARK 465 GLU A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 562 O HOH A 650 1.90 REMARK 500 O HOH A 688 O HOH A 700 1.95 REMARK 500 O HOH A 486 O HOH A 740 2.07 REMARK 500 O HOH A 617 O HOH A 726 2.08 REMARK 500 O HOH A 573 O HOH A 678 2.09 REMARK 500 O HOH A 661 O HOH A 666 2.11 REMARK 500 NZ LYS A 205 O HOH A 628 2.11 REMARK 500 OE1 GLU A 195 O HOH A 649 2.15 REMARK 500 O HOH A 644 O HOH A 684 2.15 REMARK 500 OE1 GLU A 207 O HOH A 734 2.17 REMARK 500 O HOH A 515 O HOH A 655 2.18 REMARK 500 O HOH A 607 O HOH A 611 2.18 REMARK 500 O HOH A 645 O HOH A 647 2.18 REMARK 500 O LYS A 308 O HOH A 715 2.19 REMARK 500 O HOH A 610 O HOH A 613 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 724 O HOH A 729 2565 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 9 166.72 70.90 REMARK 500 PRO A 107 48.37 -82.93 REMARK 500 ASP A 138 -164.92 -119.30 REMARK 500 PHE A 167 -60.37 -127.55 REMARK 500 SER A 256 -91.30 -60.48 REMARK 500 SER A 257 -129.34 64.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 251 ASN A 252 -149.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TS4 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN WILD TYPE REMARK 900 RELATED ID: 4TT8 RELATED DB: PDB REMARK 900 THE SAME PROTEIN (WILD TYPE) AND COMPLEX WITH 10-FORMYL-5,8- REMARK 900 DIDEAZAFOLATE REMARK 900 RELATED ID: 4TTS RELATED DB: PDB REMARK 900 THE SAME PROTEIN (Y200A) AND COMPLEX WITH 10-FORMYL-5,8- REMARK 900 DIDEAZAFOLATE REMARK 900 RELATED ID: 4QPD RELATED DB: PDB REMARK 900 THE SAME PROTEIN (WILD TYPE) AND COMPLEX WITH TETRAHYDROFOLATE REMARK 900 RELATED ID: 4QPC RELATED DB: PDB DBREF 4QPC A 1 311 UNP E3NZ06 E3NZ06_DANRE 1 311 SEQADV 4QPC ALA A 200 UNP E3NZ06 TYR 200 ENGINEERED MUTATION SEQADV 4QPC GLU A 312 UNP E3NZ06 EXPRESSION TAG SEQADV 4QPC HIS A 313 UNP E3NZ06 EXPRESSION TAG SEQADV 4QPC HIS A 314 UNP E3NZ06 EXPRESSION TAG SEQADV 4QPC HIS A 315 UNP E3NZ06 EXPRESSION TAG SEQADV 4QPC HIS A 316 UNP E3NZ06 EXPRESSION TAG SEQADV 4QPC HIS A 317 UNP E3NZ06 EXPRESSION TAG SEQADV 4QPC HIS A 318 UNP E3NZ06 EXPRESSION TAG SEQRES 1 A 318 MET LYS ILE ALA VAL ILE GLY GLN SER LEU PHE GLY GLN SEQRES 2 A 318 GLU VAL TYR LYS GLU LEU LYS ASN GLU GLY HIS MET ILE SEQRES 3 A 318 VAL GLY VAL PHE THR ILE PRO ASP LYS ASP GLY LYS VAL SEQRES 4 A 318 ASP PRO LEU ALA ILE GLU ALA GLU LYS ASP GLY VAL PRO SEQRES 5 A 318 VAL PHE LYS PHE PRO ARG TRP ARG LEU LYS GLY LYS ALA SEQRES 6 A 318 ILE THR GLU VAL VAL ASP GLN TYR LYS ALA VAL GLY ALA SEQRES 7 A 318 GLU LEU ASN VAL LEU PRO PHE CYS SER GLN PHE ILE PRO SEQRES 8 A 318 MET GLU VAL ILE ASP HIS PRO LYS HIS GLY SER ILE ILE SEQRES 9 A 318 TYR HIS PRO SER LEU LEU PRO ARG HIS ARG GLY ALA SER SEQRES 10 A 318 ALA ILE ASN TRP THR LEU ILE HIS GLY ASP LYS LYS GLY SEQRES 11 A 318 GLY PHE THR VAL PHE TRP ALA ASP ASP GLY LEU ASP THR SEQRES 12 A 318 GLY PRO ILE LEU LEU GLN ARG GLU CYS ASP VAL GLU PRO SEQRES 13 A 318 ASN ASP ASN VAL ASN SER ILE TYR LYS ARG PHE LEU PHE SEQRES 14 A 318 PRO GLU GLY VAL LYS GLY MET VAL GLU ALA VAL ARG LEU SEQRES 15 A 318 ILE ALA THR GLY LYS ALA PRO ARG ILE LYS GLN PRO GLU SEQRES 16 A 318 GLU GLY ALA THR ALA GLU CYS ILE GLN LYS LYS GLU ASN SEQRES 17 A 318 SER LYS ILE ASP TRP ASN GLN PRO ALA GLU ALA ILE HIS SEQRES 18 A 318 ASN TRP ILE ARG GLY ASN ASP ARG VAL PRO GLY ALA TRP SEQRES 19 A 318 ALA GLU ILE ASP GLY LYS SER VAL SER PHE TYR GLY SER SEQRES 20 A 318 THR LEU LEU GLU ASN ASP HIS PHE SER SER ASN GLY GLN SEQRES 21 A 318 PRO LEU GLU ILE PRO GLY ALA SER ARG ALA ALA LEU VAL SEQRES 22 A 318 THR LYS ASN GLY LEU VAL LEU PHE GLY ASN ASP GLY LYS SEQRES 23 A 318 MET LEU LEU VAL LYS ASN LEU GLN PHE GLU ASP GLY LYS SEQRES 24 A 318 MET ILE PRO GLY SER GLN TYR PHE LYS ALA GLY VAL GLU SEQRES 25 A 318 HIS HIS HIS HIS HIS HIS FORMUL 2 HOH *345(H2 O) HELIX 1 1 GLN A 8 GLU A 22 1 15 HELIX 2 2 ASP A 40 ASP A 49 1 10 HELIX 3 3 ILE A 66 VAL A 76 1 11 HELIX 4 4 PRO A 91 ASP A 96 1 6 HELIX 5 5 SER A 117 HIS A 125 1 9 HELIX 6 6 ASN A 159 PHE A 167 1 9 HELIX 7 7 PHE A 169 THR A 185 1 17 HELIX 8 8 LYS A 206 LYS A 210 5 5 HELIX 9 9 PRO A 216 GLY A 226 1 11 HELIX 10 10 SER A 304 TYR A 306 5 3 SHEET 1 A 7 VAL A 53 PHE A 54 0 SHEET 2 A 7 MET A 25 PHE A 30 1 N VAL A 29 O PHE A 54 SHEET 3 A 7 LYS A 2 ILE A 6 1 N ILE A 3 O MET A 25 SHEET 4 A 7 LEU A 80 LEU A 83 1 O VAL A 82 N ILE A 6 SHEET 5 A 7 SER A 102 HIS A 106 1 O ILE A 103 N LEU A 83 SHEET 6 A 7 LYS A 129 TRP A 136 -1 O THR A 133 N HIS A 106 SHEET 7 A 7 ILE A 146 ASP A 153 -1 O CYS A 152 N GLY A 130 SHEET 1 B 2 ARG A 60 LEU A 61 0 SHEET 2 B 2 LYS A 64 ALA A 65 -1 O LYS A 64 N LEU A 61 SHEET 1 C 6 TRP A 234 ILE A 237 0 SHEET 2 C 6 LYS A 240 LEU A 250 -1 O LYS A 240 N ILE A 237 SHEET 3 C 6 MET A 287 GLN A 294 -1 O LEU A 289 N THR A 248 SHEET 4 C 6 GLY A 277 PHE A 281 -1 N LEU A 278 O VAL A 290 SHEET 5 C 6 ALA A 271 THR A 274 -1 N LEU A 272 O VAL A 279 SHEET 6 C 6 GLN A 260 LEU A 262 -1 N GLN A 260 O VAL A 273 SHEET 1 D 4 TRP A 234 ILE A 237 0 SHEET 2 D 4 LYS A 240 LEU A 250 -1 O LYS A 240 N ILE A 237 SHEET 3 D 4 MET A 287 GLN A 294 -1 O LEU A 289 N THR A 248 SHEET 4 D 4 MET A 300 PRO A 302 -1 O ILE A 301 N LEU A 293 CISPEP 1 LEU A 110 PRO A 111 0 12.48 CISPEP 2 ASP A 228 ARG A 229 0 11.10 CISPEP 3 VAL A 230 PRO A 231 0 2.74 CISPEP 4 HIS A 254 PHE A 255 0 14.32 CISPEP 5 SER A 257 ASN A 258 0 4.69 CRYST1 104.460 53.959 60.877 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009573 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016427 0.00000