HEADER OXIDOREDUCTASE 23-JUN-14 4QPD TITLE CRYSTAL STRUCTURE OF THE HYDROLASE DOMAIN OF 10-FORMYLTETRAHYDROFOLATE TITLE 2 DEHYDROGENASE (WILD-TYPE) COMPLEX WITH TETRAHYDROFOLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 10-FORMYLTETRAHYDROFOLATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-311; COMPND 5 EC: 1.5.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: LEOPARD DANIO,ZEBRA DANIO,ZEBRA FISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: ALDH1L1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 10-FORMYLTETRAHYDROFOLATE DEHYDROGENASE, HYDROLASE DOMAIN, CATALYSIS, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.C.LIN,C.J.CHEN,T.F.FU,P.CHUANKHAYAN,T.T.KAO,W.N.CHANG REVDAT 3 20-MAR-24 4QPD 1 REMARK REVDAT 2 18-DEC-19 4QPD 1 JRNL SEQADV REVDAT 1 15-APR-15 4QPD 0 JRNL AUTH C.C.LIN,P.CHUANKHAYAN,W.N.CHANG,T.T.KAO,H.H.GUAN,H.K.FUN, JRNL AUTH 2 A.NAKAGAWA,T.F.FU,C.J.CHEN JRNL TITL STRUCTURES OF THE HYDROLASE DOMAIN OF ZEBRAFISH JRNL TITL 2 10-FORMYLTETRAHYDROFOLATE DEHYDROGENASE AND ITS COMPLEXES JRNL TITL 3 REVEAL A COMPLETE SET OF KEY RESIDUES FOR HYDROLYSIS AND JRNL TITL 4 PRODUCT INHIBITION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 1006 2015 JRNL REFN ESSN 1399-0047 JRNL PMID 25849409 JRNL DOI 10.1107/S1399004715002928 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 39492 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3759 - 5.0536 0.99 2885 146 0.1838 0.2104 REMARK 3 2 5.0536 - 4.0145 1.00 2775 146 0.1493 0.1906 REMARK 3 3 4.0145 - 3.5080 1.00 2751 138 0.1642 0.1974 REMARK 3 4 3.5080 - 3.1877 1.00 2721 140 0.1896 0.2169 REMARK 3 5 3.1877 - 2.9594 1.00 2711 154 0.1958 0.2658 REMARK 3 6 2.9594 - 2.7851 1.00 2670 154 0.2045 0.2911 REMARK 3 7 2.7851 - 2.6457 1.00 2715 131 0.1941 0.2381 REMARK 3 8 2.6457 - 2.5306 1.00 2684 147 0.2026 0.2672 REMARK 3 9 2.5306 - 2.4332 1.00 2690 141 0.1897 0.2315 REMARK 3 10 2.4332 - 2.3493 1.00 2679 146 0.1923 0.2682 REMARK 3 11 2.3493 - 2.2759 1.00 2641 153 0.2007 0.2362 REMARK 3 12 2.2759 - 2.2108 1.00 2694 144 0.2204 0.2893 REMARK 3 13 2.2108 - 2.1526 0.97 2595 131 0.2152 0.2786 REMARK 3 14 2.1526 - 2.1001 0.86 2295 115 0.2267 0.2771 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5064 REMARK 3 ANGLE : 1.050 6847 REMARK 3 CHIRALITY : 0.037 718 REMARK 3 PLANARITY : 0.004 891 REMARK 3 DIHEDRAL : 15.761 1893 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3370 13.2738 51.4423 REMARK 3 T TENSOR REMARK 3 T11: 0.1821 T22: 0.2459 REMARK 3 T33: 0.3221 T12: -0.0178 REMARK 3 T13: -0.0707 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 1.9740 L22: 1.8819 REMARK 3 L33: 1.9695 L12: -0.0118 REMARK 3 L13: 0.2248 L23: -0.0230 REMARK 3 S TENSOR REMARK 3 S11: -0.1204 S12: -0.1314 S13: 0.4237 REMARK 3 S21: 0.1401 S22: -0.1297 S23: -0.4106 REMARK 3 S31: -0.2307 S32: 0.4018 S33: 0.1864 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2278 14.1478 43.6906 REMARK 3 T TENSOR REMARK 3 T11: 0.1472 T22: 0.1259 REMARK 3 T33: 0.0969 T12: -0.0037 REMARK 3 T13: 0.0052 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 1.4761 L22: 3.3577 REMARK 3 L33: 0.6009 L12: -1.2373 REMARK 3 L13: 0.3138 L23: -0.3227 REMARK 3 S TENSOR REMARK 3 S11: 0.0529 S12: 0.0631 S13: 0.0285 REMARK 3 S21: -0.2628 S22: -0.0031 S23: 0.0328 REMARK 3 S31: -0.0563 S32: 0.0156 S33: -0.0476 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 228 THROUGH 308 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2518 38.8271 43.1933 REMARK 3 T TENSOR REMARK 3 T11: 0.2865 T22: 0.1760 REMARK 3 T33: 0.2192 T12: 0.0224 REMARK 3 T13: -0.0191 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.7627 L22: 5.9354 REMARK 3 L33: 5.5831 L12: -0.9165 REMARK 3 L13: 0.1135 L23: 0.6667 REMARK 3 S TENSOR REMARK 3 S11: -0.0763 S12: -0.0329 S13: 0.2391 REMARK 3 S21: 0.1195 S22: -0.1037 S23: 0.2152 REMARK 3 S31: -0.6850 S32: -0.3125 S33: 0.1124 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.2702 31.7908 3.6810 REMARK 3 T TENSOR REMARK 3 T11: 0.2229 T22: 0.2561 REMARK 3 T33: 0.2481 T12: 0.0455 REMARK 3 T13: 0.0864 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 2.9183 L22: 2.4913 REMARK 3 L33: 2.7956 L12: 0.0210 REMARK 3 L13: -0.0359 L23: 0.5614 REMARK 3 S TENSOR REMARK 3 S11: -0.0338 S12: 0.0930 S13: -0.4590 REMARK 3 S21: -0.2561 S22: -0.0617 S23: -0.3421 REMARK 3 S31: 0.4568 S32: 0.3435 S33: 0.1156 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 60 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.8132 37.9154 15.3190 REMARK 3 T TENSOR REMARK 3 T11: 0.1423 T22: 0.3894 REMARK 3 T33: 0.2983 T12: -0.0334 REMARK 3 T13: -0.0173 T23: 0.0940 REMARK 3 L TENSOR REMARK 3 L11: 1.9982 L22: 1.0372 REMARK 3 L33: 1.0791 L12: -0.0553 REMARK 3 L13: -0.0785 L23: 0.2547 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: -0.3276 S13: -0.1981 REMARK 3 S21: 0.0994 S22: -0.1928 S23: -0.4609 REMARK 3 S31: 0.1108 S32: 0.6024 S33: 0.1416 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6498 34.8980 16.3705 REMARK 3 T TENSOR REMARK 3 T11: 0.1241 T22: 0.1420 REMARK 3 T33: 0.1174 T12: -0.0224 REMARK 3 T13: -0.0116 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.2028 L22: 2.3000 REMARK 3 L33: 0.7086 L12: 0.7653 REMARK 3 L13: -0.2654 L23: -0.4874 REMARK 3 S TENSOR REMARK 3 S11: 0.0937 S12: -0.0717 S13: -0.0227 REMARK 3 S21: 0.0472 S22: -0.0423 S23: 0.0548 REMARK 3 S31: 0.0232 S32: 0.0508 S33: -0.0444 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 168 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.7290 42.1914 4.8505 REMARK 3 T TENSOR REMARK 3 T11: 0.1999 T22: 0.1423 REMARK 3 T33: 0.1361 T12: -0.0112 REMARK 3 T13: 0.0064 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 4.7039 L22: 8.8282 REMARK 3 L33: 0.8985 L12: 5.7279 REMARK 3 L13: 0.2587 L23: 0.4909 REMARK 3 S TENSOR REMARK 3 S11: -0.0955 S12: 0.2757 S13: 0.3043 REMARK 3 S21: -0.2710 S22: 0.2650 S23: 0.3806 REMARK 3 S31: -0.0818 S32: -0.0567 S33: -0.1525 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 185 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5786 25.2885 22.2650 REMARK 3 T TENSOR REMARK 3 T11: 0.1716 T22: 0.1791 REMARK 3 T33: 0.1430 T12: -0.0006 REMARK 3 T13: -0.0239 T23: 0.0403 REMARK 3 L TENSOR REMARK 3 L11: 1.5319 L22: 2.9751 REMARK 3 L33: 0.8545 L12: 1.1011 REMARK 3 L13: -0.6636 L23: -0.5958 REMARK 3 S TENSOR REMARK 3 S11: 0.0239 S12: -0.2463 S13: -0.2356 REMARK 3 S21: 0.2393 S22: -0.1015 S23: -0.2005 REMARK 3 S31: 0.1292 S32: 0.0785 S33: 0.0777 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 240 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4186 9.7270 20.6594 REMARK 3 T TENSOR REMARK 3 T11: 0.2439 T22: 0.2695 REMARK 3 T33: 0.3585 T12: -0.0531 REMARK 3 T13: -0.0048 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.5513 L22: 4.6598 REMARK 3 L33: 4.1494 L12: 1.4689 REMARK 3 L13: -1.0302 L23: -1.4511 REMARK 3 S TENSOR REMARK 3 S11: -0.1371 S12: 0.1638 S13: -0.2109 REMARK 3 S21: -0.2639 S22: 0.1163 S23: 0.6438 REMARK 3 S31: 0.4597 S32: -0.6199 S33: 0.0740 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 271 THROUGH 308 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0026 8.4112 16.8103 REMARK 3 T TENSOR REMARK 3 T11: 0.2987 T22: 0.1985 REMARK 3 T33: 0.2449 T12: -0.0242 REMARK 3 T13: 0.0236 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 3.4205 L22: 4.3425 REMARK 3 L33: 4.9211 L12: -0.1921 REMARK 3 L13: -0.5278 L23: 0.6911 REMARK 3 S TENSOR REMARK 3 S11: 0.0146 S12: 0.3120 S13: -0.3190 REMARK 3 S21: -0.5978 S22: -0.0884 S23: 0.0353 REMARK 3 S31: 0.5082 S32: -0.0861 S33: 0.0832 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QPD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000086344. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL12B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39592 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1~0.2M BIS-TRIS, PH 5.5, 25~29%(W/V) REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.25050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.25950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.20750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.25950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.25050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.20750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 309 REMARK 465 GLY A 310 REMARK 465 VAL A 311 REMARK 465 GLU A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 ALA B 309 REMARK 465 GLY B 310 REMARK 465 VAL B 311 REMARK 465 GLU B 312 REMARK 465 HIS B 313 REMARK 465 HIS B 314 REMARK 465 HIS B 315 REMARK 465 HIS B 316 REMARK 465 HIS B 317 REMARK 465 HIS B 318 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 288 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 9 178.55 69.36 REMARK 500 THR A 31 -168.84 -124.62 REMARK 500 ASP A 138 -167.48 -126.41 REMARK 500 PHE A 167 -59.21 -126.95 REMARK 500 ASN A 214 56.16 -91.90 REMARK 500 SER A 257 15.04 55.49 REMARK 500 PRO A 265 105.33 -45.99 REMARK 500 ASP A 297 72.01 52.21 REMARK 500 SER B 9 179.02 74.52 REMARK 500 THR B 31 -166.82 -126.69 REMARK 500 PRO B 107 45.20 -80.13 REMARK 500 ASP B 138 -165.15 -122.79 REMARK 500 PHE B 167 -54.58 -133.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THG B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TS4 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN WILD TYPE REMARK 900 RELATED ID: 4TT8 RELATED DB: PDB REMARK 900 THE SAME PROTEIN (WILD TYPE) AND COMPLEX WITH 10-FORMYL-5,8- REMARK 900 DIDEAZAFOLATE REMARK 900 RELATED ID: 4TTS RELATED DB: PDB REMARK 900 THE SAME PROTEIN (Y200A) AND COMPLEX WITH 10-FORMYL-5,8- REMARK 900 DIDEAZAFOLATE REMARK 900 RELATED ID: 4QPC RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN MUTANT TYPE (Y200A) REMARK 900 RELATED ID: 4R8V RELATED DB: PDB DBREF 4QPD A 1 311 UNP E3NZ06 E3NZ06_DANRE 1 311 DBREF 4QPD B 1 311 UNP E3NZ06 E3NZ06_DANRE 1 311 SEQADV 4QPD GLU A 312 UNP E3NZ06 EXPRESSION TAG SEQADV 4QPD HIS A 313 UNP E3NZ06 EXPRESSION TAG SEQADV 4QPD HIS A 314 UNP E3NZ06 EXPRESSION TAG SEQADV 4QPD HIS A 315 UNP E3NZ06 EXPRESSION TAG SEQADV 4QPD HIS A 316 UNP E3NZ06 EXPRESSION TAG SEQADV 4QPD HIS A 317 UNP E3NZ06 EXPRESSION TAG SEQADV 4QPD HIS A 318 UNP E3NZ06 EXPRESSION TAG SEQADV 4QPD GLU B 312 UNP E3NZ06 EXPRESSION TAG SEQADV 4QPD HIS B 313 UNP E3NZ06 EXPRESSION TAG SEQADV 4QPD HIS B 314 UNP E3NZ06 EXPRESSION TAG SEQADV 4QPD HIS B 315 UNP E3NZ06 EXPRESSION TAG SEQADV 4QPD HIS B 316 UNP E3NZ06 EXPRESSION TAG SEQADV 4QPD HIS B 317 UNP E3NZ06 EXPRESSION TAG SEQADV 4QPD HIS B 318 UNP E3NZ06 EXPRESSION TAG SEQRES 1 A 318 MET LYS ILE ALA VAL ILE GLY GLN SER LEU PHE GLY GLN SEQRES 2 A 318 GLU VAL TYR LYS GLU LEU LYS ASN GLU GLY HIS MET ILE SEQRES 3 A 318 VAL GLY VAL PHE THR ILE PRO ASP LYS ASP GLY LYS VAL SEQRES 4 A 318 ASP PRO LEU ALA ILE GLU ALA GLU LYS ASP GLY VAL PRO SEQRES 5 A 318 VAL PHE LYS PHE PRO ARG TRP ARG LEU LYS GLY LYS ALA SEQRES 6 A 318 ILE THR GLU VAL VAL ASP GLN TYR LYS ALA VAL GLY ALA SEQRES 7 A 318 GLU LEU ASN VAL LEU PRO PHE CYS SER GLN PHE ILE PRO SEQRES 8 A 318 MET GLU VAL ILE ASP HIS PRO LYS HIS GLY SER ILE ILE SEQRES 9 A 318 TYR HIS PRO SER LEU LEU PRO ARG HIS ARG GLY ALA SER SEQRES 10 A 318 ALA ILE ASN TRP THR LEU ILE HIS GLY ASP LYS LYS GLY SEQRES 11 A 318 GLY PHE THR VAL PHE TRP ALA ASP ASP GLY LEU ASP THR SEQRES 12 A 318 GLY PRO ILE LEU LEU GLN ARG GLU CYS ASP VAL GLU PRO SEQRES 13 A 318 ASN ASP ASN VAL ASN SER ILE TYR LYS ARG PHE LEU PHE SEQRES 14 A 318 PRO GLU GLY VAL LYS GLY MET VAL GLU ALA VAL ARG LEU SEQRES 15 A 318 ILE ALA THR GLY LYS ALA PRO ARG ILE LYS GLN PRO GLU SEQRES 16 A 318 GLU GLY ALA THR TYR GLU CYS ILE GLN LYS LYS GLU ASN SEQRES 17 A 318 SER LYS ILE ASP TRP ASN GLN PRO ALA GLU ALA ILE HIS SEQRES 18 A 318 ASN TRP ILE ARG GLY ASN ASP ARG VAL PRO GLY ALA TRP SEQRES 19 A 318 ALA GLU ILE ASP GLY LYS SER VAL SER PHE TYR GLY SER SEQRES 20 A 318 THR LEU LEU GLU ASN ASP HIS PHE SER SER ASN GLY GLN SEQRES 21 A 318 PRO LEU GLU ILE PRO GLY ALA SER ARG ALA ALA LEU VAL SEQRES 22 A 318 THR LYS ASN GLY LEU VAL LEU PHE GLY ASN ASP GLY LYS SEQRES 23 A 318 MET LEU LEU VAL LYS ASN LEU GLN PHE GLU ASP GLY LYS SEQRES 24 A 318 MET ILE PRO GLY SER GLN TYR PHE LYS ALA GLY VAL GLU SEQRES 25 A 318 HIS HIS HIS HIS HIS HIS SEQRES 1 B 318 MET LYS ILE ALA VAL ILE GLY GLN SER LEU PHE GLY GLN SEQRES 2 B 318 GLU VAL TYR LYS GLU LEU LYS ASN GLU GLY HIS MET ILE SEQRES 3 B 318 VAL GLY VAL PHE THR ILE PRO ASP LYS ASP GLY LYS VAL SEQRES 4 B 318 ASP PRO LEU ALA ILE GLU ALA GLU LYS ASP GLY VAL PRO SEQRES 5 B 318 VAL PHE LYS PHE PRO ARG TRP ARG LEU LYS GLY LYS ALA SEQRES 6 B 318 ILE THR GLU VAL VAL ASP GLN TYR LYS ALA VAL GLY ALA SEQRES 7 B 318 GLU LEU ASN VAL LEU PRO PHE CYS SER GLN PHE ILE PRO SEQRES 8 B 318 MET GLU VAL ILE ASP HIS PRO LYS HIS GLY SER ILE ILE SEQRES 9 B 318 TYR HIS PRO SER LEU LEU PRO ARG HIS ARG GLY ALA SER SEQRES 10 B 318 ALA ILE ASN TRP THR LEU ILE HIS GLY ASP LYS LYS GLY SEQRES 11 B 318 GLY PHE THR VAL PHE TRP ALA ASP ASP GLY LEU ASP THR SEQRES 12 B 318 GLY PRO ILE LEU LEU GLN ARG GLU CYS ASP VAL GLU PRO SEQRES 13 B 318 ASN ASP ASN VAL ASN SER ILE TYR LYS ARG PHE LEU PHE SEQRES 14 B 318 PRO GLU GLY VAL LYS GLY MET VAL GLU ALA VAL ARG LEU SEQRES 15 B 318 ILE ALA THR GLY LYS ALA PRO ARG ILE LYS GLN PRO GLU SEQRES 16 B 318 GLU GLY ALA THR TYR GLU CYS ILE GLN LYS LYS GLU ASN SEQRES 17 B 318 SER LYS ILE ASP TRP ASN GLN PRO ALA GLU ALA ILE HIS SEQRES 18 B 318 ASN TRP ILE ARG GLY ASN ASP ARG VAL PRO GLY ALA TRP SEQRES 19 B 318 ALA GLU ILE ASP GLY LYS SER VAL SER PHE TYR GLY SER SEQRES 20 B 318 THR LEU LEU GLU ASN ASP HIS PHE SER SER ASN GLY GLN SEQRES 21 B 318 PRO LEU GLU ILE PRO GLY ALA SER ARG ALA ALA LEU VAL SEQRES 22 B 318 THR LYS ASN GLY LEU VAL LEU PHE GLY ASN ASP GLY LYS SEQRES 23 B 318 MET LEU LEU VAL LYS ASN LEU GLN PHE GLU ASP GLY LYS SEQRES 24 B 318 MET ILE PRO GLY SER GLN TYR PHE LYS ALA GLY VAL GLU SEQRES 25 B 318 HIS HIS HIS HIS HIS HIS HET PEG A 401 7 HET THG A 402 32 HET PEG B 401 7 HET THG B 402 32 HET THG B 403 32 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM THG (6S)-5,6,7,8-TETRAHYDROFOLATE FORMUL 3 PEG 2(C4 H10 O3) FORMUL 4 THG 3(C19 H23 N7 O6) FORMUL 8 HOH *432(H2 O) HELIX 1 1 GLN A 8 ASN A 21 1 14 HELIX 2 2 ASP A 40 GLY A 50 1 11 HELIX 3 3 ILE A 66 ALA A 75 1 10 HELIX 4 4 PRO A 91 ASP A 96 1 6 HELIX 5 5 SER A 117 HIS A 125 1 9 HELIX 6 6 ASN A 159 PHE A 167 1 9 HELIX 7 7 PHE A 167 THR A 185 1 19 HELIX 8 8 PRO A 216 GLY A 226 1 11 HELIX 9 9 SER A 304 TYR A 306 5 3 HELIX 10 10 GLN B 8 GLU B 22 1 15 HELIX 11 11 ASP B 40 ASP B 49 1 10 HELIX 12 12 ILE B 66 ALA B 75 1 10 HELIX 13 13 PRO B 91 ASP B 96 1 6 HELIX 14 14 SER B 117 HIS B 125 1 9 HELIX 15 15 ASN B 159 PHE B 167 1 9 HELIX 16 16 PHE B 167 THR B 185 1 19 HELIX 17 17 LYS B 206 LYS B 210 5 5 HELIX 18 18 PRO B 216 GLY B 226 1 11 HELIX 19 19 GLU B 296 GLY B 298 5 3 HELIX 20 20 SER B 304 TYR B 306 5 3 SHEET 1 A 7 VAL A 53 PHE A 54 0 SHEET 2 A 7 MET A 25 PHE A 30 1 N VAL A 29 O PHE A 54 SHEET 3 A 7 LYS A 2 ILE A 6 1 N ILE A 3 O MET A 25 SHEET 4 A 7 LEU A 80 LEU A 83 1 O VAL A 82 N ILE A 6 SHEET 5 A 7 SER A 102 HIS A 106 1 O ILE A 103 N LEU A 83 SHEET 6 A 7 LYS A 129 TRP A 136 -1 O THR A 133 N HIS A 106 SHEET 7 A 7 ILE A 146 ASP A 153 -1 O LEU A 147 N VAL A 134 SHEET 1 B 6 ALA A 233 ILE A 237 0 SHEET 2 B 6 LYS A 240 LEU A 250 -1 O LYS A 240 N ILE A 237 SHEET 3 B 6 MET A 287 PHE A 295 -1 O LEU A 289 N THR A 248 SHEET 4 B 6 GLY A 277 PHE A 281 -1 N LEU A 278 O VAL A 290 SHEET 5 B 6 ALA A 271 THR A 274 -1 N LEU A 272 O VAL A 279 SHEET 6 B 6 GLN A 260 LEU A 262 -1 N GLN A 260 O VAL A 273 SHEET 1 C 4 ALA A 233 ILE A 237 0 SHEET 2 C 4 LYS A 240 LEU A 250 -1 O LYS A 240 N ILE A 237 SHEET 3 C 4 MET A 287 PHE A 295 -1 O LEU A 289 N THR A 248 SHEET 4 C 4 ILE A 301 PRO A 302 -1 O ILE A 301 N LEU A 293 SHEET 1 D 7 VAL B 53 PHE B 54 0 SHEET 2 D 7 MET B 25 PHE B 30 1 N VAL B 29 O PHE B 54 SHEET 3 D 7 LYS B 2 ILE B 6 1 N ILE B 3 O MET B 25 SHEET 4 D 7 LEU B 80 LEU B 83 1 O VAL B 82 N ILE B 6 SHEET 5 D 7 SER B 102 HIS B 106 1 O ILE B 103 N ASN B 81 SHEET 6 D 7 LYS B 129 TRP B 136 -1 O THR B 133 N HIS B 106 SHEET 7 D 7 ILE B 146 ASP B 153 -1 O LEU B 148 N VAL B 134 SHEET 1 E 2 ARG B 60 LEU B 61 0 SHEET 2 E 2 LYS B 64 ALA B 65 -1 O LYS B 64 N LEU B 61 SHEET 1 F 6 TRP B 234 ILE B 237 0 SHEET 2 F 6 LYS B 240 LEU B 250 -1 O LYS B 240 N ILE B 237 SHEET 3 F 6 MET B 287 GLN B 294 -1 O LEU B 289 N THR B 248 SHEET 4 F 6 GLY B 277 PHE B 281 -1 N LEU B 280 O LEU B 288 SHEET 5 F 6 ALA B 271 THR B 274 -1 N LEU B 272 O VAL B 279 SHEET 6 F 6 GLN B 260 LEU B 262 -1 N GLN B 260 O VAL B 273 SHEET 1 G 4 TRP B 234 ILE B 237 0 SHEET 2 G 4 LYS B 240 LEU B 250 -1 O LYS B 240 N ILE B 237 SHEET 3 G 4 MET B 287 GLN B 294 -1 O LEU B 289 N THR B 248 SHEET 4 G 4 MET B 300 PRO B 302 -1 O ILE B 301 N LEU B 293 CISPEP 1 LEU A 110 PRO A 111 0 10.40 CISPEP 2 ASP A 228 ARG A 229 0 11.68 CISPEP 3 VAL A 230 PRO A 231 0 3.24 CISPEP 4 ASN A 252 ASP A 253 0 9.03 CISPEP 5 HIS A 254 PHE A 255 0 -2.59 CISPEP 6 PHE A 255 SER A 256 0 4.27 CISPEP 7 LEU B 110 PRO B 111 0 12.53 CISPEP 8 ASP B 228 ARG B 229 0 6.30 CISPEP 9 VAL B 230 PRO B 231 0 2.29 CISPEP 10 ASN B 252 ASP B 253 0 3.55 CISPEP 11 HIS B 254 PHE B 255 0 9.46 CISPEP 12 SER B 256 SER B 257 0 6.76 SITE 1 AC1 2 PHE A 85 TYR A 164 SITE 1 AC2 20 CYS A 86 GLN A 88 PHE A 89 ILE A 90 SITE 2 AC2 20 ILE A 95 ILE A 104 GLY A 115 ALA A 116 SITE 3 AC2 20 ASP A 138 GLY A 140 LEU A 141 ASP A 142 SITE 4 AC2 20 TYR A 200 LYS A 205 HOH A 502 HOH A 599 SITE 5 AC2 20 HOH A 630 ASN B 283 HOH B 646 HOH B 689 SITE 1 AC3 3 PHE B 85 TYR B 164 HOH B 638 SITE 1 AC4 13 ARG A 114 TYR A 200 SER B 257 ASN B 258 SITE 2 AC4 13 GLY B 259 SER B 268 ARG B 269 LEU B 272 SITE 3 AC4 13 PHE B 281 GLY B 282 GLY B 285 HOH B 653 SITE 4 AC4 13 HOH B 654 SITE 1 AC5 20 CYS B 86 SER B 87 GLN B 88 PHE B 89 SITE 2 AC5 20 ILE B 90 ILE B 95 ILE B 104 ASP B 138 SITE 3 AC5 20 GLY B 140 LEU B 141 ASP B 142 TYR B 200 SITE 4 AC5 20 ILE B 203 HOH B 619 HOH B 625 HOH B 659 SITE 5 AC5 20 HOH B 668 HOH B 669 HOH B 673 HOH B 690 CRYST1 54.501 100.415 122.519 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018348 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009959 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008162 0.00000