HEADER TRANSCRIPTION 24-JUN-14 4QPO TITLE MECHANISTIC BASIS OF PLASMID-SPECIFIC DNA BINDING OF THE F PLASMID TITLE 2 REGULATORY PROTEIN, TRAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: RELAXOSOME PROTEIN TRAM; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: TRAM, ECOK12F071; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RHH DOMAIN, DNA BINDING, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.PENG,J.LU,J.WONG,R.A.EDWARDS,L.S.FROST,J.N.M.GLOVER REVDAT 4 28-FEB-24 4QPO 1 REMARK REVDAT 3 17-DEC-14 4QPO 1 JRNL REVDAT 2 22-OCT-14 4QPO 1 JRNL REVDAT 1 03-SEP-14 4QPO 0 JRNL AUTH Y.PENG,J.LU,J.J.WONG,R.A.EDWARDS,L.S.FROST,J.N.MARK GLOVER JRNL TITL MECHANISTIC BASIS OF PLASMID-SPECIFIC DNA BINDING OF THE F JRNL TITL 2 PLASMID REGULATORY PROTEIN, TRAM. JRNL REF J.MOL.BIOL. V. 426 3783 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 25284757 JRNL DOI 10.1016/J.JMB.2014.09.018 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.3_1479 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 18416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9524 - 3.8236 0.99 2461 134 0.1680 0.2041 REMARK 3 2 3.8236 - 3.0354 1.00 2502 135 0.1914 0.2470 REMARK 3 3 3.0354 - 2.6518 1.00 2497 140 0.2039 0.2241 REMARK 3 4 2.6518 - 2.4094 1.00 2498 127 0.2171 0.2902 REMARK 3 5 2.4094 - 2.2367 1.00 2523 126 0.2066 0.2364 REMARK 3 6 2.2367 - 2.1049 1.00 2498 122 0.2176 0.2115 REMARK 3 7 2.1049 - 1.9995 1.00 2491 162 0.2549 0.2740 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1626 REMARK 3 ANGLE : 1.082 2187 REMARK 3 CHIRALITY : 0.050 253 REMARK 3 PLANARITY : 0.004 280 REMARK 3 DIHEDRAL : 13.243 597 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5134 24.8075 15.9993 REMARK 3 T TENSOR REMARK 3 T11: 0.3539 T22: 0.4616 REMARK 3 T33: 0.4115 T12: -0.0107 REMARK 3 T13: 0.0240 T23: 0.0688 REMARK 3 L TENSOR REMARK 3 L11: 5.8290 L22: 2.3306 REMARK 3 L33: 3.4633 L12: 2.6929 REMARK 3 L13: -2.5355 L23: -1.6585 REMARK 3 S TENSOR REMARK 3 S11: 0.4108 S12: 0.7793 S13: 0.8793 REMARK 3 S21: -0.2929 S22: 0.1919 S23: -0.0562 REMARK 3 S31: -0.2420 S32: 0.0517 S33: -0.5946 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3553 11.6370 7.1208 REMARK 3 T TENSOR REMARK 3 T11: 0.9312 T22: 1.0941 REMARK 3 T33: 0.7240 T12: 0.2011 REMARK 3 T13: 0.1587 T23: -0.1649 REMARK 3 L TENSOR REMARK 3 L11: 4.6329 L22: 7.8017 REMARK 3 L33: 4.5027 L12: 0.3950 REMARK 3 L13: 0.2820 L23: 2.1636 REMARK 3 S TENSOR REMARK 3 S11: -0.3627 S12: 0.5498 S13: -1.4357 REMARK 3 S21: -1.4924 S22: -0.1486 S23: 0.2276 REMARK 3 S31: 0.5801 S32: 0.2104 S33: 0.3683 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5241 4.2520 7.8990 REMARK 3 T TENSOR REMARK 3 T11: 0.9221 T22: 1.2026 REMARK 3 T33: 1.5864 T12: -0.0013 REMARK 3 T13: 0.0765 T23: -0.6250 REMARK 3 L TENSOR REMARK 3 L11: 0.8253 L22: 3.2865 REMARK 3 L33: 0.9455 L12: 0.7169 REMARK 3 L13: 0.1529 L23: -1.4321 REMARK 3 S TENSOR REMARK 3 S11: -1.4943 S12: -0.6645 S13: -2.7306 REMARK 3 S21: -0.8554 S22: 0.3217 S23: 0.8974 REMARK 3 S31: 0.8886 S32: -1.6965 S33: 1.3783 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6329 14.0775 23.2569 REMARK 3 T TENSOR REMARK 3 T11: 0.2728 T22: 0.3881 REMARK 3 T33: 0.4592 T12: 0.1156 REMARK 3 T13: -0.0283 T23: -0.1287 REMARK 3 L TENSOR REMARK 3 L11: 6.2423 L22: 7.3946 REMARK 3 L33: 6.8611 L12: -1.9743 REMARK 3 L13: -1.5822 L23: -1.9161 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: 0.0201 S13: -1.0993 REMARK 3 S21: 0.2865 S22: 0.1991 S23: 0.2257 REMARK 3 S31: 0.9099 S32: -0.5201 S33: -0.1039 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.4077 3.3339 31.4725 REMARK 3 T TENSOR REMARK 3 T11: 0.2839 T22: 0.5280 REMARK 3 T33: 0.2631 T12: 0.0322 REMARK 3 T13: -0.0205 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 1.9863 L22: 2.1140 REMARK 3 L33: 6.9469 L12: 1.5943 REMARK 3 L13: -2.1226 L23: -1.2397 REMARK 3 S TENSOR REMARK 3 S11: -0.0066 S12: 0.0099 S13: 0.1915 REMARK 3 S21: 0.0199 S22: 0.1224 S23: -0.1529 REMARK 3 S31: 0.1687 S32: 0.8419 S33: -0.0368 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6005 -5.8451 30.9793 REMARK 3 T TENSOR REMARK 3 T11: 0.2195 T22: 0.2947 REMARK 3 T33: 0.3108 T12: 0.0049 REMARK 3 T13: 0.0215 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 6.6299 L22: 6.3971 REMARK 3 L33: 9.5149 L12: 3.9807 REMARK 3 L13: 3.5162 L23: 3.9166 REMARK 3 S TENSOR REMARK 3 S11: -0.2266 S12: -0.6240 S13: 0.1680 REMARK 3 S21: 0.0594 S22: -0.2264 S23: 0.3823 REMARK 3 S31: 0.5166 S32: -0.2554 S33: 0.3610 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6909 -12.1835 21.1898 REMARK 3 T TENSOR REMARK 3 T11: 0.5974 T22: 0.3065 REMARK 3 T33: 0.3487 T12: -0.0036 REMARK 3 T13: 0.0198 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 8.5747 L22: 3.5115 REMARK 3 L33: 5.4835 L12: 3.8103 REMARK 3 L13: 1.5637 L23: -0.3732 REMARK 3 S TENSOR REMARK 3 S11: 0.1406 S12: 0.0588 S13: -0.4624 REMARK 3 S21: -0.6340 S22: 0.0731 S23: -0.0076 REMARK 3 S31: 0.8455 S32: 0.0367 S33: -0.0885 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 35 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.5605 7.2329 23.8252 REMARK 3 T TENSOR REMARK 3 T11: 0.2198 T22: 0.3030 REMARK 3 T33: 0.3001 T12: 0.0541 REMARK 3 T13: -0.0063 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 5.6638 L22: 7.5288 REMARK 3 L33: 4.6070 L12: -1.8524 REMARK 3 L13: -0.4901 L23: 0.5380 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: 0.0691 S13: 0.6877 REMARK 3 S21: -0.6245 S22: -0.2612 S23: -0.0459 REMARK 3 S31: -0.1610 S32: -0.2366 S33: 0.1753 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 2 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0234 21.4337 16.1919 REMARK 3 T TENSOR REMARK 3 T11: 0.3177 T22: 0.8213 REMARK 3 T33: 0.5666 T12: -0.2356 REMARK 3 T13: -0.1311 T23: 0.2144 REMARK 3 L TENSOR REMARK 3 L11: 3.8980 L22: 3.8391 REMARK 3 L33: 4.5945 L12: -0.3825 REMARK 3 L13: -3.1894 L23: -1.4462 REMARK 3 S TENSOR REMARK 3 S11: 0.6531 S12: 2.0918 S13: 0.5257 REMARK 3 S21: -0.7801 S22: 0.2519 S23: 0.7831 REMARK 3 S31: -0.2927 S32: 0.7121 S33: -0.4945 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 10 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0944 26.9498 30.8603 REMARK 3 T TENSOR REMARK 3 T11: 0.3350 T22: 0.3958 REMARK 3 T33: 0.3546 T12: 0.0754 REMARK 3 T13: 0.0213 T23: -0.0352 REMARK 3 L TENSOR REMARK 3 L11: 6.3359 L22: 6.0531 REMARK 3 L33: 4.4878 L12: 1.2905 REMARK 3 L13: 2.1497 L23: 0.9611 REMARK 3 S TENSOR REMARK 3 S11: -0.0590 S12: -0.3405 S13: 0.8707 REMARK 3 S21: 0.3043 S22: -0.0799 S23: 0.6246 REMARK 3 S31: -0.4961 S32: -0.3658 S33: 0.0760 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 35 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7899 16.2702 18.9839 REMARK 3 T TENSOR REMARK 3 T11: 0.4013 T22: 0.4984 REMARK 3 T33: 0.3186 T12: 0.0892 REMARK 3 T13: 0.0244 T23: -0.0641 REMARK 3 L TENSOR REMARK 3 L11: 5.2485 L22: 9.1004 REMARK 3 L33: 5.0098 L12: -2.4616 REMARK 3 L13: -1.0556 L23: 0.5667 REMARK 3 S TENSOR REMARK 3 S11: 0.1990 S12: 0.8931 S13: -0.4080 REMARK 3 S21: -1.1221 S22: -0.4014 S23: -0.4584 REMARK 3 S31: 0.3400 S32: -0.0436 S33: 0.1959 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 2 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.8230 1.0163 27.0980 REMARK 3 T TENSOR REMARK 3 T11: 0.3962 T22: 0.4438 REMARK 3 T33: 0.3067 T12: 0.0945 REMARK 3 T13: -0.0058 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.3523 L22: 0.5396 REMARK 3 L33: 5.4005 L12: 0.2270 REMARK 3 L13: -1.1101 L23: 0.0937 REMARK 3 S TENSOR REMARK 3 S11: -0.1245 S12: -0.2117 S13: -0.0786 REMARK 3 S21: -0.1997 S22: 0.0310 S23: -0.2520 REMARK 3 S31: 0.5583 S32: 0.3719 S33: 0.1027 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 10 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.5808 18.3596 24.7116 REMARK 3 T TENSOR REMARK 3 T11: 0.4517 T22: 0.4207 REMARK 3 T33: 0.4057 T12: 0.0032 REMARK 3 T13: 0.0734 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.8299 L22: 3.9045 REMARK 3 L33: 8.3084 L12: 0.0055 REMARK 3 L13: 0.3924 L23: 5.4086 REMARK 3 S TENSOR REMARK 3 S11: 0.1679 S12: 0.3948 S13: 0.2386 REMARK 3 S21: -1.0952 S22: 0.1574 S23: -1.2210 REMARK 3 S31: -1.0077 S32: 0.0009 S33: -0.2248 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 27 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.3336 11.2054 31.6606 REMARK 3 T TENSOR REMARK 3 T11: 0.2533 T22: 0.2928 REMARK 3 T33: 0.2423 T12: 0.0641 REMARK 3 T13: 0.0199 T23: -0.0607 REMARK 3 L TENSOR REMARK 3 L11: 2.4877 L22: 6.1539 REMARK 3 L33: 1.9406 L12: -0.1473 REMARK 3 L13: -0.0428 L23: 0.4638 REMARK 3 S TENSOR REMARK 3 S11: 0.0816 S12: -0.6424 S13: -0.0174 REMARK 3 S21: -0.0077 S22: -0.1268 S23: -0.1958 REMARK 3 S31: -0.0674 S32: -0.1088 S33: 0.0304 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QPO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000086355. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07808 REMARK 200 MONOCHROMATOR : UNKNOWN REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18422 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M AMMONIUM PHOSPHATE DIBASIC, 100 MM REMARK 280 SODIUM CITRATE, PH 5.5 AND 200 MM NACL., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.84100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.39452 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.23767 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 57.84100 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 33.39452 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 18.23767 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 57.84100 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 33.39452 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 18.23767 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.78903 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 36.47533 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 66.78903 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 36.47533 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 66.78903 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 36.47533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN B 53 REMARK 465 MET B 54 REMARK 465 MET D 54 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 26 CG CD OE1 OE2 REMARK 470 ARG A 29 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 ASP A 32 CG OD1 OD2 REMARK 470 GLU B 21 CG CD OE1 OE2 REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 29 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 48 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 29 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 31 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 31 -54.28 59.75 REMARK 500 GLU C 30 -128.32 47.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 101 DBREF 4QPO A 2 54 UNP P10026 TRAM1_ECOLI 2 54 DBREF 4QPO B 2 54 UNP P10026 TRAM1_ECOLI 2 54 DBREF 4QPO C 2 54 UNP P10026 TRAM1_ECOLI 2 54 DBREF 4QPO D 2 54 UNP P10026 TRAM1_ECOLI 2 54 SEQRES 1 A 53 ALA LYS VAL ASN LEU TYR ILE SER ASN ASP ALA TYR GLU SEQRES 2 A 53 LYS ILE ASN ALA ILE ILE GLU LYS ARG ARG GLN GLU GLY SEQRES 3 A 53 ALA ARG GLU LYS ASP VAL SER PHE SER ALA THR ALA SER SEQRES 4 A 53 MET LEU LEU GLU LEU GLY LEU ARG VAL HIS GLU ALA GLN SEQRES 5 A 53 MET SEQRES 1 B 53 ALA LYS VAL ASN LEU TYR ILE SER ASN ASP ALA TYR GLU SEQRES 2 B 53 LYS ILE ASN ALA ILE ILE GLU LYS ARG ARG GLN GLU GLY SEQRES 3 B 53 ALA ARG GLU LYS ASP VAL SER PHE SER ALA THR ALA SER SEQRES 4 B 53 MET LEU LEU GLU LEU GLY LEU ARG VAL HIS GLU ALA GLN SEQRES 5 B 53 MET SEQRES 1 C 53 ALA LYS VAL ASN LEU TYR ILE SER ASN ASP ALA TYR GLU SEQRES 2 C 53 LYS ILE ASN ALA ILE ILE GLU LYS ARG ARG GLN GLU GLY SEQRES 3 C 53 ALA ARG GLU LYS ASP VAL SER PHE SER ALA THR ALA SER SEQRES 4 C 53 MET LEU LEU GLU LEU GLY LEU ARG VAL HIS GLU ALA GLN SEQRES 5 C 53 MET SEQRES 1 D 53 ALA LYS VAL ASN LEU TYR ILE SER ASN ASP ALA TYR GLU SEQRES 2 D 53 LYS ILE ASN ALA ILE ILE GLU LYS ARG ARG GLN GLU GLY SEQRES 3 D 53 ALA ARG GLU LYS ASP VAL SER PHE SER ALA THR ALA SER SEQRES 4 D 53 MET LEU LEU GLU LEU GLY LEU ARG VAL HIS GLU ALA GLN SEQRES 5 D 53 MET HET PO4 B 101 5 HET PO4 C 101 5 HET PO4 C 102 5 HET PO4 D 101 5 HETNAM PO4 PHOSPHATE ION FORMUL 5 PO4 4(O4 P 3-) FORMUL 9 HOH *24(H2 O) HELIX 1 1 SER A 9 GLN A 25 1 17 HELIX 2 2 SER A 34 MET A 54 1 21 HELIX 3 3 SER B 9 GLU B 26 1 18 HELIX 4 4 ARG B 29 VAL B 33 5 5 HELIX 5 5 SER B 34 ALA B 52 1 19 HELIX 6 6 SER C 9 GLU C 26 1 18 HELIX 7 7 ARG C 29 VAL C 33 5 5 HELIX 8 8 SER C 34 GLU C 51 1 18 HELIX 9 9 ALA C 52 MET C 54 5 3 HELIX 10 10 SER D 9 GLU D 26 1 18 HELIX 11 11 ARG D 29 VAL D 33 5 5 HELIX 12 12 SER D 34 GLN D 53 1 20 SHEET 1 A 2 LYS A 3 TYR A 7 0 SHEET 2 A 2 LYS C 3 TYR C 7 -1 O VAL C 4 N LEU A 6 SHEET 1 B 2 LYS B 3 TYR B 7 0 SHEET 2 B 2 LYS D 3 TYR D 7 -1 O VAL D 4 N LEU B 6 SITE 1 AC1 4 SER B 34 PHE B 35 SER B 36 HOH B 208 SITE 1 AC2 4 GLU C 26 SER C 34 PHE C 35 SER C 36 SITE 1 AC3 3 HIS A 50 LYS C 22 ARG C 23 SITE 1 AC4 6 LYS A 3 HIS B 50 ASN C 5 LYS D 22 SITE 2 AC4 6 ARG D 23 GLU D 26 CRYST1 115.682 115.682 54.713 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008644 0.004991 0.000000 0.00000 SCALE2 0.000000 0.009982 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018277 0.00000