data_4QPR # _entry.id 4QPR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4QPR RCSB RCSB086358 WWPDB D_1000086358 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4QPR _pdbx_database_status.recvd_initial_deposition_date 2014-06-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kumar, S.' 1 'Yernool, D.A.' 2 # _citation.id primary _citation.title 'Crystal Structure of Gaf Domain of Potassium Sensor Histidine Kinase Kdpd from Escherichia Coli' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kumar, S.' 1 primary 'Yernool, D.A.' 2 # _cell.entry_id 4QPR _cell.length_a 35.310 _cell.length_b 57.610 _cell.length_c 61.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4QPR _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Sensor protein KdpD' 16514.131 1 2.7.13.3 ? ? ? 2 water nat water 18.015 99 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Sensor protein KdpD' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GA(MSE)DLYE(MSE)SKALAVGRSPQDIAATSEQFIASTFHARSQVLLPDDNGKLQPLTHPQG(MSE)TPWDDAIAQWS FDKGLPAGAGTDTLPGVPYQILPLKSGEKTYGLVVVEPGNLRQL(MSE)IPEQQRLLETFTLLVANALERLTKLAAALEH HHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;GAMDLYEMSKALAVGRSPQDIAATSEQFIASTFHARSQVLLPDDNGKLQPLTHPQGMTPWDDAIAQWSFDKGLPAGAGTD TLPGVPYQILPLKSGEKTYGLVVVEPGNLRQLMIPEQQRLLETFTLLVANALERLTKLAAALEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MSE n 1 4 ASP n 1 5 LEU n 1 6 TYR n 1 7 GLU n 1 8 MSE n 1 9 SER n 1 10 LYS n 1 11 ALA n 1 12 LEU n 1 13 ALA n 1 14 VAL n 1 15 GLY n 1 16 ARG n 1 17 SER n 1 18 PRO n 1 19 GLN n 1 20 ASP n 1 21 ILE n 1 22 ALA n 1 23 ALA n 1 24 THR n 1 25 SER n 1 26 GLU n 1 27 GLN n 1 28 PHE n 1 29 ILE n 1 30 ALA n 1 31 SER n 1 32 THR n 1 33 PHE n 1 34 HIS n 1 35 ALA n 1 36 ARG n 1 37 SER n 1 38 GLN n 1 39 VAL n 1 40 LEU n 1 41 LEU n 1 42 PRO n 1 43 ASP n 1 44 ASP n 1 45 ASN n 1 46 GLY n 1 47 LYS n 1 48 LEU n 1 49 GLN n 1 50 PRO n 1 51 LEU n 1 52 THR n 1 53 HIS n 1 54 PRO n 1 55 GLN n 1 56 GLY n 1 57 MSE n 1 58 THR n 1 59 PRO n 1 60 TRP n 1 61 ASP n 1 62 ASP n 1 63 ALA n 1 64 ILE n 1 65 ALA n 1 66 GLN n 1 67 TRP n 1 68 SER n 1 69 PHE n 1 70 ASP n 1 71 LYS n 1 72 GLY n 1 73 LEU n 1 74 PRO n 1 75 ALA n 1 76 GLY n 1 77 ALA n 1 78 GLY n 1 79 THR n 1 80 ASP n 1 81 THR n 1 82 LEU n 1 83 PRO n 1 84 GLY n 1 85 VAL n 1 86 PRO n 1 87 TYR n 1 88 GLN n 1 89 ILE n 1 90 LEU n 1 91 PRO n 1 92 LEU n 1 93 LYS n 1 94 SER n 1 95 GLY n 1 96 GLU n 1 97 LYS n 1 98 THR n 1 99 TYR n 1 100 GLY n 1 101 LEU n 1 102 VAL n 1 103 VAL n 1 104 VAL n 1 105 GLU n 1 106 PRO n 1 107 GLY n 1 108 ASN n 1 109 LEU n 1 110 ARG n 1 111 GLN n 1 112 LEU n 1 113 MSE n 1 114 ILE n 1 115 PRO n 1 116 GLU n 1 117 GLN n 1 118 GLN n 1 119 ARG n 1 120 LEU n 1 121 LEU n 1 122 GLU n 1 123 THR n 1 124 PHE n 1 125 THR n 1 126 LEU n 1 127 LEU n 1 128 VAL n 1 129 ALA n 1 130 ASN n 1 131 ALA n 1 132 LEU n 1 133 GLU n 1 134 ARG n 1 135 LEU n 1 136 THR n 1 137 LYS n 1 138 LEU n 1 139 ALA n 1 140 ALA n 1 141 ALA n 1 142 LEU n 1 143 GLU n 1 144 HIS n 1 145 HIS n 1 146 HIS n 1 147 HIS n 1 148 HIS n 1 149 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'b0695, ECDH1ME8569_0654, EcDH1_2941, JW0683, kdpD' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain C43/90 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PHISP1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KDPD_ECOLI _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LYEMSKALAVGRSPQDIAATSEQFIASTFHARSQVLLPDDNGKLQPLTHPQGMTPWDDAIAQWSFDKGLPAGAGTDTLPG VPYQILPLKSGEKTYGLVVVEPGNLRQLMIPEQQRLLETFTLLVANALERLT ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession P21865 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4QPR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 136 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P21865 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 132 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 515 _struct_ref_seq.pdbx_auth_seq_align_end 646 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4QPR GLY A 1 ? UNP P21865 ? ? 'EXPRESSION TAG' -3 1 1 4QPR ALA A 2 ? UNP P21865 ? ? 'EXPRESSION TAG' -2 2 1 4QPR MSE A 3 ? UNP P21865 ? ? 'EXPRESSION TAG' -1 3 1 4QPR ASP A 4 ? UNP P21865 ? ? 'EXPRESSION TAG' 0 4 1 4QPR LYS A 137 ? UNP P21865 ? ? 'EXPRESSION TAG' 647 5 1 4QPR LEU A 138 ? UNP P21865 ? ? 'EXPRESSION TAG' 648 6 1 4QPR ALA A 139 ? UNP P21865 ? ? 'EXPRESSION TAG' 649 7 1 4QPR ALA A 140 ? UNP P21865 ? ? 'EXPRESSION TAG' 650 8 1 4QPR ALA A 141 ? UNP P21865 ? ? 'EXPRESSION TAG' 651 9 1 4QPR LEU A 142 ? UNP P21865 ? ? 'EXPRESSION TAG' 652 10 1 4QPR GLU A 143 ? UNP P21865 ? ? 'EXPRESSION TAG' 653 11 1 4QPR HIS A 144 ? UNP P21865 ? ? 'EXPRESSION TAG' 654 12 1 4QPR HIS A 145 ? UNP P21865 ? ? 'EXPRESSION TAG' 655 13 1 4QPR HIS A 146 ? UNP P21865 ? ? 'EXPRESSION TAG' 656 14 1 4QPR HIS A 147 ? UNP P21865 ? ? 'EXPRESSION TAG' 657 15 1 4QPR HIS A 148 ? UNP P21865 ? ? 'EXPRESSION TAG' 658 16 1 4QPR HIS A 149 ? UNP P21865 ? ? 'EXPRESSION TAG' 659 17 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4QPR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.88 _exptl_crystal.density_percent_sol 34.52 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details '30-35% PEG 3350, 0.1M BIS-TRIS, pH 6.0-6.5 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2012-12-14 _diffrn_detector.details 'U33S UNDULATOR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97932 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_wavelength 0.97932 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 4QPR _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.500 _reflns.d_resolution_high 1.548 _reflns.number_obs 18769 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.7500 _reflns.B_iso_Wilson_estimate 16.63 _reflns.pdbx_redundancy 14.400 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.55 _reflns_shell.d_res_low 1.59 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4QPR _refine.ls_number_reflns_obs 18764 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.960 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.50 _refine.ls_d_res_high 1.55 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.187 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.185 _refine.ls_R_factor_R_free 0.203 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.020 _refine.ls_number_reflns_R_free 1881 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 22.50 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.140 _refine.pdbx_overall_phase_error 18.600 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1080 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 99 _refine_hist.number_atoms_total 1179 _refine_hist.d_res_high 1.55 _refine_hist.d_res_low 30.50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.008 ? ? 1103 ? 'X-RAY DIFFRACTION' f_angle_d 1.210 ? ? 1503 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 13.146 ? ? 409 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.078 ? ? 174 ? 'X-RAY DIFFRACTION' f_plane_restr 0.008 ? ? 196 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.5480 1.5898 1270 0.2009 100.00 0.2579 . . 145 . . . . 'X-RAY DIFFRACTION' . 1.5898 1.6366 1258 0.2043 100.00 0.2309 . . 153 . . . . 'X-RAY DIFFRACTION' . 1.6366 1.6894 1300 0.1890 100.00 0.2409 . . 133 . . . . 'X-RAY DIFFRACTION' . 1.6894 1.7498 1273 0.1895 100.00 0.2089 . . 142 . . . . 'X-RAY DIFFRACTION' . 1.7498 1.8199 1269 0.1823 100.00 0.2251 . . 139 . . . . 'X-RAY DIFFRACTION' . 1.8199 1.9027 1290 0.1657 100.00 0.2154 . . 141 . . . . 'X-RAY DIFFRACTION' . 1.9027 2.0030 1290 0.1766 100.00 0.1927 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.0030 2.1284 1272 0.1855 100.00 0.1802 . . 146 . . . . 'X-RAY DIFFRACTION' . 2.1284 2.2927 1300 0.1793 100.00 0.2052 . . 142 . . . . 'X-RAY DIFFRACTION' . 2.2927 2.5234 1322 0.1807 100.00 0.1843 . . 148 . . . . 'X-RAY DIFFRACTION' . 2.5234 2.8883 1299 0.1971 100.00 0.2349 . . 147 . . . . 'X-RAY DIFFRACTION' . 2.8883 3.6379 1337 0.1769 100.00 0.1966 . . 147 . . . . 'X-RAY DIFFRACTION' . 3.6379 30.5059 1403 0.1898 99.00 0.1891 . . 157 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4QPR _struct.title 'CRYSTAL STRUCTURE OF GAF DOMAIN of POTASSIUM SENSOR HISTIDINE KINASE KDPD FROM ESCHERICHIA COLI' _struct.pdbx_descriptor 'Osmosensitive K+ channel signal transduction histidine kinase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4QPR _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MSE A 3 ? VAL A 14 ? MSE A -1 VAL A 524 1 ? 12 HELX_P HELX_P2 2 SER A 17 ? HIS A 34 ? SER A 527 HIS A 544 1 ? 18 HELX_P HELX_P3 3 ASP A 61 ? GLY A 72 ? ASP A 571 GLY A 582 1 ? 12 HELX_P HELX_P4 4 ASN A 108 ? MSE A 113 ? ASN A 618 MSE A 623 1 ? 6 HELX_P HELX_P5 5 ILE A 114 ? LEU A 142 ? ILE A 624 LEU A 652 1 ? 29 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 2 C ? ? ? 1_555 A MSE 3 N ? ? A ALA -2 A MSE -1 1_555 ? ? ? ? ? ? ? 1.325 ? covale2 covale ? ? A MSE 3 C ? ? ? 1_555 A ASP 4 N ? ? A MSE -1 A ASP 0 1_555 ? ? ? ? ? ? ? 1.326 ? covale3 covale ? ? A GLU 7 C ? ? ? 1_555 A MSE 8 N ? ? A GLU 517 A MSE 518 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale ? ? A MSE 8 C ? ? ? 1_555 A SER 9 N ? ? A MSE 518 A SER 519 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale ? ? A GLY 56 C ? ? ? 1_555 A MSE 57 N ? ? A GLY 566 A MSE 567 1_555 ? ? ? ? ? ? ? 1.331 ? covale6 covale ? ? A MSE 57 C ? ? ? 1_555 A THR 58 N ? ? A MSE 567 A THR 568 1_555 ? ? ? ? ? ? ? 1.331 ? covale7 covale ? ? A LEU 112 C ? ? ? 1_555 A MSE 113 N ? ? A LEU 622 A MSE 623 1_555 ? ? ? ? ? ? ? 1.331 ? covale8 covale ? ? A MSE 113 C ? ? ? 1_555 A ILE 114 N ? ? A MSE 623 A ILE 624 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLN _struct_mon_prot_cis.label_seq_id 49 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLN _struct_mon_prot_cis.auth_seq_id 559 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 50 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 560 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.69 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 48 ? GLN A 49 ? LEU A 558 GLN A 559 A 2 ALA A 35 ? PRO A 42 ? ALA A 545 PRO A 552 A 3 LYS A 97 ? PRO A 106 ? LYS A 607 PRO A 616 A 4 GLN A 88 ? SER A 94 ? GLN A 598 SER A 604 A 5 ALA A 75 ? GLY A 76 ? ALA A 585 GLY A 586 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN A 49 ? O GLN A 559 N LEU A 41 ? N LEU A 551 A 2 3 N ARG A 36 ? N ARG A 546 O GLU A 105 ? O GLU A 615 A 3 4 O TYR A 99 ? O TYR A 609 N LEU A 92 ? N LEU A 602 A 4 5 O ILE A 89 ? O ILE A 599 N ALA A 75 ? N ALA A 585 # _database_PDB_matrix.entry_id 4QPR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4QPR _atom_sites.fract_transf_matrix[1][1] 0.028321 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017358 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016393 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 -3 GLY GLY A . n A 1 2 ALA 2 -2 -2 ALA ALA A . n A 1 3 MSE 3 -1 -1 MSE MSE A . n A 1 4 ASP 4 0 0 ASP ASP A . n A 1 5 LEU 5 515 515 LEU LEU A . n A 1 6 TYR 6 516 516 TYR TYR A . n A 1 7 GLU 7 517 517 GLU GLU A . n A 1 8 MSE 8 518 518 MSE MSE A . n A 1 9 SER 9 519 519 SER SER A . n A 1 10 LYS 10 520 520 LYS LYS A . n A 1 11 ALA 11 521 521 ALA ALA A . n A 1 12 LEU 12 522 522 LEU LEU A . n A 1 13 ALA 13 523 523 ALA ALA A . n A 1 14 VAL 14 524 524 VAL VAL A . n A 1 15 GLY 15 525 525 GLY GLY A . n A 1 16 ARG 16 526 526 ARG ARG A . n A 1 17 SER 17 527 527 SER SER A . n A 1 18 PRO 18 528 528 PRO PRO A . n A 1 19 GLN 19 529 529 GLN GLN A . n A 1 20 ASP 20 530 530 ASP ASP A . n A 1 21 ILE 21 531 531 ILE ILE A . n A 1 22 ALA 22 532 532 ALA ALA A . n A 1 23 ALA 23 533 533 ALA ALA A . n A 1 24 THR 24 534 534 THR THR A . n A 1 25 SER 25 535 535 SER SER A . n A 1 26 GLU 26 536 536 GLU GLU A . n A 1 27 GLN 27 537 537 GLN GLN A . n A 1 28 PHE 28 538 538 PHE PHE A . n A 1 29 ILE 29 539 539 ILE ILE A . n A 1 30 ALA 30 540 540 ALA ALA A . n A 1 31 SER 31 541 541 SER SER A . n A 1 32 THR 32 542 542 THR THR A . n A 1 33 PHE 33 543 543 PHE PHE A . n A 1 34 HIS 34 544 544 HIS HIS A . n A 1 35 ALA 35 545 545 ALA ALA A . n A 1 36 ARG 36 546 546 ARG ARG A . n A 1 37 SER 37 547 547 SER SER A . n A 1 38 GLN 38 548 548 GLN GLN A . n A 1 39 VAL 39 549 549 VAL VAL A . n A 1 40 LEU 40 550 550 LEU LEU A . n A 1 41 LEU 41 551 551 LEU LEU A . n A 1 42 PRO 42 552 552 PRO PRO A . n A 1 43 ASP 43 553 553 ASP ASP A . n A 1 44 ASP 44 554 554 ASP ASP A . n A 1 45 ASN 45 555 555 ASN ASN A . n A 1 46 GLY 46 556 556 GLY GLY A . n A 1 47 LYS 47 557 557 LYS LYS A . n A 1 48 LEU 48 558 558 LEU LEU A . n A 1 49 GLN 49 559 559 GLN GLN A . n A 1 50 PRO 50 560 560 PRO PRO A . n A 1 51 LEU 51 561 561 LEU LEU A . n A 1 52 THR 52 562 562 THR THR A . n A 1 53 HIS 53 563 563 HIS HIS A . n A 1 54 PRO 54 564 564 PRO PRO A . n A 1 55 GLN 55 565 565 GLN GLN A . n A 1 56 GLY 56 566 566 GLY GLY A . n A 1 57 MSE 57 567 567 MSE MSE A . n A 1 58 THR 58 568 568 THR THR A . n A 1 59 PRO 59 569 569 PRO PRO A . n A 1 60 TRP 60 570 570 TRP TRP A . n A 1 61 ASP 61 571 571 ASP ASP A . n A 1 62 ASP 62 572 572 ASP ASP A . n A 1 63 ALA 63 573 573 ALA ALA A . n A 1 64 ILE 64 574 574 ILE ILE A . n A 1 65 ALA 65 575 575 ALA ALA A . n A 1 66 GLN 66 576 576 GLN GLN A . n A 1 67 TRP 67 577 577 TRP TRP A . n A 1 68 SER 68 578 578 SER SER A . n A 1 69 PHE 69 579 579 PHE PHE A . n A 1 70 ASP 70 580 580 ASP ASP A . n A 1 71 LYS 71 581 581 LYS LYS A . n A 1 72 GLY 72 582 582 GLY GLY A . n A 1 73 LEU 73 583 583 LEU LEU A . n A 1 74 PRO 74 584 584 PRO PRO A . n A 1 75 ALA 75 585 585 ALA ALA A . n A 1 76 GLY 76 586 586 GLY GLY A . n A 1 77 ALA 77 587 587 ALA ALA A . n A 1 78 GLY 78 588 588 GLY GLY A . n A 1 79 THR 79 589 589 THR THR A . n A 1 80 ASP 80 590 590 ASP ASP A . n A 1 81 THR 81 591 591 THR THR A . n A 1 82 LEU 82 592 592 LEU LEU A . n A 1 83 PRO 83 593 593 PRO PRO A . n A 1 84 GLY 84 594 594 GLY GLY A . n A 1 85 VAL 85 595 595 VAL VAL A . n A 1 86 PRO 86 596 596 PRO PRO A . n A 1 87 TYR 87 597 597 TYR TYR A . n A 1 88 GLN 88 598 598 GLN GLN A . n A 1 89 ILE 89 599 599 ILE ILE A . n A 1 90 LEU 90 600 600 LEU LEU A . n A 1 91 PRO 91 601 601 PRO PRO A . n A 1 92 LEU 92 602 602 LEU LEU A . n A 1 93 LYS 93 603 603 LYS LYS A . n A 1 94 SER 94 604 604 SER SER A . n A 1 95 GLY 95 605 605 GLY GLY A . n A 1 96 GLU 96 606 606 GLU GLU A . n A 1 97 LYS 97 607 607 LYS LYS A . n A 1 98 THR 98 608 608 THR THR A . n A 1 99 TYR 99 609 609 TYR TYR A . n A 1 100 GLY 100 610 610 GLY GLY A . n A 1 101 LEU 101 611 611 LEU LEU A . n A 1 102 VAL 102 612 612 VAL VAL A . n A 1 103 VAL 103 613 613 VAL VAL A . n A 1 104 VAL 104 614 614 VAL VAL A . n A 1 105 GLU 105 615 615 GLU GLU A . n A 1 106 PRO 106 616 616 PRO PRO A . n A 1 107 GLY 107 617 617 GLY GLY A . n A 1 108 ASN 108 618 618 ASN ASN A . n A 1 109 LEU 109 619 619 LEU LEU A . n A 1 110 ARG 110 620 620 ARG ARG A . n A 1 111 GLN 111 621 621 GLN GLN A . n A 1 112 LEU 112 622 622 LEU LEU A . n A 1 113 MSE 113 623 623 MSE MSE A . n A 1 114 ILE 114 624 624 ILE ILE A . n A 1 115 PRO 115 625 625 PRO PRO A . n A 1 116 GLU 116 626 626 GLU GLU A . n A 1 117 GLN 117 627 627 GLN GLN A . n A 1 118 GLN 118 628 628 GLN GLN A . n A 1 119 ARG 119 629 629 ARG ARG A . n A 1 120 LEU 120 630 630 LEU LEU A . n A 1 121 LEU 121 631 631 LEU LEU A . n A 1 122 GLU 122 632 632 GLU GLU A . n A 1 123 THR 123 633 633 THR THR A . n A 1 124 PHE 124 634 634 PHE PHE A . n A 1 125 THR 125 635 635 THR THR A . n A 1 126 LEU 126 636 636 LEU LEU A . n A 1 127 LEU 127 637 637 LEU LEU A . n A 1 128 VAL 128 638 638 VAL VAL A . n A 1 129 ALA 129 639 639 ALA ALA A . n A 1 130 ASN 130 640 640 ASN ASN A . n A 1 131 ALA 131 641 641 ALA ALA A . n A 1 132 LEU 132 642 642 LEU LEU A . n A 1 133 GLU 133 643 643 GLU GLU A . n A 1 134 ARG 134 644 644 ARG ARG A . n A 1 135 LEU 135 645 645 LEU LEU A . n A 1 136 THR 136 646 646 THR THR A . n A 1 137 LYS 137 647 647 LYS LYS A . n A 1 138 LEU 138 648 648 LEU LEU A . n A 1 139 ALA 139 649 649 ALA ALA A . n A 1 140 ALA 140 650 650 ALA ALA A . n A 1 141 ALA 141 651 651 ALA ALA A . n A 1 142 LEU 142 652 652 LEU LEU A . n A 1 143 GLU 143 653 ? ? ? A . n A 1 144 HIS 144 654 ? ? ? A . n A 1 145 HIS 145 655 ? ? ? A . n A 1 146 HIS 146 656 ? ? ? A . n A 1 147 HIS 147 657 ? ? ? A . n A 1 148 HIS 148 658 ? ? ? A . n A 1 149 HIS 149 659 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 701 701 HOH HOH A . B 2 HOH 2 702 702 HOH HOH A . B 2 HOH 3 703 703 HOH HOH A . B 2 HOH 4 704 704 HOH HOH A . B 2 HOH 5 705 705 HOH HOH A . B 2 HOH 6 706 706 HOH HOH A . B 2 HOH 7 707 707 HOH HOH A . B 2 HOH 8 708 708 HOH HOH A . B 2 HOH 9 709 709 HOH HOH A . B 2 HOH 10 710 710 HOH HOH A . B 2 HOH 11 711 711 HOH HOH A . B 2 HOH 12 712 712 HOH HOH A . B 2 HOH 13 713 713 HOH HOH A . B 2 HOH 14 714 714 HOH HOH A . B 2 HOH 15 715 715 HOH HOH A . B 2 HOH 16 716 716 HOH HOH A . B 2 HOH 17 717 717 HOH HOH A . B 2 HOH 18 718 718 HOH HOH A . B 2 HOH 19 719 719 HOH HOH A . B 2 HOH 20 720 720 HOH HOH A . B 2 HOH 21 721 721 HOH HOH A . B 2 HOH 22 722 722 HOH HOH A . B 2 HOH 23 723 723 HOH HOH A . B 2 HOH 24 724 724 HOH HOH A . B 2 HOH 25 725 725 HOH HOH A . B 2 HOH 26 726 726 HOH HOH A . B 2 HOH 27 727 727 HOH HOH A . B 2 HOH 28 728 728 HOH HOH A . B 2 HOH 29 729 729 HOH HOH A . B 2 HOH 30 730 730 HOH HOH A . B 2 HOH 31 731 731 HOH HOH A . B 2 HOH 32 732 732 HOH HOH A . B 2 HOH 33 733 733 HOH HOH A . B 2 HOH 34 734 734 HOH HOH A . B 2 HOH 35 735 735 HOH HOH A . B 2 HOH 36 736 736 HOH HOH A . B 2 HOH 37 737 737 HOH HOH A . B 2 HOH 38 738 738 HOH HOH A . B 2 HOH 39 739 739 HOH HOH A . B 2 HOH 40 740 740 HOH HOH A . B 2 HOH 41 741 741 HOH HOH A . B 2 HOH 42 742 742 HOH HOH A . B 2 HOH 43 743 743 HOH HOH A . B 2 HOH 44 744 744 HOH HOH A . B 2 HOH 45 745 745 HOH HOH A . B 2 HOH 46 746 746 HOH HOH A . B 2 HOH 47 747 747 HOH HOH A . B 2 HOH 48 748 748 HOH HOH A . B 2 HOH 49 749 749 HOH HOH A . B 2 HOH 50 750 750 HOH HOH A . B 2 HOH 51 751 751 HOH HOH A . B 2 HOH 52 752 752 HOH HOH A . B 2 HOH 53 753 753 HOH HOH A . B 2 HOH 54 754 754 HOH HOH A . B 2 HOH 55 755 755 HOH HOH A . B 2 HOH 56 756 756 HOH HOH A . B 2 HOH 57 757 757 HOH HOH A . B 2 HOH 58 758 758 HOH HOH A . B 2 HOH 59 759 759 HOH HOH A . B 2 HOH 60 760 760 HOH HOH A . B 2 HOH 61 761 761 HOH HOH A . B 2 HOH 62 762 762 HOH HOH A . B 2 HOH 63 763 763 HOH HOH A . B 2 HOH 64 764 764 HOH HOH A . B 2 HOH 65 765 765 HOH HOH A . B 2 HOH 66 766 766 HOH HOH A . B 2 HOH 67 767 767 HOH HOH A . B 2 HOH 68 768 768 HOH HOH A . B 2 HOH 69 769 769 HOH HOH A . B 2 HOH 70 770 770 HOH HOH A . B 2 HOH 71 771 771 HOH HOH A . B 2 HOH 72 772 772 HOH HOH A . B 2 HOH 73 773 773 HOH HOH A . B 2 HOH 74 774 774 HOH HOH A . B 2 HOH 75 775 775 HOH HOH A . B 2 HOH 76 776 776 HOH HOH A . B 2 HOH 77 777 777 HOH HOH A . B 2 HOH 78 778 778 HOH HOH A . B 2 HOH 79 779 779 HOH HOH A . B 2 HOH 80 780 780 HOH HOH A . B 2 HOH 81 781 781 HOH HOH A . B 2 HOH 82 782 782 HOH HOH A . B 2 HOH 83 783 783 HOH HOH A . B 2 HOH 84 784 784 HOH HOH A . B 2 HOH 85 785 785 HOH HOH A . B 2 HOH 86 786 786 HOH HOH A . B 2 HOH 87 787 787 HOH HOH A . B 2 HOH 88 788 788 HOH HOH A . B 2 HOH 89 789 789 HOH HOH A . B 2 HOH 90 790 790 HOH HOH A . B 2 HOH 91 791 791 HOH HOH A . B 2 HOH 92 792 792 HOH HOH A . B 2 HOH 93 793 793 HOH HOH A . B 2 HOH 94 794 794 HOH HOH A . B 2 HOH 95 795 795 HOH HOH A . B 2 HOH 96 796 796 HOH HOH A . B 2 HOH 97 797 797 HOH HOH A . B 2 HOH 98 798 798 HOH HOH A . B 2 HOH 99 799 799 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 3 A MSE -1 ? MET SELENOMETHIONINE 2 A MSE 8 A MSE 518 ? MET SELENOMETHIONINE 3 A MSE 57 A MSE 567 ? MET SELENOMETHIONINE 4 A MSE 113 A MSE 623 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1760 ? 1 MORE -13 ? 1 'SSA (A^2)' 14090 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 35.3100000000 0.0000000000 -1.0000000000 0.0000000000 57.6100000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2015-09-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 6.2256 27.3567 -77.0027 0.2854 0.1447 0.2389 0.0115 0.0545 -0.0286 2.3760 0.7566 4.6001 0.2309 0.3892 1.6780 -0.2711 -0.0035 0.0781 0.3377 -0.0711 0.4027 -0.2448 0.0445 0.1900 'X-RAY DIFFRACTION' 2 ? refined 8.6257 9.0338 -74.7334 0.1870 0.1975 0.1464 -0.0199 0.0017 0.0291 2.3586 2.6914 3.1621 -0.0934 0.6883 -0.2170 0.1188 -0.4628 -0.3495 0.3541 -0.0004 0.1439 0.2654 -0.2948 -0.0897 'X-RAY DIFFRACTION' 3 ? refined 15.4132 11.2590 -80.5862 0.0774 0.1003 0.1095 0.0044 -0.0055 0.0030 0.7851 1.5335 1.8232 -0.8079 -0.0824 0.0816 -0.0063 -0.0270 0.0199 0.0508 0.0249 -0.2666 0.0473 0.1848 -0.0109 'X-RAY DIFFRACTION' 4 ? refined 9.1852 14.3230 -93.8935 0.1047 0.1594 0.1120 0.0009 -0.0125 0.0042 6.6284 3.8261 3.4475 2.1238 -0.7956 -0.7455 0.2079 0.3228 -0.2826 -0.2540 -0.0851 -0.0373 0.2503 -0.2322 -0.0852 'X-RAY DIFFRACTION' 5 ? refined 15.5275 23.4769 -75.7321 0.1532 0.1336 0.1242 0.0066 -0.0234 0.0092 1.5508 2.0874 7.2040 -0.0790 -0.2069 0.5776 -0.0306 -0.2317 0.0176 0.4225 -0.0264 -0.1034 -0.4274 0.0351 0.0254 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESID -3:542)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESID 543:581)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESID 582:616)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESID 617:624)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESID 625:652)' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX 'model building' . ? 1 PHENIX refinement '(PHENIX.REFINE: DEV_1230)' ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 PHENIX phasing . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 772 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 781 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.96 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 653 ? A GLU 143 2 1 Y 1 A HIS 654 ? A HIS 144 3 1 Y 1 A HIS 655 ? A HIS 145 4 1 Y 1 A HIS 656 ? A HIS 146 5 1 Y 1 A HIS 657 ? A HIS 147 6 1 Y 1 A HIS 658 ? A HIS 148 7 1 Y 1 A HIS 659 ? A HIS 149 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #