HEADER OXIDOREDUCTASE 26-JUN-14 4QQ3 TITLE INOSINE 5'-MONOPHOSPHATE DEHYDROGENASE FROM VIBRIO CHOLERAE, DELETION TITLE 2 MUTANT, IN COMPLEX WITH XMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 220-489; COMPND 5 SYNONYM: IMP DEHYDROGENASE, IMPD, IMPDH; COMPND 6 EC: 1.1.1.205; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR EL TOR STR. N16961; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: ATCC 39315 / EL TOR INABA N16961; SOURCE 5 GENE: GUAB, VC0767, VC_0767; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 3 DISEASES, CSGID, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,N.MALTSEVA,M.MAKOWSKA-GRZYSKA,M.GU,W.F.ANDERSON, AUTHOR 2 A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 4 20-SEP-23 4QQ3 1 REMARK SEQADV REVDAT 3 22-NOV-17 4QQ3 1 REMARK REVDAT 2 16-AUG-17 4QQ3 1 SOURCE REVDAT 1 16-JUL-14 4QQ3 0 JRNL AUTH J.OSIPIUK,N.MALTSEVA,M.MAKOWSKA-GRZYSKA,M.GU,W.F.ANDERSON, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL INOSINE 5'-MONOPHOSPHATE DEHYDROGENASE FROM VIBRIO CHOLERAE, JRNL TITL 2 DELETION MUTANT, IN COMPLEX WITH XMP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 40207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1992 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2327 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2187 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 188 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.11000 REMARK 3 B22 (A**2) : -1.11000 REMARK 3 B33 (A**2) : 2.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.078 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2337 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2347 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3182 ; 1.695 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5390 ; 0.837 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ; 5.808 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;33.039 ;23.258 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 406 ;14.969 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;19.981 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 379 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2689 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 512 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1235 ; 2.010 ; 2.326 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1234 ; 2.008 ; 2.325 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1546 ; 2.866 ; 3.466 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 503 REMARK 3 ORIGIN FOR THE GROUP (A): -2.1544 24.2778 16.9284 REMARK 3 T TENSOR REMARK 3 T11: 0.0921 T22: 0.0070 REMARK 3 T33: 0.0451 T12: -0.0251 REMARK 3 T13: 0.0320 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.8824 L22: 2.3677 REMARK 3 L33: 0.2746 L12: 0.5088 REMARK 3 L13: 0.2320 L23: -0.2694 REMARK 3 S TENSOR REMARK 3 S11: -0.0811 S12: 0.0265 S13: -0.0960 REMARK 3 S21: -0.3484 S22: 0.0962 S23: 0.0085 REMARK 3 S31: 0.0911 S32: -0.0209 S33: -0.0150 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4QQ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086370. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40250 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 38.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.49900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, HKL-3000 REMARK 200 STARTING MODEL: 4QNE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 2000, 19.3% PEG 200, 0.05 M REMARK 280 TRIS-BUFFER, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.45000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.45000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.45000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.45000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.45000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.45000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BASED ON PISA REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -198.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 106.90000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 53.45000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 53.45000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -53.45000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 53.45000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 657 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 GLY A 374 REMARK 465 GLU A 375 REMARK 465 VAL A 376 REMARK 465 ILE A 377 REMARK 465 LEU A 378 REMARK 465 TYR A 379 REMARK 465 GLN A 380 REMARK 465 GLY A 391 REMARK 465 SER A 392 REMARK 465 LEU A 393 REMARK 465 GLY A 394 REMARK 465 ALA A 395 REMARK 465 MET A 396 REMARK 465 SER A 397 REMARK 465 LYS A 398 REMARK 465 GLY A 399 REMARK 465 SER A 400 REMARK 465 SER A 401 REMARK 465 ASP A 402 REMARK 465 ARG A 403 REMARK 465 TYR A 404 REMARK 465 PHE A 405 REMARK 465 GLN A 406 REMARK 465 THR A 407 REMARK 465 ASP A 408 REMARK 465 ASN A 409 REMARK 465 ALA A 410 REMARK 465 ALA A 411 REMARK 465 ASP A 412 REMARK 465 LYS A 413 REMARK 465 LEU A 414 REMARK 465 VAL A 415 REMARK 465 PRO A 416 REMARK 465 GLU A 417 REMARK 465 GLY A 418 REMARK 465 ILE A 419 REMARK 465 GLU A 420 REMARK 465 GLY A 468 REMARK 465 MET A 469 REMARK 465 LYS A 470 REMARK 465 GLU A 471 REMARK 465 SER A 472 REMARK 465 HIS A 473 REMARK 465 VAL A 474 REMARK 465 HIS A 475 REMARK 465 ASP A 476 REMARK 465 VAL A 477 REMARK 465 GLN A 478 REMARK 465 ILE A 479 REMARK 465 THR A 480 REMARK 465 LYS A 481 REMARK 465 GLU A 482 REMARK 465 ALA A 483 REMARK 465 PRO A 484 REMARK 465 ASN A 485 REMARK 465 TYR A 486 REMARK 465 ARG A 487 REMARK 465 LEU A 488 REMARK 465 GLY A 489 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 697 O HOH A 783 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 456 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 456 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 8 176.26 171.96 REMARK 500 PRO A 45 49.52 -83.78 REMARK 500 VAL A 54 -50.53 -124.74 REMARK 500 GLU A 56 -165.38 -128.14 REMARK 500 SER A 91 31.11 -83.47 REMARK 500 ALA A 281 14.75 -144.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XMP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FXS RELATED DB: PDB REMARK 900 INOSINE 5'-MONOPHOSPHATE DEHYDROGENASE FROM VIBRIO CHOLERAE REMARK 900 COMPLEXED WITH IMP AND MYCOPHENOLIC ACID REMARK 900 RELATED ID: 4FEZ RELATED DB: PDB REMARK 900 INOSINE 5'-MONOPHOSPHATE DEHYDROGENASE FROM VIBRIO CHOLERAE, REMARK 900 DELETION MUTANT REMARK 900 RELATED ID: 4FO4 RELATED DB: PDB REMARK 900 INOSINE 5'-MONOPHOSPHATE DEHYDROGENASE FROM VIBRIO CHOLERAE, REMARK 900 DELETION MUTANT, COMPLEXED WITH IMP AND MYCOPHENOLIC ACID REMARK 900 RELATED ID: 4FF0 RELATED DB: PDB REMARK 900 INOSINE 5'-MONOPHOSPHATE DEHYDROGENASE FROM VIBRIO CHOLERAE, REMARK 900 DELETION MUTANT, COMPLEXED WITH IMP REMARK 900 RELATED ID: 4QNE RELATED DB: PDB REMARK 900 INOSINE 5'-MONOPHOSPHATE DEHYDROGENASE FROM VIBRIO CHOLERAE, REMARK 900 DELETION MUTANT, IN COMPLEX WITH NAD AND IMP REMARK 900 RELATED ID: CSGID-IDP04364 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 91-219 ARE DELETED AND REPLACED WITH AN SGG LINKER. DBREF 4QQ3 A 1 90 UNP Q9KTW3 Q9KTW3_VIBCH 1 90 DBREF 4QQ3 A 220 489 UNP Q9KTW3 Q9KTW3_VIBCH 220 489 SEQADV 4QQ3 SER A -2 UNP Q9KTW3 EXPRESSION TAG SEQADV 4QQ3 ASN A -1 UNP Q9KTW3 EXPRESSION TAG SEQADV 4QQ3 ALA A 0 UNP Q9KTW3 EXPRESSION TAG SEQADV 4QQ3 SER A 91 UNP Q9KTW3 LINKER SEQADV 4QQ3 GLY A 92 UNP Q9KTW3 LINKER SEQADV 4QQ3 GLY A 93 UNP Q9KTW3 LINKER SEQRES 1 A 366 SER ASN ALA MET HIS MET LEU ARG ILE ALA LYS GLU ALA SEQRES 2 A 366 LEU THR PHE ASP ASP VAL LEU LEU VAL PRO ALA HIS SER SEQRES 3 A 366 THR VAL LEU PRO ASN THR ALA ASP LEU ARG THR ARG LEU SEQRES 4 A 366 THR LYS ASN ILE ALA LEU ASN ILE PRO MET VAL SER ALA SEQRES 5 A 366 SER MET ASP THR VAL THR GLU ALA ARG LEU ALA ILE ALA SEQRES 6 A 366 LEU ALA GLN GLU GLY GLY ILE GLY PHE ILE HIS LYS ASN SEQRES 7 A 366 MET SER ILE GLU GLN GLN ALA ALA GLN VAL HIS GLN VAL SEQRES 8 A 366 LYS ILE SER GLY GLY LEU ARG VAL GLY ALA ALA VAL GLY SEQRES 9 A 366 ALA ALA PRO GLY ASN GLU GLU ARG VAL LYS ALA LEU VAL SEQRES 10 A 366 GLU ALA GLY VAL ASP VAL LEU LEU ILE ASP SER SER HIS SEQRES 11 A 366 GLY HIS SER GLU GLY VAL LEU GLN ARG ILE ARG GLU THR SEQRES 12 A 366 ARG ALA ALA TYR PRO HIS LEU GLU ILE ILE GLY GLY ASN SEQRES 13 A 366 VAL ALA THR ALA GLU GLY ALA ARG ALA LEU ILE GLU ALA SEQRES 14 A 366 GLY VAL SER ALA VAL LYS VAL GLY ILE GLY PRO GLY SER SEQRES 15 A 366 ILE CYS THR THR ARG ILE VAL THR GLY VAL GLY VAL PRO SEQRES 16 A 366 GLN ILE THR ALA ILE ALA ASP ALA ALA GLY VAL ALA ASN SEQRES 17 A 366 GLU TYR GLY ILE PRO VAL ILE ALA ASP GLY GLY ILE ARG SEQRES 18 A 366 PHE SER GLY ASP ILE SER LYS ALA ILE ALA ALA GLY ALA SEQRES 19 A 366 SER CYS VAL MET VAL GLY SER MET PHE ALA GLY THR GLU SEQRES 20 A 366 GLU ALA PRO GLY GLU VAL ILE LEU TYR GLN GLY ARG SER SEQRES 21 A 366 TYR LYS ALA TYR ARG GLY MET GLY SER LEU GLY ALA MET SEQRES 22 A 366 SER LYS GLY SER SER ASP ARG TYR PHE GLN THR ASP ASN SEQRES 23 A 366 ALA ALA ASP LYS LEU VAL PRO GLU GLY ILE GLU GLY ARG SEQRES 24 A 366 ILE ALA TYR LYS GLY HIS LEU LYS GLU ILE ILE HIS GLN SEQRES 25 A 366 GLN MET GLY GLY LEU ARG SER CYS MET GLY LEU THR GLY SEQRES 26 A 366 SER ALA THR VAL GLU ASP LEU ARG THR LYS ALA GLN PHE SEQRES 27 A 366 VAL ARG ILE SER GLY ALA GLY MET LYS GLU SER HIS VAL SEQRES 28 A 366 HIS ASP VAL GLN ILE THR LYS GLU ALA PRO ASN TYR ARG SEQRES 29 A 366 LEU GLY HET XMP A 501 24 HET CL A 502 1 HET CL A 503 1 HETNAM XMP XANTHOSINE-5'-MONOPHOSPHATE HETNAM CL CHLORIDE ION HETSYN XMP 5-MONOPHOSPHATE-9-BETA-D-RIBOFURANOSYL XANTHINE FORMUL 2 XMP C10 H14 N4 O9 P 1+ FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *188(H2 O) HELIX 1 1 THR A 12 ASP A 14 5 3 HELIX 2 2 LEU A 26 ALA A 30 5 5 HELIX 3 3 GLU A 56 GLU A 66 1 11 HELIX 4 4 SER A 77 SER A 91 1 15 HELIX 5 5 ASN A 232 ALA A 242 1 11 HELIX 6 6 SER A 256 TYR A 270 1 15 HELIX 7 7 THR A 282 GLY A 293 1 12 HELIX 8 8 CYS A 307 GLY A 314 1 8 HELIX 9 9 PRO A 318 ASN A 331 1 14 HELIX 10 10 GLU A 332 GLY A 334 5 3 HELIX 11 11 PHE A 345 GLY A 356 1 12 HELIX 12 12 HIS A 428 GLY A 448 1 21 HELIX 13 13 THR A 451 ALA A 459 1 9 SHEET 1 A 2 VAL A 16 LEU A 18 0 SHEET 2 A 2 PHE A 461 ARG A 463 -1 O VAL A 462 N LEU A 17 SHEET 1 B 2 THR A 34 THR A 37 0 SHEET 2 B 2 ILE A 40 LEU A 42 -1 O ILE A 40 N LEU A 36 SHEET 1 C 9 MET A 46 SER A 48 0 SHEET 2 C 9 ILE A 69 ILE A 72 1 O ILE A 69 N SER A 48 SHEET 3 C 9 GLY A 223 VAL A 226 1 O ALA A 225 N ILE A 72 SHEET 4 C 9 VAL A 246 ILE A 249 1 O LEU A 248 N ALA A 224 SHEET 5 C 9 GLU A 274 VAL A 280 1 O ILE A 276 N LEU A 247 SHEET 6 C 9 ALA A 296 VAL A 299 1 O LYS A 298 N GLY A 277 SHEET 7 C 9 VAL A 337 ASP A 340 1 O ILE A 338 N VAL A 299 SHEET 8 C 9 CYS A 359 VAL A 362 1 O MET A 361 N ALA A 339 SHEET 9 C 9 MET A 46 SER A 48 1 N VAL A 47 O VAL A 360 SHEET 1 D 2 TYR A 384 ALA A 386 0 SHEET 2 D 2 ARG A 422 ALA A 424 -1 O ILE A 423 N LYS A 385 CISPEP 1 GLY A 278 ASN A 279 0 -2.54 SITE 1 AC1 22 ALA A 49 ASN A 279 GLY A 304 SER A 305 SITE 2 AC1 22 ILE A 306 CYS A 307 THR A 308 THR A 309 SITE 3 AC1 22 ASP A 340 GLY A 341 GLY A 342 GLY A 363 SITE 4 AC1 22 SER A 364 TYR A 387 GLY A 389 MET A 390 SITE 5 AC1 22 HOH A 610 HOH A 613 HOH A 617 HOH A 647 SITE 6 AC1 22 HOH A 663 HOH A 712 SITE 1 AC2 5 VAL A 280 ALA A 281 THR A 282 HOH A 634 SITE 2 AC2 5 HOH A 723 SITE 1 AC3 4 THR A 12 ARG A 310 GLN A 319 HOH A 687 CRYST1 106.900 106.900 65.489 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009355 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009355 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015270 0.00000