HEADER PROTEIN BINDING 27-JUN-14 4QQO TITLE CRYSTAL STRUCTURE OF C1QL3 MUTANT D205A COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT C1Q-LIKE PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: C1Q AND TUMOR NECROSIS FACTOR-RELATED PROTEIN 13, C1Q/TNF- COMPND 5 RELATED PROTEIN 13, CTRP13, GLIACOLIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: C1QL3, C1QL, CTRP13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS JELLY ROLL FOLD, C1Q, BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR G-PROTEIN KEYWDS 2 COUPLED RECEPTOR 3, EXTRACELLULAR, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.RESSL,A.T.BRUNGER REVDAT 3 28-FEB-24 4QQO 1 REMARK SEQADV LINK REVDAT 2 22-NOV-17 4QQO 1 REMARK REVDAT 1 22-APR-15 4QQO 0 JRNL AUTH S.RESSL,B.K.VU,S.VIVONA,D.C.MARTINELLI,T.C.SUDHOF, JRNL AUTH 2 A.T.BRUNGER JRNL TITL STRUCTURES OF C1Q-LIKE PROTEINS REVEAL UNIQUE FEATURES AMONG JRNL TITL 2 THE C1Q/TNF SUPERFAMILY. JRNL REF STRUCTURE V. 23 688 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 25752542 JRNL DOI 10.1016/J.STR.2015.01.019 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 6804 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7694 - 2.5580 0.86 3204 153 0.1448 0.1630 REMARK 3 2 2.5580 - 2.0310 0.88 3278 163 0.1587 0.1782 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1063 REMARK 3 ANGLE : 1.011 1444 REMARK 3 CHIRALITY : 0.037 150 REMARK 3 PLANARITY : 0.003 189 REMARK 3 DIHEDRAL : 14.214 379 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QQO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086391. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL; ASYMMETRIC REMARK 200 CUT 4.965 DEGS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6805 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.16100 REMARK 200 R SYM FOR SHELL (I) : 0.20900 REMARK 200 FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M BIS-TRIS, 25% PEG REMARK 280 3350, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.24000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.76847 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.91000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 34.24000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 19.76847 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 21.91000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 34.24000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 19.76847 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.91000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.53695 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 43.82000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 39.53695 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 43.82000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 39.53695 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 43.82000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -68.48000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -34.24000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -59.30542 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 202 LIES ON A SPECIAL POSITION. REMARK 375 MG MG A 203 LIES ON A SPECIAL POSITION. REMARK 375 MG MG A 204 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 361 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 THR A 2 REMARK 465 TYR A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 VAL A 6 REMARK 465 PRO A 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 123 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 327 O HOH A 359 1.97 REMARK 500 O HOH A 340 O HOH A 355 1.98 REMARK 500 O HOH A 319 O HOH A 404 2.02 REMARK 500 OD2 ASP A 65 O HOH A 305 2.06 REMARK 500 O HOH A 335 O HOH A 373 2.07 REMARK 500 O HOH A 384 O HOH A 417 2.07 REMARK 500 ND2 ASN A 36 O HOH A 330 2.10 REMARK 500 O HOH A 314 O HOH A 386 2.10 REMARK 500 O GLY A 120 O HOH A 355 2.12 REMARK 500 O HOH A 388 O HOH A 394 2.13 REMARK 500 O HOH A 313 O HOH A 334 2.14 REMARK 500 OG1 THR A 67 O HOH A 349 2.16 REMARK 500 O HOH A 380 O HOH A 399 2.19 REMARK 500 O THR A 42 O HOH A 386 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 23 O HOH A 330 6445 2.04 REMARK 500 O HOH A 378 O HOH A 378 2455 2.06 REMARK 500 NZ LYS A 117 O HOH A 360 6445 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 33 57.54 -165.46 REMARK 500 ASP A 65 39.65 -165.89 REMARK 500 THR A 67 83.85 173.57 REMARK 500 SER A 68 119.46 -168.44 REMARK 500 ASN A 76 -119.25 52.39 REMARK 500 GLN A 86 128.03 -179.17 REMARK 500 ALA A 88 -129.58 -76.79 REMARK 500 GLN A 90 22.62 49.84 REMARK 500 ASN A 123 47.40 -161.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 72 OD2 REMARK 620 2 HOH A 369 O 81.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD1 REMARK 620 2 HOH A 302 O 96.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 96 OG REMARK 620 2 HOH A 364 O 97.8 REMARK 620 3 HOH A 378 O 105.7 155.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QPY RELATED DB: PDB REMARK 900 RELATED ID: 4QQ2 RELATED DB: PDB REMARK 900 RELATED ID: 4QQH RELATED DB: PDB REMARK 900 RELATED ID: 4QQL RELATED DB: PDB REMARK 900 RELATED ID: 4QQP RELATED DB: PDB DBREF 4QQO A 1 137 UNP Q9ESN4 C1QL3_MOUSE 119 255 SEQADV 4QQO ALA A 87 UNP Q9ESN4 ASP 205 ENGINEERED MUTATION SEQRES 1 A 137 ALA THR TYR SER THR VAL PRO LYS ILE ALA PHE TYR ALA SEQRES 2 A 137 GLY LEU LYS ARG GLN HIS GLU GLY TYR GLU VAL LEU LYS SEQRES 3 A 137 PHE ASP ASP VAL VAL THR ASN LEU GLY ASN HIS TYR ASP SEQRES 4 A 137 PRO THR THR GLY LYS PHE THR CYS SER ILE PRO GLY ILE SEQRES 5 A 137 TYR PHE PHE THR TYR HIS VAL LEU MET ARG GLY GLY ASP SEQRES 6 A 137 GLY THR SER MET TRP ALA ASP LEU CYS LYS ASN ASN GLN SEQRES 7 A 137 VAL ARG ALA SER ALA ILE ALA GLN ALA ALA ASP GLN ASN SEQRES 8 A 137 TYR ASP TYR ALA SER ASN SER VAL VAL LEU HIS LEU GLU SEQRES 9 A 137 PRO GLY ASP GLU VAL TYR ILE LYS LEU ASP GLY GLY LYS SEQRES 10 A 137 ALA HIS GLY GLY ASN ASN ASN LYS TYR SER THR PHE SER SEQRES 11 A 137 GLY PHE ILE ILE TYR ALA ASP HET MG A 201 1 HET MG A 202 1 HET MG A 203 1 HET MG A 204 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG 4(MG 2+) FORMUL 6 HOH *117(H2 O) HELIX 1 1 GLY A 35 HIS A 37 5 3 SHEET 1 A 6 HIS A 19 GLU A 20 0 SHEET 2 A 6 LYS A 117 HIS A 119 -1 O ALA A 118 N HIS A 19 SHEET 3 A 6 GLY A 51 MET A 61 -1 N LEU A 60 O HIS A 119 SHEET 4 A 6 THR A 128 ALA A 136 -1 O ILE A 134 N ILE A 52 SHEET 5 A 6 ALA A 10 GLY A 14 -1 N ALA A 13 O PHE A 129 SHEET 6 A 6 ASP A 29 LEU A 34 -1 O VAL A 31 N TYR A 12 SHEET 1 B 4 HIS A 19 GLU A 20 0 SHEET 2 B 4 LYS A 117 HIS A 119 -1 O ALA A 118 N HIS A 19 SHEET 3 B 4 GLY A 51 MET A 61 -1 N LEU A 60 O HIS A 119 SHEET 4 B 4 ASP A 93 LEU A 103 -1 O LEU A 101 N TYR A 53 SHEET 1 C 4 GLU A 23 LEU A 25 0 SHEET 2 C 4 GLU A 108 ASP A 114 -1 O LEU A 113 N GLU A 23 SHEET 3 C 4 MET A 69 LYS A 75 -1 N CYS A 74 O TYR A 110 SHEET 4 C 4 GLN A 78 ALA A 81 -1 O GLN A 78 N LYS A 75 SHEET 1 D 4 PHE A 45 THR A 46 0 SHEET 2 D 4 GLU A 108 ASP A 114 -1 O VAL A 109 N PHE A 45 SHEET 3 D 4 MET A 69 LYS A 75 -1 N CYS A 74 O TYR A 110 SHEET 4 D 4 ILE A 84 ALA A 85 -1 O ALA A 85 N MET A 69 LINK OD2 ASP A 72 MG MG A 201 1555 1555 2.47 LINK OD2 ASP A 93 MG MG A 202 1555 1555 2.14 LINK OD1 ASP A 93 MG MG A 204 1555 1555 2.05 LINK OG BSER A 96 MG MG A 203 1555 1555 2.83 LINK MG MG A 201 O HOH A 369 1555 1555 2.83 LINK MG MG A 203 O HOH A 364 1555 1555 2.87 LINK MG MG A 203 O HOH A 378 1555 1555 2.07 LINK MG MG A 204 O HOH A 302 1555 1555 2.66 SITE 1 AC1 4 ASP A 72 SER A 82 TYR A 126 HOH A 369 SITE 1 AC2 1 ASP A 93 SITE 1 AC3 3 SER A 96 HOH A 364 HOH A 378 SITE 1 AC4 2 ASP A 93 HOH A 302 CRYST1 68.480 68.480 65.730 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014603 0.008431 0.000000 0.00000 SCALE2 0.000000 0.016862 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015214 0.00000