HEADER PROTEIN BINDING 27-JUN-14 4QQP TITLE CRYSTAL STRUCTURE OF C1QL3 MUTANT D207A COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT C1Q-LIKE PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: C1Q AND TUMOR NECROSIS FACTOR-RELATED PROTEIN 13, C1Q/TNF- COMPND 5 RELATED PROTEIN 13, CTRP13, GLIACOLIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: C1QL3, C1QL, CTRP13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS JELLY ROLL FOLD, C1Q, BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR G-PROTEIN KEYWDS 2 COUPLED RECEPTOR 3, EXTRACELLULAR, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.RESSL,A.T.BRUNGER REVDAT 4 28-FEB-24 4QQP 1 REMARK SEQADV LINK REVDAT 3 22-NOV-17 4QQP 1 REMARK REVDAT 2 06-MAY-15 4QQP 1 JRNL REVDAT 1 15-APR-15 4QQP 0 JRNL AUTH S.RESSL,B.K.VU,S.VIVONA,D.C.MARTINELLI,T.C.SUDHOF, JRNL AUTH 2 A.T.BRUNGER JRNL TITL STRUCTURES OF C1Q-LIKE PROTEINS REVEAL UNIQUE FEATURES AMONG JRNL TITL 2 THE C1Q/TNF SUPERFAMILY. JRNL REF STRUCTURE V. 23 688 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 25752542 JRNL DOI 10.1016/J.STR.2015.01.019 REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 3 NUMBER OF REFLECTIONS : 22274 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1148 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7415 - 2.9278 0.83 2580 115 0.1718 0.1985 REMARK 3 2 2.9278 - 2.3239 0.87 2595 129 0.1767 0.2020 REMARK 3 3 2.3239 - 2.0301 0.90 2614 156 0.1574 0.1995 REMARK 3 4 2.0301 - 1.8445 0.89 2624 141 0.1597 0.1924 REMARK 3 5 1.8445 - 1.7123 0.92 2708 144 0.1643 0.2107 REMARK 3 6 1.7123 - 1.6113 0.92 2658 158 0.1719 0.1859 REMARK 3 7 1.6113 - 1.5306 0.92 2678 145 0.1927 0.2006 REMARK 3 8 1.5306 - 1.4640 0.92 2669 160 0.2245 0.2664 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1063 REMARK 3 ANGLE : 1.144 1444 REMARK 3 CHIRALITY : 0.054 150 REMARK 3 PLANARITY : 0.006 189 REMARK 3 DIHEDRAL : 12.617 379 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 8:16) REMARK 3 ORIGIN FOR THE GROUP (A): 45.6335 55.2217 22.5154 REMARK 3 T TENSOR REMARK 3 T11: 0.0689 T22: 0.0475 REMARK 3 T33: 0.0083 T12: 0.0069 REMARK 3 T13: 0.0128 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.2782 L22: 1.1892 REMARK 3 L33: 3.1719 L12: 0.1218 REMARK 3 L13: 0.0736 L23: -0.2498 REMARK 3 S TENSOR REMARK 3 S11: 0.0306 S12: -0.0065 S13: -0.0247 REMARK 3 S21: -0.0057 S22: -0.0074 S23: -0.0082 REMARK 3 S31: 0.1206 S32: 0.0611 S33: 0.1180 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 17:22) REMARK 3 ORIGIN FOR THE GROUP (A): 54.7839 55.1901 39.4650 REMARK 3 T TENSOR REMARK 3 T11: 0.0425 T22: 0.1084 REMARK 3 T33: 0.1583 T12: 0.0139 REMARK 3 T13: -0.0220 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 6.3991 L22: 3.2037 REMARK 3 L33: 2.5591 L12: 1.6028 REMARK 3 L13: 2.0657 L23: 0.4859 REMARK 3 S TENSOR REMARK 3 S11: 0.0483 S12: 0.1214 S13: -0.3595 REMARK 3 S21: -0.0136 S22: 0.1138 S23: -0.0684 REMARK 3 S31: 0.1467 S32: 0.0637 S33: -0.1897 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 23:36) REMARK 3 ORIGIN FOR THE GROUP (A): 49.9139 53.5642 25.0277 REMARK 3 T TENSOR REMARK 3 T11: 0.0824 T22: 0.0555 REMARK 3 T33: 0.0982 T12: 0.0287 REMARK 3 T13: -0.0013 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.5043 L22: 1.4111 REMARK 3 L33: 1.9452 L12: 0.5123 REMARK 3 L13: 0.6162 L23: 0.7988 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: 0.0837 S13: -0.2760 REMARK 3 S21: -0.0204 S22: -0.0121 S23: -0.1289 REMARK 3 S31: 0.2430 S32: 0.1526 S33: -0.0989 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 37:56) REMARK 3 ORIGIN FOR THE GROUP (A): 51.9782 61.0833 19.0333 REMARK 3 T TENSOR REMARK 3 T11: 0.0547 T22: 0.0791 REMARK 3 T33: 0.0064 T12: 0.0037 REMARK 3 T13: 0.0084 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.9710 L22: 0.8450 REMARK 3 L33: 0.8585 L12: -0.1823 REMARK 3 L13: -0.5864 L23: -0.0773 REMARK 3 S TENSOR REMARK 3 S11: -0.0120 S12: 0.0187 S13: -0.0383 REMARK 3 S21: -0.0892 S22: 0.0138 S23: -0.1062 REMARK 3 S31: 0.0793 S32: 0.1418 S33: 0.1095 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 57:73) REMARK 3 ORIGIN FOR THE GROUP (A): 48.0279 61.7866 40.4273 REMARK 3 T TENSOR REMARK 3 T11: 0.0673 T22: 0.0882 REMARK 3 T33: 0.0337 T12: 0.0088 REMARK 3 T13: -0.0082 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.3270 L22: 0.9007 REMARK 3 L33: 0.9746 L12: 0.1549 REMARK 3 L13: -0.0749 L23: -0.0945 REMARK 3 S TENSOR REMARK 3 S11: 0.0349 S12: -0.1923 S13: -0.0810 REMARK 3 S21: 0.1914 S22: 0.0144 S23: -0.0657 REMARK 3 S31: 0.0638 S32: 0.0786 S33: 0.0394 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 74:82) REMARK 3 ORIGIN FOR THE GROUP (A): 56.0252 70.3893 26.9935 REMARK 3 T TENSOR REMARK 3 T11: 0.0568 T22: 0.1153 REMARK 3 T33: 0.0701 T12: -0.0192 REMARK 3 T13: 0.0249 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 1.7072 L22: 0.7525 REMARK 3 L33: 0.4818 L12: -0.3552 REMARK 3 L13: -0.8830 L23: 0.3154 REMARK 3 S TENSOR REMARK 3 S11: 0.1075 S12: -0.0322 S13: 0.1112 REMARK 3 S21: -0.0921 S22: 0.0116 S23: -0.2242 REMARK 3 S31: -0.1638 S32: 0.1482 S33: -0.0235 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 83:99) REMARK 3 ORIGIN FOR THE GROUP (A): 43.3753 64.5177 41.2150 REMARK 3 T TENSOR REMARK 3 T11: 0.0689 T22: 0.0887 REMARK 3 T33: 0.0314 T12: 0.0048 REMARK 3 T13: 0.0001 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.5367 L22: 0.9628 REMARK 3 L33: 1.6860 L12: 0.1635 REMARK 3 L13: -0.2039 L23: 0.0072 REMARK 3 S TENSOR REMARK 3 S11: 0.0096 S12: -0.1646 S13: -0.0672 REMARK 3 S21: 0.1614 S22: 0.0246 S23: 0.0227 REMARK 3 S31: 0.0235 S32: -0.0500 S33: -0.0246 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 100:107) REMARK 3 ORIGIN FOR THE GROUP (A): 54.1806 69.3255 16.2831 REMARK 3 T TENSOR REMARK 3 T11: 0.0794 T22: 0.1004 REMARK 3 T33: 0.0865 T12: -0.0151 REMARK 3 T13: 0.0432 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 2.7584 L22: 1.3292 REMARK 3 L33: 0.9593 L12: -1.8968 REMARK 3 L13: -1.0603 L23: 0.6115 REMARK 3 S TENSOR REMARK 3 S11: 0.0234 S12: 0.2235 S13: 0.0577 REMARK 3 S21: -0.1753 S22: -0.0173 S23: -0.2295 REMARK 3 S31: -0.0776 S32: 0.1326 S33: -0.0126 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 108:122) REMARK 3 ORIGIN FOR THE GROUP (A): 52.2357 59.4181 34.5331 REMARK 3 T TENSOR REMARK 3 T11: 0.0463 T22: 0.0757 REMARK 3 T33: 0.0780 T12: 0.0142 REMARK 3 T13: -0.0003 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 0.8622 L22: 1.1022 REMARK 3 L33: 3.5915 L12: -0.3859 REMARK 3 L13: 0.0848 L23: -0.4895 REMARK 3 S TENSOR REMARK 3 S11: -0.0504 S12: -0.0805 S13: -0.2202 REMARK 3 S21: 0.0164 S22: -0.0077 S23: 0.0369 REMARK 3 S31: 0.1315 S32: 0.0754 S33: -0.0103 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 123:137) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7713 60.5326 22.7105 REMARK 3 T TENSOR REMARK 3 T11: 0.0691 T22: 0.0597 REMARK 3 T33: -0.0029 T12: 0.0018 REMARK 3 T13: 0.0090 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.4934 L22: 0.3253 REMARK 3 L33: 1.0943 L12: -0.0764 REMARK 3 L13: -0.0698 L23: -0.0471 REMARK 3 S TENSOR REMARK 3 S11: -0.0444 S12: 0.0340 S13: -0.0213 REMARK 3 S21: -0.0526 S22: 0.0052 S23: 0.0157 REMARK 3 S31: 0.0814 S32: -0.0541 S33: -0.0951 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QQP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086392. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.008 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22351 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 45.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG400, 0.1 NA-ACETATE, 0.01M REMARK 280 CDCL2, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 38.29500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 22.10963 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 42.07000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 38.29500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 22.10963 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 42.07000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 38.29500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 22.10963 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 42.07000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 38.29500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 22.10963 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 42.07000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 38.29500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 22.10963 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 42.07000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 38.29500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 22.10963 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.07000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.21926 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 84.14000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 44.21926 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 84.14000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 44.21926 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 84.14000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 44.21926 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 84.14000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 44.21926 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 84.14000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 44.21926 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 84.14000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 114.88500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 66.32889 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 132.65777 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CD CD A 201 LIES ON A SPECIAL POSITION. REMARK 375 CD CD A 202 LIES ON A SPECIAL POSITION. REMARK 375 CD CD A 203 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 304 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 316 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 323 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 375 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 398 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 404 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 409 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 423 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 THR A 2 REMARK 465 TYR A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 VAL A 6 REMARK 465 PRO A 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 123 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 428 O HOH A 433 1.86 REMARK 500 O HOH A 362 O HOH A 432 2.03 REMARK 500 NE2 GLN A 78 O HOH A 429 2.12 REMARK 500 O LYS A 8 O HOH A 408 2.18 REMARK 500 O HOH A 353 O HOH A 430 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 411 O HOH A 429 12765 1.94 REMARK 500 O HOH A 364 O HOH A 364 3675 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 33 66.36 -157.36 REMARK 500 ASP A 65 86.00 -156.54 REMARK 500 ASN A 76 -114.51 53.72 REMARK 500 ASN A 122 -109.40 32.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 204 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 19 ND1 REMARK 620 2 GLU A 23 OE2 79.8 REMARK 620 3 HOH A 355 O 79.6 143.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 205 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 72 OD2 REMARK 620 2 ASP A 114 OD2 98.6 REMARK 620 3 HOH A 322 O 79.2 88.3 REMARK 620 4 HOH A 331 O 90.2 171.1 92.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 87 OD2 REMARK 620 2 HOH A 316 O 56.0 REMARK 620 3 HOH A 372 O 80.0 122.5 REMARK 620 4 HOH A 375 O 124.0 180.0 57.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD2 REMARK 620 2 HOH A 305 O 91.2 REMARK 620 3 HOH A 316 O 126.6 55.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 203 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD1 REMARK 620 2 HOH A 314 O 72.6 REMARK 620 3 HOH A 323 O 109.9 54.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QPY RELATED DB: PDB REMARK 900 RELATED ID: 4QQ2 RELATED DB: PDB REMARK 900 RELATED ID: 4QQH RELATED DB: PDB REMARK 900 RELATED ID: 4QQL RELATED DB: PDB REMARK 900 RELATED ID: 4QQO RELATED DB: PDB DBREF 4QQP A 1 137 UNP Q9ESN4 C1QL3_MOUSE 119 255 SEQADV 4QQP ALA A 89 UNP Q9ESN4 ASP 207 ENGINEERED MUTATION SEQRES 1 A 137 ALA THR TYR SER THR VAL PRO LYS ILE ALA PHE TYR ALA SEQRES 2 A 137 GLY LEU LYS ARG GLN HIS GLU GLY TYR GLU VAL LEU LYS SEQRES 3 A 137 PHE ASP ASP VAL VAL THR ASN LEU GLY ASN HIS TYR ASP SEQRES 4 A 137 PRO THR THR GLY LYS PHE THR CYS SER ILE PRO GLY ILE SEQRES 5 A 137 TYR PHE PHE THR TYR HIS VAL LEU MET ARG GLY GLY ASP SEQRES 6 A 137 GLY THR SER MET TRP ALA ASP LEU CYS LYS ASN ASN GLN SEQRES 7 A 137 VAL ARG ALA SER ALA ILE ALA GLN ASP ALA ALA GLN ASN SEQRES 8 A 137 TYR ASP TYR ALA SER ASN SER VAL VAL LEU HIS LEU GLU SEQRES 9 A 137 PRO GLY ASP GLU VAL TYR ILE LYS LEU ASP GLY GLY LYS SEQRES 10 A 137 ALA HIS GLY GLY ASN ASN ASN LYS TYR SER THR PHE SER SEQRES 11 A 137 GLY PHE ILE ILE TYR ALA ASP HET CD A 201 1 HET CD A 202 1 HET CD A 203 1 HET CD A 204 1 HET CD A 205 1 HET CD A 206 1 HETNAM CD CADMIUM ION FORMUL 2 CD 6(CD 2+) FORMUL 8 HOH *133(H2 O) HELIX 1 1 GLY A 35 HIS A 37 5 3 SHEET 1 A 5 ASP A 29 LEU A 34 0 SHEET 2 A 5 ALA A 10 GLY A 14 -1 N GLY A 14 O ASP A 29 SHEET 3 A 5 THR A 128 ALA A 136 -1 O GLY A 131 N PHE A 11 SHEET 4 A 5 GLY A 51 LEU A 60 -1 N ILE A 52 O ILE A 134 SHEET 5 A 5 TYR A 94 LEU A 103 -1 O LEU A 101 N TYR A 53 SHEET 1 B 3 HIS A 19 VAL A 24 0 SHEET 2 B 3 GLU A 108 ALA A 118 -1 O ALA A 118 N HIS A 19 SHEET 3 B 3 PHE A 45 THR A 46 -1 N PHE A 45 O VAL A 109 SHEET 1 C 4 HIS A 19 VAL A 24 0 SHEET 2 C 4 GLU A 108 ALA A 118 -1 O ALA A 118 N HIS A 19 SHEET 3 C 4 SER A 68 LYS A 75 -1 N ASP A 72 O LYS A 112 SHEET 4 C 4 GLN A 78 GLN A 86 -1 O ARG A 80 N LEU A 73 LINK ND1 HIS A 19 CD CD A 204 1555 1555 2.37 LINK OE2 GLU A 23 CD CD A 204 1555 1555 2.53 LINK OD2 ASP A 72 CD CD A 205 1555 1555 2.54 LINK OD2 ASP A 87 CD CD A 201 1555 1555 2.48 LINK OD2 ASP A 93 CD CD A 202 1555 1555 2.35 LINK OD1 ASP A 93 CD CD A 203 1555 1555 2.34 LINK OD2 ASP A 114 CD CD A 205 1555 1555 2.57 LINK CD CD A 201 O HOH A 316 1555 1555 2.49 LINK CD CD A 201 O HOH A 372 1555 1555 2.29 LINK CD CD A 201 O HOH A 375 1555 1555 2.60 LINK CD CD A 202 O HOH A 305 1555 1555 2.22 LINK CD CD A 202 O HOH A 316 1555 1555 2.54 LINK CD CD A 203 O HOH A 314 1555 1555 2.23 LINK CD CD A 203 O HOH A 323 1555 1555 2.59 LINK CD CD A 204 O HOH A 355 1555 1555 2.35 LINK CD CD A 205 O HOH A 322 1555 1555 2.41 LINK CD CD A 205 O HOH A 331 1555 1555 2.43 LINK CD CD A 206 O HOH A 392 1555 1555 2.62 SITE 1 AC1 4 ASP A 87 HOH A 316 HOH A 372 HOH A 375 SITE 1 AC2 3 ASP A 93 HOH A 305 HOH A 316 SITE 1 AC3 3 ASP A 93 HOH A 314 HOH A 323 SITE 1 AC4 6 HIS A 19 GLU A 20 GLU A 23 CD A 206 SITE 2 AC4 6 HOH A 302 HOH A 355 SITE 1 AC5 4 ASP A 72 ASP A 114 HOH A 322 HOH A 331 SITE 1 AC6 7 GLU A 23 LYS A 26 LYS A 117 CD A 204 SITE 2 AC6 7 HOH A 302 HOH A 377 HOH A 392 CRYST1 76.590 76.590 126.210 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013057 0.007538 0.000000 0.00000 SCALE2 0.000000 0.015076 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007923 0.00000