HEADER OXIDOREDUCTASE 28-JUN-14 4QQR TITLE STRUCTURAL INSIGHT INTO NUCLEOTIDE RHAMNOSE SYNTHASE/EPIMERASE- TITLE 2 REDUCTASE FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3,5-EPIMERASE/4-REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: F16P17.17 PROTEIN, PUTATIVE UNCHARACTERIZED PROTEIN COMPND 5 AT1G63000, UDP-4-KETO-6-DEOXY-D-GLUCOSE-3, 5-EPIMERASE-4-REDUCTASE 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT1G63000, ER, F16P17.17, NRS, NRS/ER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA BARREL, ROSSMANN FOLD, EPIMERASE-REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR X.HAN,X.LIU REVDAT 2 20-MAR-24 4QQR 1 REMARK LINK REVDAT 1 01-JUL-15 4QQR 0 JRNL AUTH X.HAN,X.LIU JRNL TITL STRUCTURAL INSIGHT INTO NUCLEOTIDE RHAMNOSE JRNL TITL 2 SYNTHASE/EPIMERASE-REDUCTASE FROM ARABIDOPSIS THALIANA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 34735 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7847 - 7.5965 0.84 1115 125 0.2068 0.2151 REMARK 3 2 7.5965 - 6.0354 0.98 1301 144 0.1903 0.2393 REMARK 3 3 6.0354 - 5.2742 0.99 1318 142 0.1760 0.2406 REMARK 3 4 5.2742 - 4.7927 0.99 1305 143 0.1569 0.2009 REMARK 3 5 4.7927 - 4.4496 0.97 1270 144 0.1351 0.1698 REMARK 3 6 4.4496 - 4.1875 0.97 1309 142 0.1489 0.1928 REMARK 3 7 4.1875 - 3.9780 0.98 1292 140 0.1681 0.2588 REMARK 3 8 3.9780 - 3.8049 0.95 1241 144 0.2060 0.2514 REMARK 3 9 3.8049 - 3.6586 0.94 729 77 0.2310 0.2298 REMARK 3 10 3.6586 - 3.5324 0.95 863 95 0.2002 0.3955 REMARK 3 11 3.5324 - 3.4220 1.00 1329 147 0.2048 0.3103 REMARK 3 12 3.4220 - 3.3242 1.00 1308 147 0.2063 0.3167 REMARK 3 13 3.3242 - 3.2367 1.00 1332 150 0.1945 0.2495 REMARK 3 14 3.2367 - 3.1578 1.00 1336 147 0.2309 0.3201 REMARK 3 15 3.1578 - 3.0860 1.00 1294 142 0.2154 0.3262 REMARK 3 16 3.0860 - 3.0204 1.00 1360 154 0.2468 0.3319 REMARK 3 17 3.0204 - 2.9600 1.00 1308 143 0.2396 0.3333 REMARK 3 18 2.9600 - 2.9041 1.00 1340 151 0.2475 0.3404 REMARK 3 19 2.9041 - 2.8523 1.00 1316 150 0.2416 0.3567 REMARK 3 20 2.8523 - 2.8039 1.00 1309 142 0.2545 0.3041 REMARK 3 21 2.8039 - 2.7587 1.00 1347 154 0.2597 0.3531 REMARK 3 22 2.7587 - 2.7163 0.98 1259 147 0.2645 0.3510 REMARK 3 23 2.7163 - 2.6763 0.95 1283 147 0.2531 0.3427 REMARK 3 24 2.6763 - 2.6386 0.92 1220 137 0.2711 0.3653 REMARK 3 25 2.6386 - 2.6030 0.89 1168 131 0.2668 0.4012 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 43.02 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.38510 REMARK 3 B22 (A**2) : 6.51560 REMARK 3 B33 (A**2) : -7.90080 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4358 REMARK 3 ANGLE : 1.179 5899 REMARK 3 CHIRALITY : 0.078 668 REMARK 3 PLANARITY : 0.007 748 REMARK 3 DIHEDRAL : 15.960 1599 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SF FILE CONTAINS FRIEDEL PAIRS UNDER REMARK 3 I/F_MINUS AND I/F_PLUS COLUMNS. REMARK 4 REMARK 4 4QQR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086394. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 4 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL12B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2826 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34737 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M AMMONIUM SULFATE, 0.1MM ZNCL2, REMARK 280 1MM DTT AND 0.1M HEPES PH 6.5. , VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.29450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.38700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.97150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.38700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.29450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.97150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -242.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 4 REMARK 465 ALA A 5 REMARK 465 ASN A 6 REMARK 465 GLY A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 GLN A 47 REMARK 465 LEU A 250A REMARK 465 GLU A 250B REMARK 465 GLN A 254 REMARK 465 ALA A 255 REMARK 465 LYS A 256 REMARK 465 VAL A 257 REMARK 465 ILE A 258 REMARK 465 VAL A 259 REMARK 465 ALA A 260 REMARK 465 LYS A 296 REMARK 465 THR A 297 REMARK 465 GLU A 298 REMARK 465 VAL A 299 REMARK 465 LYS A 300 REMARK 465 ALA A 301 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 ALA B 3 REMARK 465 ASP B 4 REMARK 465 ALA B 5 REMARK 465 ASN B 6 REMARK 465 GLY B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 SER B 10 REMARK 465 SER B 11 REMARK 465 THR B 71 REMARK 465 GLY B 72 REMARK 465 ARG B 73 REMARK 465 PRO B 74 REMARK 465 ASN B 75 REMARK 465 VAL B 76 REMARK 465 ASP B 77 REMARK 465 LEU B 251 REMARK 465 GLU B 252 REMARK 465 GLU B 253 REMARK 465 GLN B 254 REMARK 465 ALA B 255 REMARK 465 LYS B 256 REMARK 465 VAL B 257 REMARK 465 ILE B 258 REMARK 465 VAL B 259 REMARK 465 ALA B 260 REMARK 465 THR B 297 REMARK 465 GLU B 298 REMARK 465 VAL B 299 REMARK 465 LYS B 300 REMARK 465 ALA B 301 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 48 CG OD1 OD2 REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 ARG B 45 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 50 CG CD OE1 NE2 REMARK 470 LYS B 60 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 77 ZN ZN A 403 1.68 REMARK 500 OD1 ASN B 176 NH1 ARG B 178 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 74 C - N - CD ANGL. DEV. = -18.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 68 0.54 -56.36 REMARK 500 ASN A 75 -0.64 148.39 REMARK 500 TRP A 78 57.03 -104.29 REMARK 500 VAL A 91 -77.03 -98.74 REMARK 500 ALA A 112 -159.41 -147.02 REMARK 500 CYS A 115 36.52 -76.94 REMARK 500 MET A 168 63.70 29.50 REMARK 500 ASP A 192 74.14 50.24 REMARK 500 VAL B 91 -76.25 -107.28 REMARK 500 ALA B 112 -155.12 -130.66 REMARK 500 CYS B 115 36.21 -82.37 REMARK 500 SER B 121 -34.64 -38.97 REMARK 500 THR B 140 23.38 -149.75 REMARK 500 MET B 168 56.04 39.92 REMARK 500 GLU B 188 -72.21 -62.59 REMARK 500 ASP B 241 89.69 -168.22 REMARK 500 VAL B 290 -55.74 -123.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 79 SG REMARK 620 2 HIS A 82 ND1 128.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 123 NE2 REMARK 620 2 ASP A 135 OD2 80.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 159 OE2 REMARK 620 2 GLU B 80 OE2 113.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 79 SG REMARK 620 2 HIS B 82 ND1 84.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 115 SG REMARK 620 2 HOH B 526 O 102.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 123 NE2 REMARK 620 2 ASP B 135 OD2 90.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 404 DBREF 4QQR A 1 301 UNP Q9LQ04 Q9LQ04_ARATH 1 301 DBREF 4QQR B 1 301 UNP Q9LQ04 Q9LQ04_ARATH 1 301 SEQRES 1 A 301 MET VAL ALA ASP ALA ASN GLY SER SER SER SER SER PHE SEQRES 2 A 301 ASN PHE LEU ILE TYR GLY LYS THR GLY TRP ILE GLY GLY SEQRES 3 A 301 LEU LEU GLY LYS LEU CYS GLU ALA GLN GLY ILE THR TYR SEQRES 4 A 301 THR TYR GLY SER GLY ARG LEU GLN ASP ARG GLN SER ILE SEQRES 5 A 301 VAL ALA ASP ILE GLU SER VAL LYS PRO SER HIS VAL PHE SEQRES 6 A 301 ASN ALA ALA GLY VAL THR GLY ARG PRO ASN VAL ASP TRP SEQRES 7 A 301 CYS GLU SER HIS LYS VAL GLU THR ILE ARG THR ASN VAL SEQRES 8 A 301 ALA GLY THR LEU THR LEU ALA ASP ILE CYS ARG GLU LYS SEQRES 9 A 301 GLY LEU VAL LEU ILE ASN TYR ALA THR GLY CYS ILE PHE SEQRES 10 A 301 GLU TYR ASP SER GLY HIS PRO LEU GLY SER GLY ILE GLY SEQRES 11 A 301 PHE LYS GLU GLU ASP THR PRO ASN PHE THR GLY SER PHE SEQRES 12 A 301 TYR SER LYS THR LYS ALA MET VAL GLU GLU LEU LEU LYS SEQRES 13 A 301 ASN TYR GLU ASN VAL CYS THR LEU ARG VAL ARG MET PRO SEQRES 14 A 301 ILE SER SER ASP LEU THR ASN PRO ARG ASN PHE ILE THR SEQRES 15 A 301 LYS ILE ALA ARG TYR GLU LYS VAL VAL ASP ILE PRO ASN SEQRES 16 A 301 SER MET THR ILE LEU ASP GLU LEU LEU PRO ILE SER ILE SEQRES 17 A 301 GLU MET ALA LYS ARG ASN LEU THR GLY ILE TYR ASN PHE SEQRES 18 A 301 THR ASN PRO GLY VAL VAL SER HIS ASN GLU ILE LEU GLU SEQRES 19 A 301 MET TYR ARG ASP TYR ILE ASP PRO SER PHE THR TRP LYS SEQRES 20 A 301 ASN PHE THR LEU GLU GLU GLN ALA LYS VAL ILE VAL ALA SEQRES 21 A 301 PRO ARG SER ASN ASN GLU LEU ASP ALA THR LYS LEU LYS SEQRES 22 A 301 THR GLU PHE PRO GLU LEU MET SER ILE LYS GLU SER LEU SEQRES 23 A 301 ILE LYS PHE VAL PHE GLU PRO ASN LYS LYS THR GLU VAL SEQRES 24 A 301 LYS ALA SEQRES 1 B 301 MET VAL ALA ASP ALA ASN GLY SER SER SER SER SER PHE SEQRES 2 B 301 ASN PHE LEU ILE TYR GLY LYS THR GLY TRP ILE GLY GLY SEQRES 3 B 301 LEU LEU GLY LYS LEU CYS GLU ALA GLN GLY ILE THR TYR SEQRES 4 B 301 THR TYR GLY SER GLY ARG LEU GLN ASP ARG GLN SER ILE SEQRES 5 B 301 VAL ALA ASP ILE GLU SER VAL LYS PRO SER HIS VAL PHE SEQRES 6 B 301 ASN ALA ALA GLY VAL THR GLY ARG PRO ASN VAL ASP TRP SEQRES 7 B 301 CYS GLU SER HIS LYS VAL GLU THR ILE ARG THR ASN VAL SEQRES 8 B 301 ALA GLY THR LEU THR LEU ALA ASP ILE CYS ARG GLU LYS SEQRES 9 B 301 GLY LEU VAL LEU ILE ASN TYR ALA THR GLY CYS ILE PHE SEQRES 10 B 301 GLU TYR ASP SER GLY HIS PRO LEU GLY SER GLY ILE GLY SEQRES 11 B 301 PHE LYS GLU GLU ASP THR PRO ASN PHE THR GLY SER PHE SEQRES 12 B 301 TYR SER LYS THR LYS ALA MET VAL GLU GLU LEU LEU LYS SEQRES 13 B 301 ASN TYR GLU ASN VAL CYS THR LEU ARG VAL ARG MET PRO SEQRES 14 B 301 ILE SER SER ASP LEU THR ASN PRO ARG ASN PHE ILE THR SEQRES 15 B 301 LYS ILE ALA ARG TYR GLU LYS VAL VAL ASP ILE PRO ASN SEQRES 16 B 301 SER MET THR ILE LEU ASP GLU LEU LEU PRO ILE SER ILE SEQRES 17 B 301 GLU MET ALA LYS ARG ASN LEU THR GLY ILE TYR ASN PHE SEQRES 18 B 301 THR ASN PRO GLY VAL VAL SER HIS ASN GLU ILE LEU GLU SEQRES 19 B 301 MET TYR ARG ASP TYR ILE ASP PRO SER PHE THR TRP LYS SEQRES 20 B 301 ASN PHE THR LEU GLU GLU GLN ALA LYS VAL ILE VAL ALA SEQRES 21 B 301 PRO ARG SER ASN ASN GLU LEU ASP ALA THR LYS LEU LYS SEQRES 22 B 301 THR GLU PHE PRO GLU LEU MET SER ILE LYS GLU SER LEU SEQRES 23 B 301 ILE LYS PHE VAL PHE GLU PRO ASN LYS LYS THR GLU VAL SEQRES 24 B 301 LYS ALA HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET CL A 405 1 HET SO4 A 406 5 HET ZN B 401 1 HET ZN B 402 1 HET ZN B 403 1 HET CL B 404 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION FORMUL 3 ZN 7(ZN 2+) FORMUL 7 CL 2(CL 1-) FORMUL 8 SO4 O4 S 2- FORMUL 13 HOH *68(H2 O) HELIX 1 1 GLY A 22 GLN A 35 1 14 HELIX 2 2 ARG A 49 LYS A 60 1 12 HELIX 3 3 CYS A 79 VAL A 91 1 13 HELIX 4 4 VAL A 91 LYS A 104 1 14 HELIX 5 5 SER A 142 LYS A 156 1 15 HELIX 6 6 ASN A 179 TYR A 187 1 9 HELIX 7 7 ILE A 199 ARG A 213 1 15 HELIX 8 8 SER A 228 ILE A 240 1 13 HELIX 9 9 ALA A 269 PHE A 276 1 8 HELIX 10 10 SER A 281 VAL A 290 1 10 HELIX 11 11 PHE A 291 LYS A 295 5 5 HELIX 12 12 GLY B 22 GLN B 35 1 14 HELIX 13 13 ASP B 48 LYS B 60 1 13 HELIX 14 14 CYS B 79 VAL B 91 1 13 HELIX 15 15 VAL B 91 GLY B 105 1 15 HELIX 16 16 SER B 142 LYS B 156 1 15 HELIX 17 17 ASN B 179 ALA B 185 1 7 HELIX 18 18 ILE B 199 ARG B 213 1 15 HELIX 19 19 SER B 228 ASP B 241 1 14 HELIX 20 20 ALA B 269 PHE B 276 1 8 HELIX 21 21 SER B 281 VAL B 290 1 10 HELIX 22 22 PHE B 291 LYS B 295 5 5 SHEET 1 A 6 THR A 38 TYR A 41 0 SHEET 2 A 6 ASN A 14 TYR A 18 1 N ILE A 17 O THR A 40 SHEET 3 A 6 HIS A 63 ASN A 66 1 O PHE A 65 N LEU A 16 SHEET 4 A 6 VAL A 107 THR A 113 1 O ILE A 109 N ASN A 66 SHEET 5 A 6 VAL A 161 VAL A 166 1 O CYS A 162 N LEU A 108 SHEET 6 A 6 GLY A 217 ASN A 220 1 O TYR A 219 N THR A 163 SHEET 1 B 2 LYS A 189 VAL A 190 0 SHEET 2 B 2 LYS A 247 ASN A 248 1 O LYS A 247 N VAL A 190 SHEET 1 C 6 THR B 38 TYR B 41 0 SHEET 2 C 6 ASN B 14 TYR B 18 1 N ILE B 17 O THR B 40 SHEET 3 C 6 HIS B 63 ASN B 66 1 O PHE B 65 N LEU B 16 SHEET 4 C 6 VAL B 107 THR B 113 1 O ILE B 109 N ASN B 66 SHEET 5 C 6 VAL B 161 VAL B 166 1 O CYS B 162 N ASN B 110 SHEET 6 C 6 GLY B 217 ASN B 220 1 O TYR B 219 N ARG B 165 SHEET 1 D 2 LYS B 189 VAL B 190 0 SHEET 2 D 2 LYS B 247 ASN B 248 1 O LYS B 247 N VAL B 190 LINK SG CYS A 79 ZN ZN A 403 1555 1555 2.58 LINK ND1 HIS A 82 ZN ZN A 403 1555 1555 2.47 LINK SG CYS A 115 ZN ZN A 404 1555 1555 2.91 LINK NE2 HIS A 123 ZN ZN A 401 1555 1555 2.45 LINK OD2 ASP A 135 ZN ZN A 401 1555 1555 2.47 LINK OE2 GLU A 159 ZN ZN A 402 1555 1555 2.50 LINK ZN ZN A 402 OE2 GLU B 80 1555 1555 2.44 LINK SG CYS B 79 ZN ZN B 402 1555 1555 2.54 LINK ND1 HIS B 82 ZN ZN B 402 1555 1555 2.51 LINK SG CYS B 115 ZN ZN B 403 1555 1555 2.65 LINK NE2 HIS B 123 ZN ZN B 401 1555 1555 2.46 LINK OD2 ASP B 135 ZN ZN B 401 1555 1555 2.33 LINK ZN ZN B 403 O HOH B 526 1555 1555 2.52 CISPEP 1 GLY A 69 VAL A 70 0 -12.72 CISPEP 2 PRO A 74 ASN A 75 0 0.91 SITE 1 AC1 3 HIS A 123 ASP A 135 CL A 405 SITE 1 AC2 4 GLU A 159 GLU B 80 GLU B 234 ASP B 238 SITE 1 AC3 4 ASP A 77 CYS A 79 HIS A 82 ASP A 192 SITE 1 AC4 1 CYS A 115 SITE 1 AC5 3 HIS A 123 ASP A 135 ZN A 401 SITE 1 AC6 5 GLY A 22 TRP A 23 VAL A 70 THR A 71 SITE 2 AC6 5 ARG A 178 SITE 1 AC7 3 HIS B 123 ASP B 135 CL B 404 SITE 1 AC8 3 CYS B 79 HIS B 82 GLU B 231 SITE 1 AC9 2 CYS B 115 HOH B 526 SITE 1 BC1 2 ASP B 135 ZN B 401 CRYST1 56.589 61.943 176.774 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017671 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016144 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005657 0.00000