data_4QR9 # _entry.id 4QR9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4QR9 pdb_00004qr9 10.2210/pdb4qr9/pdb NDB NA3128 ? ? RCSB RCSB086412 ? ? WWPDB D_1000086412 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4QR9 _pdbx_database_status.recvd_initial_deposition_date 2014-06-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sanchez-Giraldo, R.' 1 'Acosta-Reyes, F.J.' 2 'Malarkey, C.S.' 3 'Saperas, N.' 4 'Churchill, M.E.A.' 5 'Campos, J.L.' 6 # _citation.id primary _citation.title 'Two high-mobility group box domains act together to underwind and kink DNA.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 71 _citation.page_first 1423 _citation.page_last 1432 _citation.year 2015 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26143914 _citation.pdbx_database_id_DOI 10.1107/S1399004715007452 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sanchez-Giraldo, R.' 1 ? primary 'Acosta-Reyes, F.J.' 2 ? primary 'Malarkey, C.S.' 3 ? primary 'Saperas, N.' 4 ? primary 'Churchill, M.E.' 5 ? primary 'Campos, J.L.' 6 ? # _cell.entry_id 4QR9 _cell.length_a 42.751 _cell.length_b 84.170 _cell.length_c 94.227 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4QR9 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'High mobility group protein B1' 8949.302 2 ? ? 'Residues 8-81' ? 2 polymer syn ;DNA (5'-D(*AP*TP*AP*TP*CP*GP*AP*TP*AP*T)-3') ; 3043.029 4 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 115 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Amphoterin, Heparin-binding protein p30, High mobility group protein 1, HMG-1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GSKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP GSKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP A,B ? 2 polydeoxyribonucleotide no no '(DA)(DT)(DA)(DT)(DC)(DG)(DA)(DT)(DA)(DT)' ATATCGATAT C,D,E,F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 LYS n 1 4 PRO n 1 5 ARG n 1 6 GLY n 1 7 LYS n 1 8 MET n 1 9 SER n 1 10 SER n 1 11 TYR n 1 12 ALA n 1 13 PHE n 1 14 PHE n 1 15 VAL n 1 16 GLN n 1 17 THR n 1 18 CYS n 1 19 ARG n 1 20 GLU n 1 21 GLU n 1 22 HIS n 1 23 LYS n 1 24 LYS n 1 25 LYS n 1 26 HIS n 1 27 PRO n 1 28 ASP n 1 29 ALA n 1 30 SER n 1 31 VAL n 1 32 ASN n 1 33 PHE n 1 34 SER n 1 35 GLU n 1 36 PHE n 1 37 SER n 1 38 LYS n 1 39 LYS n 1 40 CYS n 1 41 SER n 1 42 GLU n 1 43 ARG n 1 44 TRP n 1 45 LYS n 1 46 THR n 1 47 MET n 1 48 SER n 1 49 ALA n 1 50 LYS n 1 51 GLU n 1 52 LYS n 1 53 GLY n 1 54 LYS n 1 55 PHE n 1 56 GLU n 1 57 ASP n 1 58 MET n 1 59 ALA n 1 60 LYS n 1 61 ALA n 1 62 ASP n 1 63 LYS n 1 64 ALA n 1 65 ARG n 1 66 TYR n 1 67 GLU n 1 68 ARG n 1 69 GLU n 1 70 MET n 1 71 LYS n 1 72 THR n 1 73 TYR n 1 74 ILE n 1 75 PRO n 1 76 PRO n 2 1 DA n 2 2 DT n 2 3 DA n 2 4 DT n 2 5 DC n 2 6 DG n 2 7 DA n 2 8 DT n 2 9 DA n 2 10 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'brown rat,rat,rats' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Hmgb1, Hmg-1, Hmg1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta(DE3)pLySS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX2T _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP HMGB1_RAT P63159 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 8 ? 2 PDB 4QR9 4QR9 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4QR9 A 3 ? 76 ? P63159 8 ? 81 ? 7 80 2 1 4QR9 B 3 ? 76 ? P63159 8 ? 81 ? 7 80 3 2 4QR9 C 1 ? 10 ? 4QR9 1 ? 10 ? 1 10 4 2 4QR9 D 1 ? 10 ? 4QR9 11 ? 20 ? 11 20 5 2 4QR9 E 1 ? 10 ? 4QR9 1 ? 10 ? 1 10 6 2 4QR9 F 1 ? 10 ? 4QR9 11 ? 20 ? 11 20 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4QR9 GLY A 1 ? UNP P63159 ? ? 'expression tag' 5 1 1 4QR9 SER A 2 ? UNP P63159 ? ? 'expression tag' 6 2 2 4QR9 GLY B 1 ? UNP P63159 ? ? 'expression tag' 5 3 2 4QR9 SER B 2 ? UNP P63159 ? ? 'expression tag' 6 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4QR9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.82 _exptl_crystal.density_percent_sol 56.37 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pdbx_details ;0.025M Sodium Cacodylate 0.020M Magnesium Chloride 2.5% MPD (equilibrated against 40% MPD), pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.pdbx_collection_date 2013-07-19 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Channel-cut Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97949 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALBA BEAMLINE XALOC' _diffrn_source.pdbx_synchrotron_site ALBA _diffrn_source.pdbx_synchrotron_beamline XALOC _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97949 # _reflns.entry_id 4QR9 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 42.12 _reflns.d_resolution_high 2.00 _reflns.number_obs 23441 _reflns.number_all 23702 _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs 0.113 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.025 _reflns.B_iso_Wilson_estimate 32.0 _reflns.pdbx_redundancy 7.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.000 _reflns_shell.d_res_low 2.070 _reflns_shell.percent_possible_all 93.5 _reflns_shell.Rmerge_I_obs 0.658 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.90 _reflns_shell.pdbx_redundancy 5.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2162 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4QR9 _refine.ls_number_reflns_obs 22219 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.12 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 98.78 _refine.ls_R_factor_obs 0.19868 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19675 _refine.ls_R_factor_R_free 0.23387 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1176 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.949 _refine.correlation_coeff_Fo_to_Fc_free 0.941 _refine.B_iso_mean 42.412 _refine.aniso_B[1][1] 2.43 _refine.aniso_B[2][2] -1.21 _refine.aniso_B[3][3] -1.22 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 1CKT' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.161 _refine.pdbx_overall_ESU_R_Free 0.150 _refine.overall_SU_ML 0.097 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 6.442 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1234 _refine_hist.pdbx_number_atoms_nucleic_acid 808 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 115 _refine_hist.number_atoms_total 2158 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 42.12 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.016 0.016 ? 2200 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.012 0.020 ? 1676 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.622 1.602 ? 3094 ? 'X-RAY DIFFRACTION' r_angle_other_deg 2.924 3.001 ? 3933 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 5.485 5.000 ? 154 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 32.956 22.881 ? 59 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 18.187 15.000 ? 269 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 18.229 15.000 ? 10 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.098 0.200 ? 279 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.012 0.020 ? 1872 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.004 0.020 ? 466 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id 1 A 3839 0.17 0.05 'interatomic distance' 1 ? ? ? ? ? ? 1 'X-RAY DIFFRACTION' 2 B 3839 0.17 0.05 'interatomic distance' 1 ? ? ? ? ? ? 2 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.001 _refine_ls_shell.d_res_low 2.053 _refine_ls_shell.number_reflns_R_work 1486 _refine_ls_shell.R_factor_R_work 0.279 _refine_ls_shell.percent_reflns_obs 90.39 _refine_ls_shell.R_factor_R_free 0.330 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 76 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1486 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 A 1 2 B 1 # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 0 A GLY 1 . A PRO 75 . A GLY 5 A PRO 79 0 ? 1 2 0 B GLY 1 . B PRO 75 . B GLY 5 B PRO 79 0 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 4QR9 _struct.title 'Crystal structure of two HMGB1 Box A domains cooperating to underwind and kink a DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4QR9 _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text ;HMG-box, HMGB1, Box A domain, High mobility group, DNA-binding, bend DNA, kink DNA, architectural factor, minor groove, chromatin, Nucleus, DNA BINDING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 9 ? HIS A 26 ? SER A 13 HIS A 30 1 ? 18 HELX_P HELX_P2 2 ASN A 32 ? MET A 47 ? ASN A 36 MET A 51 1 ? 16 HELX_P HELX_P3 3 SER A 48 ? THR A 72 ? SER A 52 THR A 76 1 ? 25 HELX_P HELX_P4 4 SER B 9 ? HIS B 26 ? SER B 13 HIS B 30 1 ? 18 HELX_P HELX_P5 5 ASN B 32 ? MET B 47 ? ASN B 36 MET B 51 1 ? 16 HELX_P HELX_P6 6 SER B 48 ? LYS B 71 ? SER B 52 LYS B 75 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 18 SG ? ? ? 1_555 A CYS 40 SG B ? A CYS 22 A CYS 44 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc1 metalc ? ? J HOH . O ? ? ? 1_555 G MG . MG ? ? C HOH 107 D MG 101 1_555 ? ? ? ? ? ? ? 2.073 ? ? metalc2 metalc ? ? J HOH . O ? ? ? 1_555 G MG . MG ? ? C HOH 113 D MG 101 1_555 ? ? ? ? ? ? ? 2.157 ? ? metalc3 metalc ? ? J HOH . O ? ? ? 1_555 G MG . MG ? ? C HOH 116 D MG 101 1_555 ? ? ? ? ? ? ? 2.142 ? ? metalc4 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? D MG 101 D HOH 205 1_555 ? ? ? ? ? ? ? 2.012 ? ? metalc5 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? D MG 101 D HOH 226 1_555 ? ? ? ? ? ? ? 2.032 ? ? metalc6 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? D MG 101 D HOH 227 1_555 ? ? ? ? ? ? ? 2.137 ? ? hydrog1 hydrog ? ? C DA 1 N1 ? ? ? 1_555 D DT 10 N3 ? ? C DA 1 D DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DA 1 N6 ? ? ? 1_555 D DT 10 O4 ? ? C DA 1 D DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DT 2 N3 ? ? ? 1_555 D DA 9 N1 ? ? C DT 2 D DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DT 2 O4 ? ? ? 1_555 D DA 9 N6 ? ? C DT 2 D DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DA 3 N1 ? ? ? 1_555 D DT 8 N3 ? ? C DA 3 D DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DA 3 N6 ? ? ? 1_555 D DT 8 O4 ? ? C DA 3 D DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DT 4 N3 ? ? ? 1_555 D DA 7 N1 ? ? C DT 4 D DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DT 4 O4 ? ? ? 1_555 D DA 7 N6 ? ? C DT 4 D DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DC 5 N3 ? ? ? 1_555 D DG 6 N1 ? ? C DC 5 D DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DC 5 N4 ? ? ? 1_555 D DG 6 O6 ? ? C DC 5 D DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DC 5 O2 ? ? ? 1_555 D DG 6 N2 ? ? C DC 5 D DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D DC 5 N3 ? ? C DG 6 D DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D DC 5 O2 ? ? C DG 6 D DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DG 6 O6 ? ? ? 1_555 D DC 5 N4 ? ? C DG 6 D DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DA 7 N1 ? ? ? 1_555 D DT 4 N3 ? ? C DA 7 D DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DA 7 N6 ? ? ? 1_555 D DT 4 O4 ? ? C DA 7 D DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DT 8 N3 ? ? ? 1_555 D DA 3 N1 ? ? C DT 8 D DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DT 8 O4 ? ? ? 1_555 D DA 3 N6 ? ? C DT 8 D DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DA 9 N1 ? ? ? 1_555 D DT 2 N3 ? ? C DA 9 D DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DA 9 N6 ? ? ? 1_555 D DT 2 O4 ? ? C DA 9 D DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DT 10 N3 ? ? ? 1_555 D DA 1 N1 ? ? C DT 10 D DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DT 10 O4 ? ? ? 1_555 D DA 1 N6 ? ? C DT 10 D DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? E DA 1 N1 ? ? ? 1_555 F DT 10 N3 ? ? E DA 1 F DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? E DA 1 N6 ? ? ? 1_555 F DT 10 O4 ? ? E DA 1 F DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? E DT 2 N3 ? ? ? 1_555 F DA 9 N1 ? ? E DT 2 F DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? E DT 2 O4 ? ? ? 1_555 F DA 9 N6 ? ? E DT 2 F DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? E DA 3 N1 ? ? ? 1_555 F DT 8 N3 ? ? E DA 3 F DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? E DA 3 N6 ? ? ? 1_555 F DT 8 O4 ? ? E DA 3 F DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? E DT 4 N3 ? ? ? 1_555 F DA 7 N1 ? ? E DT 4 F DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? E DT 4 O4 ? ? ? 1_555 F DA 7 N6 ? ? E DT 4 F DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? E DC 5 N3 ? ? ? 1_555 F DG 6 N1 ? ? E DC 5 F DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? E DC 5 N4 ? ? ? 1_555 F DG 6 O6 ? ? E DC 5 F DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? E DC 5 O2 ? ? ? 1_555 F DG 6 N2 ? ? E DC 5 F DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? E DG 6 N1 ? ? ? 1_555 F DC 5 N3 ? ? E DG 6 F DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? E DG 6 N2 ? ? ? 1_555 F DC 5 O2 ? ? E DG 6 F DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? E DG 6 O6 ? ? ? 1_555 F DC 5 N4 ? ? E DG 6 F DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? E DA 7 N1 ? ? ? 1_555 F DT 4 N3 ? ? E DA 7 F DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? E DA 7 N6 ? ? ? 1_555 F DT 4 O4 ? ? E DA 7 F DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? E DT 8 N3 ? ? ? 1_555 F DA 3 N1 ? ? E DT 8 F DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? E DT 8 O4 ? ? ? 1_555 F DA 3 N6 ? ? E DT 8 F DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? E DA 9 N1 ? ? ? 1_555 F DT 2 N3 ? ? E DA 9 F DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? E DA 9 N6 ? ? ? 1_555 F DT 2 O4 ? ? E DA 9 F DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? E DT 10 N3 ? ? ? 1_555 F DA 1 N1 ? ? E DT 10 F DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? E DT 10 O4 ? ? ? 1_555 F DA 1 N6 ? ? E DT 10 F DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id D _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE MG D 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH J . ? HOH C 107 . ? 1_555 ? 2 AC1 6 HOH J . ? HOH C 113 . ? 1_555 ? 3 AC1 6 HOH J . ? HOH C 116 . ? 1_555 ? 4 AC1 6 HOH K . ? HOH D 205 . ? 1_555 ? 5 AC1 6 HOH K . ? HOH D 226 . ? 1_555 ? 6 AC1 6 HOH K . ? HOH D 227 . ? 1_555 ? # _database_PDB_matrix.entry_id 4QR9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4QR9 _atom_sites.fract_transf_matrix[1][1] 0.023391 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011881 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010613 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 5 5 GLY GLY A . n A 1 2 SER 2 6 6 SER SER A . n A 1 3 LYS 3 7 7 LYS LYS A . n A 1 4 PRO 4 8 8 PRO PRO A . n A 1 5 ARG 5 9 9 ARG ARG A . n A 1 6 GLY 6 10 10 GLY GLY A . n A 1 7 LYS 7 11 11 LYS LYS A . n A 1 8 MET 8 12 12 MET MET A . n A 1 9 SER 9 13 13 SER SER A . n A 1 10 SER 10 14 14 SER SER A . n A 1 11 TYR 11 15 15 TYR TYR A . n A 1 12 ALA 12 16 16 ALA ALA A . n A 1 13 PHE 13 17 17 PHE PHE A . n A 1 14 PHE 14 18 18 PHE PHE A . n A 1 15 VAL 15 19 19 VAL VAL A . n A 1 16 GLN 16 20 20 GLN GLN A . n A 1 17 THR 17 21 21 THR THR A . n A 1 18 CYS 18 22 22 CYS CYS A . n A 1 19 ARG 19 23 23 ARG ARG A . n A 1 20 GLU 20 24 24 GLU GLU A . n A 1 21 GLU 21 25 25 GLU GLU A . n A 1 22 HIS 22 26 26 HIS HIS A . n A 1 23 LYS 23 27 27 LYS LYS A . n A 1 24 LYS 24 28 28 LYS LYS A . n A 1 25 LYS 25 29 29 LYS LYS A . n A 1 26 HIS 26 30 30 HIS HIS A . n A 1 27 PRO 27 31 31 PRO PRO A . n A 1 28 ASP 28 32 32 ASP ASP A . n A 1 29 ALA 29 33 33 ALA ALA A . n A 1 30 SER 30 34 34 SER SER A . n A 1 31 VAL 31 35 35 VAL VAL A . n A 1 32 ASN 32 36 36 ASN ASN A . n A 1 33 PHE 33 37 37 PHE PHE A . n A 1 34 SER 34 38 38 SER SER A . n A 1 35 GLU 35 39 39 GLU GLU A . n A 1 36 PHE 36 40 40 PHE PHE A . n A 1 37 SER 37 41 41 SER SER A . n A 1 38 LYS 38 42 42 LYS LYS A . n A 1 39 LYS 39 43 43 LYS LYS A . n A 1 40 CYS 40 44 44 CYS CYS A . n A 1 41 SER 41 45 45 SER SER A . n A 1 42 GLU 42 46 46 GLU GLU A . n A 1 43 ARG 43 47 47 ARG ARG A . n A 1 44 TRP 44 48 48 TRP TRP A . n A 1 45 LYS 45 49 49 LYS LYS A . n A 1 46 THR 46 50 50 THR THR A . n A 1 47 MET 47 51 51 MET MET A . n A 1 48 SER 48 52 52 SER SER A . n A 1 49 ALA 49 53 53 ALA ALA A . n A 1 50 LYS 50 54 54 LYS LYS A . n A 1 51 GLU 51 55 55 GLU GLU A . n A 1 52 LYS 52 56 56 LYS LYS A . n A 1 53 GLY 53 57 57 GLY GLY A . n A 1 54 LYS 54 58 58 LYS LYS A . n A 1 55 PHE 55 59 59 PHE PHE A . n A 1 56 GLU 56 60 60 GLU GLU A . n A 1 57 ASP 57 61 61 ASP ASP A . n A 1 58 MET 58 62 62 MET MET A . n A 1 59 ALA 59 63 63 ALA ALA A . n A 1 60 LYS 60 64 64 LYS LYS A . n A 1 61 ALA 61 65 65 ALA ALA A . n A 1 62 ASP 62 66 66 ASP ASP A . n A 1 63 LYS 63 67 67 LYS LYS A . n A 1 64 ALA 64 68 68 ALA ALA A . n A 1 65 ARG 65 69 69 ARG ARG A . n A 1 66 TYR 66 70 70 TYR TYR A . n A 1 67 GLU 67 71 71 GLU GLU A . n A 1 68 ARG 68 72 72 ARG ARG A . n A 1 69 GLU 69 73 73 GLU GLU A . n A 1 70 MET 70 74 74 MET MET A . n A 1 71 LYS 71 75 75 LYS LYS A . n A 1 72 THR 72 76 76 THR THR A . n A 1 73 TYR 73 77 77 TYR TYR A . n A 1 74 ILE 74 78 78 ILE ILE A . n A 1 75 PRO 75 79 79 PRO PRO A . n A 1 76 PRO 76 80 ? ? ? A . n B 1 1 GLY 1 5 5 GLY GLY B . n B 1 2 SER 2 6 6 SER SER B . n B 1 3 LYS 3 7 7 LYS LYS B . n B 1 4 PRO 4 8 8 PRO PRO B . n B 1 5 ARG 5 9 9 ARG ARG B . n B 1 6 GLY 6 10 10 GLY GLY B . n B 1 7 LYS 7 11 11 LYS LYS B . n B 1 8 MET 8 12 12 MET MET B . n B 1 9 SER 9 13 13 SER SER B . n B 1 10 SER 10 14 14 SER SER B . n B 1 11 TYR 11 15 15 TYR TYR B . n B 1 12 ALA 12 16 16 ALA ALA B . n B 1 13 PHE 13 17 17 PHE PHE B . n B 1 14 PHE 14 18 18 PHE PHE B . n B 1 15 VAL 15 19 19 VAL VAL B . n B 1 16 GLN 16 20 20 GLN GLN B . n B 1 17 THR 17 21 21 THR THR B . n B 1 18 CYS 18 22 22 CYS CYS B . n B 1 19 ARG 19 23 23 ARG ARG B . n B 1 20 GLU 20 24 24 GLU GLU B . n B 1 21 GLU 21 25 25 GLU GLU B . n B 1 22 HIS 22 26 26 HIS HIS B . n B 1 23 LYS 23 27 27 LYS LYS B . n B 1 24 LYS 24 28 28 LYS LYS B . n B 1 25 LYS 25 29 29 LYS LYS B . n B 1 26 HIS 26 30 30 HIS HIS B . n B 1 27 PRO 27 31 31 PRO PRO B . n B 1 28 ASP 28 32 32 ASP ASP B . n B 1 29 ALA 29 33 33 ALA ALA B . n B 1 30 SER 30 34 34 SER SER B . n B 1 31 VAL 31 35 35 VAL VAL B . n B 1 32 ASN 32 36 36 ASN ASN B . n B 1 33 PHE 33 37 37 PHE PHE B . n B 1 34 SER 34 38 38 SER SER B . n B 1 35 GLU 35 39 39 GLU GLU B . n B 1 36 PHE 36 40 40 PHE PHE B . n B 1 37 SER 37 41 41 SER SER B . n B 1 38 LYS 38 42 42 LYS LYS B . n B 1 39 LYS 39 43 43 LYS LYS B . n B 1 40 CYS 40 44 44 CYS CYS B . n B 1 41 SER 41 45 45 SER SER B . n B 1 42 GLU 42 46 46 GLU GLU B . n B 1 43 ARG 43 47 47 ARG ARG B . n B 1 44 TRP 44 48 48 TRP TRP B . n B 1 45 LYS 45 49 49 LYS LYS B . n B 1 46 THR 46 50 50 THR THR B . n B 1 47 MET 47 51 51 MET MET B . n B 1 48 SER 48 52 52 SER SER B . n B 1 49 ALA 49 53 53 ALA ALA B . n B 1 50 LYS 50 54 54 LYS LYS B . n B 1 51 GLU 51 55 55 GLU GLU B . n B 1 52 LYS 52 56 56 LYS LYS B . n B 1 53 GLY 53 57 57 GLY GLY B . n B 1 54 LYS 54 58 58 LYS LYS B . n B 1 55 PHE 55 59 59 PHE PHE B . n B 1 56 GLU 56 60 60 GLU GLU B . n B 1 57 ASP 57 61 61 ASP ASP B . n B 1 58 MET 58 62 62 MET MET B . n B 1 59 ALA 59 63 63 ALA ALA B . n B 1 60 LYS 60 64 64 LYS LYS B . n B 1 61 ALA 61 65 65 ALA ALA B . n B 1 62 ASP 62 66 66 ASP ASP B . n B 1 63 LYS 63 67 67 LYS LYS B . n B 1 64 ALA 64 68 68 ALA ALA B . n B 1 65 ARG 65 69 69 ARG ARG B . n B 1 66 TYR 66 70 70 TYR TYR B . n B 1 67 GLU 67 71 71 GLU GLU B . n B 1 68 ARG 68 72 72 ARG ARG B . n B 1 69 GLU 69 73 73 GLU GLU B . n B 1 70 MET 70 74 74 MET MET B . n B 1 71 LYS 71 75 75 LYS LYS B . n B 1 72 THR 72 76 76 THR THR B . n B 1 73 TYR 73 77 77 TYR TYR B . n B 1 74 ILE 74 78 78 ILE ILE B . n B 1 75 PRO 75 79 79 PRO PRO B . n B 1 76 PRO 76 80 ? ? ? B . n C 2 1 DA 1 1 1 DA DA C . n C 2 2 DT 2 2 2 DT DT C . n C 2 3 DA 3 3 3 DA DA C . n C 2 4 DT 4 4 4 DT DT C . n C 2 5 DC 5 5 5 DC DC C . n C 2 6 DG 6 6 6 DG DG C . n C 2 7 DA 7 7 7 DA DA C . n C 2 8 DT 8 8 8 DT DT C . n C 2 9 DA 9 9 9 DA DA C . n C 2 10 DT 10 10 10 DT DT C . n D 2 1 DA 1 11 11 DA DA D . n D 2 2 DT 2 12 12 DT DT D . n D 2 3 DA 3 13 13 DA DA D . n D 2 4 DT 4 14 14 DT DT D . n D 2 5 DC 5 15 15 DC DC D . n D 2 6 DG 6 16 16 DG DG D . n D 2 7 DA 7 17 17 DA DA D . n D 2 8 DT 8 18 18 DT DT D . n D 2 9 DA 9 19 19 DA DA D . n D 2 10 DT 10 20 20 DT DT D . n E 2 1 DA 1 1 1 DA DA E . n E 2 2 DT 2 2 2 DT DT E . n E 2 3 DA 3 3 3 DA DA E . n E 2 4 DT 4 4 4 DT DT E . n E 2 5 DC 5 5 5 DC DC E . n E 2 6 DG 6 6 6 DG DG E . n E 2 7 DA 7 7 7 DA DA E . n E 2 8 DT 8 8 8 DT DT E . n E 2 9 DA 9 9 9 DA DA E . n E 2 10 DT 10 10 10 DT DT E . n F 2 1 DA 1 11 11 DA DA F . n F 2 2 DT 2 12 12 DT DT F . n F 2 3 DA 3 13 13 DA DA F . n F 2 4 DT 4 14 14 DT DT F . n F 2 5 DC 5 15 15 DC DC F . n F 2 6 DG 6 16 16 DG DG F . n F 2 7 DA 7 17 17 DA DA F . n F 2 8 DT 8 18 18 DT DT F . n F 2 9 DA 9 19 19 DA DA F . n F 2 10 DT 10 20 20 DT DT F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 MG 1 101 1 MG MG D . H 4 HOH 1 101 11 HOH HOH A . H 4 HOH 2 102 19 HOH HOH A . H 4 HOH 3 103 22 HOH HOH A . H 4 HOH 4 104 23 HOH HOH A . H 4 HOH 5 105 24 HOH HOH A . H 4 HOH 6 106 35 HOH HOH A . H 4 HOH 7 107 36 HOH HOH A . H 4 HOH 8 108 40 HOH HOH A . H 4 HOH 9 109 43 HOH HOH A . H 4 HOH 10 110 47 HOH HOH A . H 4 HOH 11 111 53 HOH HOH A . H 4 HOH 12 112 56 HOH HOH A . H 4 HOH 13 113 62 HOH HOH A . H 4 HOH 14 114 74 HOH HOH A . H 4 HOH 15 115 80 HOH HOH A . H 4 HOH 16 116 95 HOH HOH A . H 4 HOH 17 117 98 HOH HOH A . H 4 HOH 18 118 102 HOH HOH A . H 4 HOH 19 119 104 HOH HOH A . H 4 HOH 20 120 123 HOH HOH A . I 4 HOH 1 101 8 HOH HOH B . I 4 HOH 2 102 25 HOH HOH B . I 4 HOH 3 103 29 HOH HOH B . I 4 HOH 4 104 30 HOH HOH B . I 4 HOH 5 105 34 HOH HOH B . I 4 HOH 6 106 37 HOH HOH B . I 4 HOH 7 107 39 HOH HOH B . I 4 HOH 8 108 45 HOH HOH B . I 4 HOH 9 109 54 HOH HOH B . I 4 HOH 10 110 55 HOH HOH B . I 4 HOH 11 111 58 HOH HOH B . I 4 HOH 12 112 63 HOH HOH B . I 4 HOH 13 113 66 HOH HOH B . I 4 HOH 14 114 69 HOH HOH B . I 4 HOH 15 115 70 HOH HOH B . I 4 HOH 16 116 76 HOH HOH B . I 4 HOH 17 117 79 HOH HOH B . I 4 HOH 18 118 81 HOH HOH B . I 4 HOH 19 119 87 HOH HOH B . I 4 HOH 20 120 88 HOH HOH B . I 4 HOH 21 121 92 HOH HOH B . I 4 HOH 22 122 94 HOH HOH B . I 4 HOH 23 123 97 HOH HOH B . I 4 HOH 24 124 111 HOH HOH B . I 4 HOH 25 125 114 HOH HOH B . I 4 HOH 26 126 115 HOH HOH B . I 4 HOH 27 127 117 HOH HOH B . I 4 HOH 28 128 118 HOH HOH B . I 4 HOH 29 129 120 HOH HOH B . I 4 HOH 30 130 136 HOH HOH B . I 4 HOH 31 131 137 HOH HOH B . J 4 HOH 1 101 3 HOH HOH C . J 4 HOH 2 102 4 HOH HOH C . J 4 HOH 3 103 7 HOH HOH C . J 4 HOH 4 104 9 HOH HOH C . J 4 HOH 5 105 10 HOH HOH C . J 4 HOH 6 106 14 HOH HOH C . J 4 HOH 7 107 16 HOH HOH C . J 4 HOH 8 108 17 HOH HOH C . J 4 HOH 9 109 20 HOH HOH C . J 4 HOH 10 110 21 HOH HOH C . J 4 HOH 11 111 26 HOH HOH C . J 4 HOH 12 112 27 HOH HOH C . J 4 HOH 13 113 28 HOH HOH C . J 4 HOH 14 114 33 HOH HOH C . J 4 HOH 15 115 46 HOH HOH C . J 4 HOH 16 116 49 HOH HOH C . J 4 HOH 17 117 51 HOH HOH C . J 4 HOH 18 118 59 HOH HOH C . J 4 HOH 19 119 61 HOH HOH C . J 4 HOH 20 120 77 HOH HOH C . J 4 HOH 21 121 78 HOH HOH C . J 4 HOH 22 122 82 HOH HOH C . J 4 HOH 23 123 83 HOH HOH C . J 4 HOH 24 124 84 HOH HOH C . J 4 HOH 25 125 89 HOH HOH C . J 4 HOH 26 126 91 HOH HOH C . J 4 HOH 27 127 99 HOH HOH C . J 4 HOH 28 128 113 HOH HOH C . J 4 HOH 29 129 134 HOH HOH C . K 4 HOH 1 201 1 HOH HOH D . K 4 HOH 2 202 2 HOH HOH D . K 4 HOH 3 203 5 HOH HOH D . K 4 HOH 4 204 6 HOH HOH D . K 4 HOH 5 205 13 HOH HOH D . K 4 HOH 6 206 15 HOH HOH D . K 4 HOH 7 207 18 HOH HOH D . K 4 HOH 8 208 31 HOH HOH D . K 4 HOH 9 209 32 HOH HOH D . K 4 HOH 10 210 38 HOH HOH D . K 4 HOH 11 211 41 HOH HOH D . K 4 HOH 12 212 44 HOH HOH D . K 4 HOH 13 213 48 HOH HOH D . K 4 HOH 14 214 57 HOH HOH D . K 4 HOH 15 215 64 HOH HOH D . K 4 HOH 16 216 67 HOH HOH D . K 4 HOH 17 217 71 HOH HOH D . K 4 HOH 18 218 73 HOH HOH D . K 4 HOH 19 219 93 HOH HOH D . K 4 HOH 20 220 105 HOH HOH D . K 4 HOH 21 221 106 HOH HOH D . K 4 HOH 22 222 112 HOH HOH D . K 4 HOH 23 223 116 HOH HOH D . K 4 HOH 24 224 122 HOH HOH D . K 4 HOH 25 225 124 HOH HOH D . K 4 HOH 26 226 132 HOH HOH D . K 4 HOH 27 227 133 HOH HOH D . L 4 HOH 1 101 75 HOH HOH E . L 4 HOH 2 102 101 HOH HOH E . L 4 HOH 3 103 103 HOH HOH E . L 4 HOH 4 104 121 HOH HOH E . L 4 HOH 5 105 130 HOH HOH E . M 4 HOH 1 101 12 HOH HOH F . M 4 HOH 2 102 42 HOH HOH F . M 4 HOH 3 103 119 HOH HOH F . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? J HOH . ? C HOH 107 ? 1_555 MG ? G MG . ? D MG 101 ? 1_555 O ? J HOH . ? C HOH 113 ? 1_555 88.4 ? 2 O ? J HOH . ? C HOH 107 ? 1_555 MG ? G MG . ? D MG 101 ? 1_555 O ? J HOH . ? C HOH 116 ? 1_555 89.5 ? 3 O ? J HOH . ? C HOH 113 ? 1_555 MG ? G MG . ? D MG 101 ? 1_555 O ? J HOH . ? C HOH 116 ? 1_555 85.1 ? 4 O ? J HOH . ? C HOH 107 ? 1_555 MG ? G MG . ? D MG 101 ? 1_555 O ? K HOH . ? D HOH 205 ? 1_555 176.4 ? 5 O ? J HOH . ? C HOH 113 ? 1_555 MG ? G MG . ? D MG 101 ? 1_555 O ? K HOH . ? D HOH 205 ? 1_555 90.2 ? 6 O ? J HOH . ? C HOH 116 ? 1_555 MG ? G MG . ? D MG 101 ? 1_555 O ? K HOH . ? D HOH 205 ? 1_555 87.0 ? 7 O ? J HOH . ? C HOH 107 ? 1_555 MG ? G MG . ? D MG 101 ? 1_555 O ? K HOH . ? D HOH 226 ? 1_555 93.7 ? 8 O ? J HOH . ? C HOH 113 ? 1_555 MG ? G MG . ? D MG 101 ? 1_555 O ? K HOH . ? D HOH 226 ? 1_555 176.7 ? 9 O ? J HOH . ? C HOH 116 ? 1_555 MG ? G MG . ? D MG 101 ? 1_555 O ? K HOH . ? D HOH 226 ? 1_555 92.3 ? 10 O ? K HOH . ? D HOH 205 ? 1_555 MG ? G MG . ? D MG 101 ? 1_555 O ? K HOH . ? D HOH 226 ? 1_555 87.6 ? 11 O ? J HOH . ? C HOH 107 ? 1_555 MG ? G MG . ? D MG 101 ? 1_555 O ? K HOH . ? D HOH 227 ? 1_555 92.3 ? 12 O ? J HOH . ? C HOH 113 ? 1_555 MG ? G MG . ? D MG 101 ? 1_555 O ? K HOH . ? D HOH 227 ? 1_555 86.7 ? 13 O ? J HOH . ? C HOH 116 ? 1_555 MG ? G MG . ? D MG 101 ? 1_555 O ? K HOH . ? D HOH 227 ? 1_555 171.5 ? 14 O ? K HOH . ? D HOH 205 ? 1_555 MG ? G MG . ? D MG 101 ? 1_555 O ? K HOH . ? D HOH 227 ? 1_555 91.0 ? 15 O ? K HOH . ? D HOH 226 ? 1_555 MG ? G MG . ? D MG 101 ? 1_555 O ? K HOH . ? D HOH 227 ? 1_555 95.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-07-01 2 'Structure model' 1 1 2015-07-08 3 'Structure model' 1 2 2015-07-29 4 'Structure model' 1 3 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Experimental preparation' 4 3 'Structure model' 'Source and taxonomy' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ncs_dom_lim 8 4 'Structure model' struct_ref_seq_dif 9 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.value' 10 4 'Structure model' '_struct_conn.pdbx_dist_value' 11 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 12 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 18 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 4 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 24 4 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id' 25 4 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id' 26 4 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id' 27 4 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 28 4 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id' 29 4 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id' 30 4 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' 31 4 'Structure model' '_struct_ref_seq_dif.details' 32 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 33 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 34 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -8.8554 -22.7288 20.4295 0.0526 0.0914 0.0910 0.0129 -0.0372 0.0204 0.4021 0.6477 1.2846 0.1851 0.0694 -0.3296 0.0932 -0.0993 0.0061 0.0263 -0.0807 -0.1538 0.1243 0.0995 0.1894 'X-RAY DIFFRACTION' 2 ? refined -30.7182 -12.0619 9.8549 0.0407 0.0927 0.0648 0.0139 -0.0312 -0.0074 0.2471 0.0606 0.3977 -0.1036 0.0175 0.0673 -0.0198 -0.0076 0.0275 -0.0573 -0.0202 0.0242 -0.0165 -0.0614 -0.0962 'X-RAY DIFFRACTION' 3 ? refined -18.8661 -17.6308 11.9551 0.0317 0.0883 0.0585 0.0041 0.0070 -0.0034 0.3026 0.5917 0.6428 0.2962 0.3142 -0.0003 -0.0082 -0.0008 0.0090 0.0001 0.0048 -0.0109 -0.0162 0.0065 0.0034 'X-RAY DIFFRACTION' 4 ? refined -20.4637 -16.6418 18.4660 0.0308 0.0857 0.0566 0.0031 0.0017 -0.0112 0.2850 0.8225 0.8710 0.3212 0.3451 -0.0673 0.0100 -0.0037 -0.0063 -0.0009 0.0007 0.0032 0.0333 -0.0153 -0.0007 'X-RAY DIFFRACTION' 5 ? refined -12.5959 0.6902 -8.5549 0.1515 0.0822 0.1045 -0.0061 0.0609 0.0288 0.6501 0.1479 1.2088 0.2776 -0.3527 -0.3218 0.1732 -0.0399 -0.1333 -0.0737 0.0704 0.0483 0.0421 0.0463 0.1722 'X-RAY DIFFRACTION' 6 ? refined -12.7330 0.5379 -8.7752 0.1353 0.1306 0.0959 -0.0427 0.0402 0.0301 0.0176 0.0673 0.8615 -0.0198 0.0499 -0.2331 0.0792 0.0122 -0.0914 -0.0164 0.0006 0.0409 -0.0285 0.0504 0.1538 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 5 A 79 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 A 101 A 120 ? . . . . ? 'X-RAY DIFFRACTION' 3 2 B 5 B 79 ? . . . . ? 'X-RAY DIFFRACTION' 4 2 B 101 B 131 ? . . . . ? 'X-RAY DIFFRACTION' 5 3 C 1 C 10 ? . . . . ? 'X-RAY DIFFRACTION' 6 3 C 101 C 129 ? . . . . ? 'X-RAY DIFFRACTION' 7 4 D 11 D 20 ? . . . . ? 'X-RAY DIFFRACTION' 8 4 D 101 D 101 ? . . . . ? 'X-RAY DIFFRACTION' 9 4 D 201 D 227 ? . . . . ? 'X-RAY DIFFRACTION' 10 5 E 1 E 10 ? . . . . ? 'X-RAY DIFFRACTION' 11 5 E 101 E 105 ? . . . . ? 'X-RAY DIFFRACTION' 12 6 F 11 F 20 ? . . . . ? 'X-RAY DIFFRACTION' 13 6 F 101 F 103 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Xaloc 'data collection' Beamline ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.7.0029 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 80 ? A PRO 76 2 1 Y 1 B PRO 80 ? B PRO 76 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LYS N N N N 326 LYS CA C N S 327 LYS C C N N 328 LYS O O N N 329 LYS CB C N N 330 LYS CG C N N 331 LYS CD C N N 332 LYS CE C N N 333 LYS NZ N N N 334 LYS OXT O N N 335 LYS H H N N 336 LYS H2 H N N 337 LYS HA H N N 338 LYS HB2 H N N 339 LYS HB3 H N N 340 LYS HG2 H N N 341 LYS HG3 H N N 342 LYS HD2 H N N 343 LYS HD3 H N N 344 LYS HE2 H N N 345 LYS HE3 H N N 346 LYS HZ1 H N N 347 LYS HZ2 H N N 348 LYS HZ3 H N N 349 LYS HXT H N N 350 MET N N N N 351 MET CA C N S 352 MET C C N N 353 MET O O N N 354 MET CB C N N 355 MET CG C N N 356 MET SD S N N 357 MET CE C N N 358 MET OXT O N N 359 MET H H N N 360 MET H2 H N N 361 MET HA H N N 362 MET HB2 H N N 363 MET HB3 H N N 364 MET HG2 H N N 365 MET HG3 H N N 366 MET HE1 H N N 367 MET HE2 H N N 368 MET HE3 H N N 369 MET HXT H N N 370 MG MG MG N N 371 PHE N N N N 372 PHE CA C N S 373 PHE C C N N 374 PHE O O N N 375 PHE CB C N N 376 PHE CG C Y N 377 PHE CD1 C Y N 378 PHE CD2 C Y N 379 PHE CE1 C Y N 380 PHE CE2 C Y N 381 PHE CZ C Y N 382 PHE OXT O N N 383 PHE H H N N 384 PHE H2 H N N 385 PHE HA H N N 386 PHE HB2 H N N 387 PHE HB3 H N N 388 PHE HD1 H N N 389 PHE HD2 H N N 390 PHE HE1 H N N 391 PHE HE2 H N N 392 PHE HZ H N N 393 PHE HXT H N N 394 PRO N N N N 395 PRO CA C N S 396 PRO C C N N 397 PRO O O N N 398 PRO CB C N N 399 PRO CG C N N 400 PRO CD C N N 401 PRO OXT O N N 402 PRO H H N N 403 PRO HA H N N 404 PRO HB2 H N N 405 PRO HB3 H N N 406 PRO HG2 H N N 407 PRO HG3 H N N 408 PRO HD2 H N N 409 PRO HD3 H N N 410 PRO HXT H N N 411 SER N N N N 412 SER CA C N S 413 SER C C N N 414 SER O O N N 415 SER CB C N N 416 SER OG O N N 417 SER OXT O N N 418 SER H H N N 419 SER H2 H N N 420 SER HA H N N 421 SER HB2 H N N 422 SER HB3 H N N 423 SER HG H N N 424 SER HXT H N N 425 THR N N N N 426 THR CA C N S 427 THR C C N N 428 THR O O N N 429 THR CB C N R 430 THR OG1 O N N 431 THR CG2 C N N 432 THR OXT O N N 433 THR H H N N 434 THR H2 H N N 435 THR HA H N N 436 THR HB H N N 437 THR HG1 H N N 438 THR HG21 H N N 439 THR HG22 H N N 440 THR HG23 H N N 441 THR HXT H N N 442 TRP N N N N 443 TRP CA C N S 444 TRP C C N N 445 TRP O O N N 446 TRP CB C N N 447 TRP CG C Y N 448 TRP CD1 C Y N 449 TRP CD2 C Y N 450 TRP NE1 N Y N 451 TRP CE2 C Y N 452 TRP CE3 C Y N 453 TRP CZ2 C Y N 454 TRP CZ3 C Y N 455 TRP CH2 C Y N 456 TRP OXT O N N 457 TRP H H N N 458 TRP H2 H N N 459 TRP HA H N N 460 TRP HB2 H N N 461 TRP HB3 H N N 462 TRP HD1 H N N 463 TRP HE1 H N N 464 TRP HE3 H N N 465 TRP HZ2 H N N 466 TRP HZ3 H N N 467 TRP HH2 H N N 468 TRP HXT H N N 469 TYR N N N N 470 TYR CA C N S 471 TYR C C N N 472 TYR O O N N 473 TYR CB C N N 474 TYR CG C Y N 475 TYR CD1 C Y N 476 TYR CD2 C Y N 477 TYR CE1 C Y N 478 TYR CE2 C Y N 479 TYR CZ C Y N 480 TYR OH O N N 481 TYR OXT O N N 482 TYR H H N N 483 TYR H2 H N N 484 TYR HA H N N 485 TYR HB2 H N N 486 TYR HB3 H N N 487 TYR HD1 H N N 488 TYR HD2 H N N 489 TYR HE1 H N N 490 TYR HE2 H N N 491 TYR HH H N N 492 TYR HXT H N N 493 VAL N N N N 494 VAL CA C N S 495 VAL C C N N 496 VAL O O N N 497 VAL CB C N N 498 VAL CG1 C N N 499 VAL CG2 C N N 500 VAL OXT O N N 501 VAL H H N N 502 VAL H2 H N N 503 VAL HA H N N 504 VAL HB H N N 505 VAL HG11 H N N 506 VAL HG12 H N N 507 VAL HG13 H N N 508 VAL HG21 H N N 509 VAL HG22 H N N 510 VAL HG23 H N N 511 VAL HXT H N N 512 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LYS N CA sing N N 322 LYS N H sing N N 323 LYS N H2 sing N N 324 LYS CA C sing N N 325 LYS CA CB sing N N 326 LYS CA HA sing N N 327 LYS C O doub N N 328 LYS C OXT sing N N 329 LYS CB CG sing N N 330 LYS CB HB2 sing N N 331 LYS CB HB3 sing N N 332 LYS CG CD sing N N 333 LYS CG HG2 sing N N 334 LYS CG HG3 sing N N 335 LYS CD CE sing N N 336 LYS CD HD2 sing N N 337 LYS CD HD3 sing N N 338 LYS CE NZ sing N N 339 LYS CE HE2 sing N N 340 LYS CE HE3 sing N N 341 LYS NZ HZ1 sing N N 342 LYS NZ HZ2 sing N N 343 LYS NZ HZ3 sing N N 344 LYS OXT HXT sing N N 345 MET N CA sing N N 346 MET N H sing N N 347 MET N H2 sing N N 348 MET CA C sing N N 349 MET CA CB sing N N 350 MET CA HA sing N N 351 MET C O doub N N 352 MET C OXT sing N N 353 MET CB CG sing N N 354 MET CB HB2 sing N N 355 MET CB HB3 sing N N 356 MET CG SD sing N N 357 MET CG HG2 sing N N 358 MET CG HG3 sing N N 359 MET SD CE sing N N 360 MET CE HE1 sing N N 361 MET CE HE2 sing N N 362 MET CE HE3 sing N N 363 MET OXT HXT sing N N 364 PHE N CA sing N N 365 PHE N H sing N N 366 PHE N H2 sing N N 367 PHE CA C sing N N 368 PHE CA CB sing N N 369 PHE CA HA sing N N 370 PHE C O doub N N 371 PHE C OXT sing N N 372 PHE CB CG sing N N 373 PHE CB HB2 sing N N 374 PHE CB HB3 sing N N 375 PHE CG CD1 doub Y N 376 PHE CG CD2 sing Y N 377 PHE CD1 CE1 sing Y N 378 PHE CD1 HD1 sing N N 379 PHE CD2 CE2 doub Y N 380 PHE CD2 HD2 sing N N 381 PHE CE1 CZ doub Y N 382 PHE CE1 HE1 sing N N 383 PHE CE2 CZ sing Y N 384 PHE CE2 HE2 sing N N 385 PHE CZ HZ sing N N 386 PHE OXT HXT sing N N 387 PRO N CA sing N N 388 PRO N CD sing N N 389 PRO N H sing N N 390 PRO CA C sing N N 391 PRO CA CB sing N N 392 PRO CA HA sing N N 393 PRO C O doub N N 394 PRO C OXT sing N N 395 PRO CB CG sing N N 396 PRO CB HB2 sing N N 397 PRO CB HB3 sing N N 398 PRO CG CD sing N N 399 PRO CG HG2 sing N N 400 PRO CG HG3 sing N N 401 PRO CD HD2 sing N N 402 PRO CD HD3 sing N N 403 PRO OXT HXT sing N N 404 SER N CA sing N N 405 SER N H sing N N 406 SER N H2 sing N N 407 SER CA C sing N N 408 SER CA CB sing N N 409 SER CA HA sing N N 410 SER C O doub N N 411 SER C OXT sing N N 412 SER CB OG sing N N 413 SER CB HB2 sing N N 414 SER CB HB3 sing N N 415 SER OG HG sing N N 416 SER OXT HXT sing N N 417 THR N CA sing N N 418 THR N H sing N N 419 THR N H2 sing N N 420 THR CA C sing N N 421 THR CA CB sing N N 422 THR CA HA sing N N 423 THR C O doub N N 424 THR C OXT sing N N 425 THR CB OG1 sing N N 426 THR CB CG2 sing N N 427 THR CB HB sing N N 428 THR OG1 HG1 sing N N 429 THR CG2 HG21 sing N N 430 THR CG2 HG22 sing N N 431 THR CG2 HG23 sing N N 432 THR OXT HXT sing N N 433 TRP N CA sing N N 434 TRP N H sing N N 435 TRP N H2 sing N N 436 TRP CA C sing N N 437 TRP CA CB sing N N 438 TRP CA HA sing N N 439 TRP C O doub N N 440 TRP C OXT sing N N 441 TRP CB CG sing N N 442 TRP CB HB2 sing N N 443 TRP CB HB3 sing N N 444 TRP CG CD1 doub Y N 445 TRP CG CD2 sing Y N 446 TRP CD1 NE1 sing Y N 447 TRP CD1 HD1 sing N N 448 TRP CD2 CE2 doub Y N 449 TRP CD2 CE3 sing Y N 450 TRP NE1 CE2 sing Y N 451 TRP NE1 HE1 sing N N 452 TRP CE2 CZ2 sing Y N 453 TRP CE3 CZ3 doub Y N 454 TRP CE3 HE3 sing N N 455 TRP CZ2 CH2 doub Y N 456 TRP CZ2 HZ2 sing N N 457 TRP CZ3 CH2 sing Y N 458 TRP CZ3 HZ3 sing N N 459 TRP CH2 HH2 sing N N 460 TRP OXT HXT sing N N 461 TYR N CA sing N N 462 TYR N H sing N N 463 TYR N H2 sing N N 464 TYR CA C sing N N 465 TYR CA CB sing N N 466 TYR CA HA sing N N 467 TYR C O doub N N 468 TYR C OXT sing N N 469 TYR CB CG sing N N 470 TYR CB HB2 sing N N 471 TYR CB HB3 sing N N 472 TYR CG CD1 doub Y N 473 TYR CG CD2 sing Y N 474 TYR CD1 CE1 sing Y N 475 TYR CD1 HD1 sing N N 476 TYR CD2 CE2 doub Y N 477 TYR CD2 HD2 sing N N 478 TYR CE1 CZ doub Y N 479 TYR CE1 HE1 sing N N 480 TYR CE2 CZ sing Y N 481 TYR CE2 HE2 sing N N 482 TYR CZ OH sing N N 483 TYR OH HH sing N N 484 TYR OXT HXT sing N N 485 VAL N CA sing N N 486 VAL N H sing N N 487 VAL N H2 sing N N 488 VAL CA C sing N N 489 VAL CA CB sing N N 490 VAL CA HA sing N N 491 VAL C O doub N N 492 VAL C OXT sing N N 493 VAL CB CG1 sing N N 494 VAL CB CG2 sing N N 495 VAL CB HB sing N N 496 VAL CG1 HG11 sing N N 497 VAL CG1 HG12 sing N N 498 VAL CG1 HG13 sing N N 499 VAL CG2 HG21 sing N N 500 VAL CG2 HG22 sing N N 501 VAL CG2 HG23 sing N N 502 VAL OXT HXT sing N N 503 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4QR9 'double helix' 4QR9 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DA 1 1_555 D DT 10 1_555 -0.134 -0.158 0.007 -1.667 -11.232 -3.175 1 C_DA1:DT20_D C 1 ? D 20 ? 20 1 1 C DT 2 1_555 D DA 9 1_555 -0.120 -0.051 -0.071 6.285 -3.328 -0.353 2 C_DT2:DA19_D C 2 ? D 19 ? 20 1 1 C DA 3 1_555 D DT 8 1_555 0.103 -0.042 0.058 4.310 -11.687 11.532 3 C_DA3:DT18_D C 3 ? D 18 ? 20 1 1 C DT 4 1_555 D DA 7 1_555 -0.150 -0.091 -0.065 9.188 -7.228 -3.619 4 C_DT4:DA17_D C 4 ? D 17 ? 20 1 1 C DC 5 1_555 D DG 6 1_555 0.192 -0.049 -0.567 27.001 -5.774 -2.101 5 C_DC5:DG16_D C 5 ? D 16 ? 19 1 1 C DG 6 1_555 D DC 5 1_555 -0.156 -0.038 -0.678 -30.577 -6.952 -1.296 6 C_DG6:DC15_D C 6 ? D 15 ? 19 1 1 C DA 7 1_555 D DT 4 1_555 0.139 -0.033 -0.128 -13.951 -6.155 -1.604 7 C_DA7:DT14_D C 7 ? D 14 ? 20 1 1 C DT 8 1_555 D DA 3 1_555 -0.076 -0.017 0.140 -4.509 -12.089 9.303 8 C_DT8:DA13_D C 8 ? D 13 ? 20 1 1 C DA 9 1_555 D DT 2 1_555 0.210 -0.149 -0.007 -4.763 -4.583 1.870 9 C_DA9:DT12_D C 9 ? D 12 ? 20 1 1 C DT 10 1_555 D DA 1 1_555 -0.064 -0.076 -0.057 0.013 -9.414 -3.953 10 C_DT10:DA11_D C 10 ? D 11 ? 20 1 1 E DA 1 1_555 F DT 10 1_555 -0.037 -0.188 0.120 11.136 -10.642 -1.406 11 E_DA1:DT20_F E 1 ? F 20 ? 20 1 1 E DT 2 1_555 F DA 9 1_555 -0.182 -0.112 -0.278 13.058 -8.970 -0.206 12 E_DT2:DA19_F E 2 ? F 19 ? 20 1 1 E DA 3 1_555 F DT 8 1_555 0.159 -0.141 0.144 6.390 -15.770 -1.066 13 E_DA3:DT18_F E 3 ? F 18 ? 20 1 1 E DT 4 1_555 F DA 7 1_555 -0.010 -0.145 0.104 0.249 -13.924 -1.062 14 E_DT4:DA17_F E 4 ? F 17 ? 20 1 1 E DC 5 1_555 F DG 6 1_555 -0.058 -0.075 -0.014 -4.363 -9.423 -0.417 15 E_DC5:DG16_F E 5 ? F 16 ? 19 1 1 E DG 6 1_555 F DC 5 1_555 -0.148 -0.212 -0.173 -1.289 -8.600 -0.762 16 E_DG6:DC15_F E 6 ? F 15 ? 19 1 1 E DA 7 1_555 F DT 4 1_555 -0.048 -0.194 -0.043 -1.356 -10.126 -3.633 17 E_DA7:DT14_F E 7 ? F 14 ? 20 1 1 E DT 8 1_555 F DA 3 1_555 -0.054 -0.143 0.010 0.579 -13.814 0.294 18 E_DT8:DA13_F E 8 ? F 13 ? 20 1 1 E DA 9 1_555 F DT 2 1_555 -0.184 -0.202 -0.118 -9.927 -9.404 -1.008 19 E_DA9:DT12_F E 9 ? F 12 ? 20 1 1 E DT 10 1_555 F DA 1 1_555 -0.148 -0.106 0.175 -9.887 -10.051 -0.202 20 E_DT10:DA11_F E 10 ? F 11 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DA 1 1_555 D DT 10 1_555 C DT 2 1_555 D DA 9 1_555 0.629 -0.464 3.152 -0.221 0.466 29.975 -0.989 -1.260 3.140 0.901 0.428 29.979 1 CC_DA1DT2:DA19DT20_DD C 1 ? D 20 ? C 2 ? D 19 ? 1 C DT 2 1_555 D DA 9 1_555 C DA 3 1_555 D DT 8 1_555 0.603 -0.068 3.463 -2.228 3.765 35.923 -0.668 -1.301 3.396 6.076 3.596 36.180 2 CC_DT2DA3:DT18DA19_DD C 2 ? D 19 ? C 3 ? D 18 ? 1 C DA 3 1_555 D DT 8 1_555 C DT 4 1_555 D DA 7 1_555 -1.438 -0.736 3.260 0.831 8.431 27.475 -3.300 3.076 2.868 17.239 -1.698 28.728 3 CC_DA3DT4:DA17DT18_DD C 3 ? D 18 ? C 4 ? D 17 ? 1 C DT 4 1_555 D DA 7 1_555 C DC 5 1_555 D DG 6 1_555 0.031 0.089 3.069 6.776 7.889 24.814 -1.728 1.581 2.871 17.414 -14.956 26.874 4 CC_DT4DC5:DG16DA17_DD C 4 ? D 17 ? C 5 ? D 16 ? 1 C DC 5 1_555 D DG 6 1_555 C DG 6 1_555 D DC 5 1_555 0.087 0.758 6.647 0.714 74.835 4.858 -5.405 -0.014 1.220 86.826 -0.829 74.973 5 CC_DC5DG6:DC15DG16_DD C 5 ? D 16 ? C 6 ? D 15 ? 1 C DG 6 1_555 D DC 5 1_555 C DA 7 1_555 D DT 4 1_555 0.002 0.229 3.056 -7.191 7.970 24.835 -1.431 -1.737 2.879 17.524 15.809 27.022 6 CC_DG6DA7:DT14DC15_DD C 6 ? D 15 ? C 7 ? D 14 ? 1 C DA 7 1_555 D DT 4 1_555 C DT 8 1_555 D DA 3 1_555 1.305 -0.759 3.166 -1.755 8.357 27.275 -3.294 -3.014 2.730 17.195 3.610 28.557 7 CC_DA7DT8:DA13DT14_DD C 7 ? D 14 ? C 8 ? D 13 ? 1 C DT 8 1_555 D DA 3 1_555 C DA 9 1_555 D DT 2 1_555 -0.438 -0.178 3.428 1.783 2.529 35.200 -0.683 0.997 3.382 4.172 -2.942 35.331 8 CC_DT8DA9:DT12DA13_DD C 8 ? D 13 ? C 9 ? D 12 ? 1 C DA 9 1_555 D DT 2 1_555 C DT 10 1_555 D DA 1 1_555 -0.765 -0.597 3.268 0.951 0.566 26.999 -1.420 1.878 3.227 1.212 -2.037 27.021 9 CC_DA9DT10:DA11DT12_DD C 9 ? D 12 ? C 10 ? D 11 ? 1 C DT 10 1_555 D DA 1 1_555 E DA 1 1_555 F DT 10 1_555 0.157 0.836 3.316 -0.650 0.088 -22.056 -2.218 0.158 3.316 -0.230 -1.699 -22.066 10 CE_DT10DA1:DT20DA11_FD C 10 ? D 11 ? E 1 ? F 20 ? 1 E DA 1 1_555 F DT 10 1_555 E DT 2 1_555 F DA 9 1_555 0.193 -0.461 3.268 2.809 -0.153 29.308 -0.875 0.222 3.274 -0.302 -5.535 29.439 11 EE_DA1DT2:DA19DT20_FF E 1 ? F 20 ? E 2 ? F 19 ? 1 E DT 2 1_555 F DA 9 1_555 E DA 3 1_555 F DT 8 1_555 -0.429 0.591 3.499 -2.464 3.497 39.437 0.429 0.321 3.556 5.163 3.638 39.659 12 EE_DT2DA3:DT18DA19_FF E 2 ? F 19 ? E 3 ? F 18 ? 1 E DA 3 1_555 F DT 8 1_555 E DT 4 1_555 F DA 7 1_555 0.319 -0.529 3.387 1.021 1.417 32.954 -1.181 -0.382 3.370 2.496 -1.799 32.999 13 EE_DA3DT4:DA17DT18_FF E 3 ? F 18 ? E 4 ? F 17 ? 1 E DT 4 1_555 F DA 7 1_555 E DC 5 1_555 F DG 6 1_555 0.469 0.261 3.334 4.262 -1.430 42.583 0.505 -0.207 3.353 -1.963 -5.849 42.809 14 EE_DT4DC5:DG16DA17_FF E 4 ? F 17 ? E 5 ? F 16 ? 1 E DC 5 1_555 F DG 6 1_555 E DG 6 1_555 F DC 5 1_555 -0.634 0.220 3.284 -0.799 9.210 29.071 -1.452 1.044 3.217 17.789 1.544 30.476 15 EE_DC5DG6:DC15DG16_FF E 5 ? F 16 ? E 6 ? F 15 ? 1 E DG 6 1_555 F DC 5 1_555 E DA 7 1_555 F DT 4 1_555 -0.486 0.253 3.279 -4.380 3.103 36.350 -0.028 0.164 3.323 4.941 6.975 36.731 16 EE_DG6DA7:DT14DC15_FF E 6 ? F 15 ? E 7 ? F 14 ? 1 E DA 7 1_555 F DT 4 1_555 E DT 8 1_555 F DA 3 1_555 0.088 -0.387 3.264 0.033 -0.649 30.302 -0.610 -0.161 3.272 -1.241 -0.063 30.309 17 EE_DA7DT8:DA13DT14_FF E 7 ? F 14 ? E 8 ? F 13 ? 1 E DT 8 1_555 F DA 3 1_555 E DA 9 1_555 F DT 2 1_555 0.109 0.491 3.541 -0.009 5.958 39.189 -0.037 -0.162 3.574 8.821 0.013 39.622 18 EE_DT8DA9:DT12DA13_FF E 8 ? F 13 ? E 9 ? F 12 ? 1 E DA 9 1_555 F DT 2 1_555 E DT 10 1_555 F DA 1 1_555 0.068 -0.403 3.312 -1.977 -1.591 32.001 -0.440 -0.483 3.318 -2.880 3.579 32.099 19 EE_DA9DT10:DA11DT12_FF E 9 ? F 12 ? E 10 ? F 11 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1CKT _pdbx_initial_refinement_model.details 'PDB entry 1CKT' #