data_4QRL # _entry.id 4QRL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4QRL pdb_00004qrl 10.2210/pdb4qrl/pdb RCSB RCSB086424 ? ? WWPDB D_1000086424 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-417932 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4QRL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-07-01 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category CASP _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a hypothetical protein (BACUNI_01346) from Bacteroides uniformis ATCC 8492 at 1.79 A resolution' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4QRL _cell.length_a 48.851 _cell.length_b 48.851 _cell.length_c 78.451 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4QRL _symmetry.Int_Tables_number 154 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hypothetical protein' 13112.521 1 ? ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 3 ? ? ? ? 3 water nat water 18.015 112 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GC(MSE)NGGGDLAGKWQLRQYQYADGTSEKVDSVFYNFQKGSFSAICLLKDGGLTTFFGNYSLKGAEISIILLPESVND KNYDTYFGWPEGKCTFKVEDLSYSSLRLEYEGTKSIFRKF ; _entity_poly.pdbx_seq_one_letter_code_can ;GCMNGGGDLAGKWQLRQYQYADGTSEKVDSVFYNFQKGSFSAICLLKDGGLTTFFGNYSLKGAEISIILLPESVNDKNYD TYFGWPEGKCTFKVEDLSYSSLRLEYEGTKSIFRKF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-417932 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 CYS n 1 3 MSE n 1 4 ASN n 1 5 GLY n 1 6 GLY n 1 7 GLY n 1 8 ASP n 1 9 LEU n 1 10 ALA n 1 11 GLY n 1 12 LYS n 1 13 TRP n 1 14 GLN n 1 15 LEU n 1 16 ARG n 1 17 GLN n 1 18 TYR n 1 19 GLN n 1 20 TYR n 1 21 ALA n 1 22 ASP n 1 23 GLY n 1 24 THR n 1 25 SER n 1 26 GLU n 1 27 LYS n 1 28 VAL n 1 29 ASP n 1 30 SER n 1 31 VAL n 1 32 PHE n 1 33 TYR n 1 34 ASN n 1 35 PHE n 1 36 GLN n 1 37 LYS n 1 38 GLY n 1 39 SER n 1 40 PHE n 1 41 SER n 1 42 ALA n 1 43 ILE n 1 44 CYS n 1 45 LEU n 1 46 LEU n 1 47 LYS n 1 48 ASP n 1 49 GLY n 1 50 GLY n 1 51 LEU n 1 52 THR n 1 53 THR n 1 54 PHE n 1 55 PHE n 1 56 GLY n 1 57 ASN n 1 58 TYR n 1 59 SER n 1 60 LEU n 1 61 LYS n 1 62 GLY n 1 63 ALA n 1 64 GLU n 1 65 ILE n 1 66 SER n 1 67 ILE n 1 68 ILE n 1 69 LEU n 1 70 LEU n 1 71 PRO n 1 72 GLU n 1 73 SER n 1 74 VAL n 1 75 ASN n 1 76 ASP n 1 77 LYS n 1 78 ASN n 1 79 TYR n 1 80 ASP n 1 81 THR n 1 82 TYR n 1 83 PHE n 1 84 GLY n 1 85 TRP n 1 86 PRO n 1 87 GLU n 1 88 GLY n 1 89 LYS n 1 90 CYS n 1 91 THR n 1 92 PHE n 1 93 LYS n 1 94 VAL n 1 95 GLU n 1 96 ASP n 1 97 LEU n 1 98 SER n 1 99 TYR n 1 100 SER n 1 101 SER n 1 102 LEU n 1 103 ARG n 1 104 LEU n 1 105 GLU n 1 106 TYR n 1 107 GLU n 1 108 GLY n 1 109 THR n 1 110 LYS n 1 111 SER n 1 112 ILE n 1 113 PHE n 1 114 ARG n 1 115 LYS n 1 116 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BACUNI_01346, ZP_02069929.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides uniformis ATCC 8492' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 411479 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A7V1A8_BACUN _struct_ref.pdbx_db_accession A7V1A8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;CMNGGGDLAGKWQLRQYQYADGTSEKVDSVFYNFQKGSFSAICLLKDGGLTTFFGNYSLKGAEISIILLPESVNDKNYDT YFGWPEGKCTFKVEDLSYSSLRLEYEGTKSIFRKF ; _struct_ref.pdbx_align_begin 21 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4QRL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 116 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A7V1A8 _struct_ref_seq.db_align_beg 21 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 135 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 21 _struct_ref_seq.pdbx_auth_seq_align_end 135 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4QRL _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A7V1A8 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4QRL # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 40.31 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.pdbx_details ;0.2M calcium chloride, 20.0% 2-propanol, 10.0% 1,2-butanediol, 0.1M sodium acetate pH 4.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.pH 4.6 # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2013-07-02 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91837 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength 0.91837 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.limit_k_max ? _reflns.d_resolution_high 1.79 _reflns.observed_criterion_F_min ? _reflns.pdbx_netI_over_sigmaI 18.230 _reflns.observed_criterion_F_max ? _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.limit_l_max ? _reflns.limit_k_min ? _reflns.entry_id 4QRL _reflns.B_iso_Wilson_estimate 28.043 _reflns.percent_possible_obs 99.600 _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.limit_l_min ? _reflns.limit_h_min ? _reflns.R_free_details ? _reflns.number_all ? _reflns.d_resolution_low 39.225 _reflns.pdbx_redundancy 6.34 _reflns.number_obs 10664 _reflns.limit_h_max ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.790 1.850 6578 ? 986 0.725 2.43 ? ? 6.67 ? ? 99.900 1 1 1.850 1.930 7411 ? 1134 0.461 3.7 ? ? ? ? ? 99.600 2 1 1.930 2.020 6622 ? 1055 0.314 5.3 ? ? ? ? ? 99.400 3 1 2.020 2.120 6302 ? 995 0.209 8.0 ? ? ? ? ? 99.900 4 1 2.120 2.250 6843 ? 1023 0.163 10.5 ? ? ? ? ? 100.000 5 1 2.250 2.430 7233 ? 1100 0.129 13.1 ? ? ? ? ? 99.900 6 1 2.430 2.670 6294 ? 1036 0.091 17.9 ? ? ? ? ? 98.400 7 1 2.670 3.060 7206 ? 1091 0.058 28.2 ? ? ? ? ? 99.800 8 1 3.060 3.850 6283 ? 1079 0.037 41.0 ? ? ? ? ? 99.500 9 1 3.850 39.230 6816 ? 1165 0.027 47.5 ? ? ? ? ? 99.300 10 1 # _refine.ls_percent_reflns_R_free 4.7500 _refine.overall_SU_B ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_R_Free_selection_details RANDOM _refine.overall_FOM_free_R_set ? _refine.pdbx_data_cutoff_low_absF ? _refine.entry_id 4QRL _refine.aniso_B[2][3] 0.0000 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_ML ? _refine.pdbx_ls_sigma_I ? _refine.aniso_B[1][3] 0.0000 _refine.pdbx_stereochemistry_target_values ? _refine.aniso_B[3][3] -6.5906 _refine.occupancy_max 1.000 _refine.ls_number_restraints ? _refine.aniso_B[1][1] 3.2953 _refine.pdbx_overall_ESU_R ? _refine.ls_R_factor_obs 0.1727 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_starting_model ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.solvent_model_param_ksol ? _refine.pdbx_solvent_shrinkage_radii ? _refine.correlation_coeff_Fo_to_Fc 0.9636 _refine.ls_number_reflns_R_free 505 _refine.correlation_coeff_Fo_to_Fc_free 0.9302 _refine.pdbx_ls_sigma_F 0.000 _refine.ls_percent_reflns_obs 99.6200 _refine.ls_R_factor_R_work 0.1703 _refine.overall_SU_R_free ? _refine.ls_d_res_high 1.7900 _refine.pdbx_overall_ESU_R_Free ? _refine.B_iso_min 18.160 _refine.occupancy_min 0.350 _refine.B_iso_mean 33.9279 _refine.pdbx_stereochem_target_val_spec_case ? _refine.ls_R_factor_all ? _refine.aniso_B[2][2] 3.2953 _refine.B_iso_max 98.290 _refine.ls_d_res_low 39.225 _refine.pdbx_overall_phase_error ? _refine.solvent_model_details ? _refine.aniso_B[1][2] 0.0000 _refine.ls_R_factor_R_free 0.2199 _refine.ls_R_factor_R_free_error ? _refine.ls_number_reflns_obs 10638 _refine.overall_FOM_work_R_set ? _refine.ls_number_parameters ? _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. EDO MODELED WAS PRESENT IN CRYO CONDITION. 4. THE STRUCTURE WAS SOLVED BY MOLECULAR REPLACEMENT. ; _refine.ls_number_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.solvent_model_param_bsol ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4QRL _refine_analyze.Luzzati_coordinate_error_obs 0.207 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 888 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 112 _refine_hist.number_atoms_total 1012 _refine_hist.d_res_high 1.7900 _refine_hist.d_res_low 39.225 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 431 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 23 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 138 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 939 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 114 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 1137 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 939 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1263 1.000 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.720 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 2.700 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.7900 _refine_ls_shell.d_res_low 2.0000 _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.percent_reflns_obs 99.6200 _refine_ls_shell.number_reflns_R_work 2820 _refine_ls_shell.R_factor_all 0.1952 _refine_ls_shell.R_factor_R_work 0.1948 _refine_ls_shell.R_factor_R_free 0.2026 _refine_ls_shell.percent_reflns_R_free 4.6300 _refine_ls_shell.number_reflns_R_free 137 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2957 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.title 'Crystal structure of a lipocalin-like protein (BACUNI_01346) from Bacteroides uniformis ATCC 8492 at 1.79 A resolution' _struct.entry_id 4QRL _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y # _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;Lipocalin-like protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.entry_id 4QRL # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 70 ? ASN A 75 ? LEU A 89 ASN A 94 1 ? 6 HELX_P HELX_P2 2 ASN A 78 ? PHE A 83 ? ASN A 97 PHE A 102 1 ? 6 HELX_P HELX_P3 3 TRP A 85 ? GLU A 87 ? TRP A 104 GLU A 106 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 11 ? GLN A 19 ? GLY A 30 GLN A 38 A 2 SER A 25 ? GLN A 36 ? SER A 44 GLN A 55 A 3 SER A 39 ? LEU A 45 ? SER A 58 LEU A 64 A 4 LEU A 51 ? LYS A 61 ? LEU A 70 LYS A 80 A 5 GLU A 64 ? LEU A 69 ? GLU A 83 LEU A 88 A 6 LYS A 89 ? LEU A 97 ? LYS A 108 LEU A 116 A 7 SER A 101 ? TYR A 106 ? SER A 120 TYR A 125 A 8 THR A 109 ? LYS A 115 ? THR A 128 LYS A 134 A 9 GLY A 11 ? GLN A 19 ? GLY A 30 GLN A 38 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TRP A 13 ? N TRP A 32 O TYR A 33 ? O TYR A 52 A 2 3 N ASN A 34 ? N ASN A 53 O SER A 41 ? O SER A 60 A 3 4 N CYS A 44 ? N CYS A 63 O THR A 52 ? O THR A 71 A 4 5 N ASN A 57 ? N ASN A 76 O ILE A 68 ? O ILE A 87 A 5 6 N ILE A 65 ? N ILE A 84 O PHE A 92 ? O PHE A 111 A 6 7 N LYS A 93 ? N LYS A 112 O GLU A 105 ? O GLU A 124 A 7 8 N LEU A 102 ? N LEU A 121 O PHE A 113 ? O PHE A 132 A 8 9 O ARG A 114 ? O ARG A 133 N GLN A 14 ? N GLN A 33 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 201 ? 4 'BINDING SITE FOR RESIDUE EDO A 201' AC2 Software A EDO 202 ? 5 'BINDING SITE FOR RESIDUE EDO A 202' AC3 Software A EDO 203 ? 4 'BINDING SITE FOR RESIDUE EDO A 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLY A 62 ? GLY A 81 . ? 1_555 ? 2 AC1 4 VAL A 94 ? VAL A 113 . ? 1_555 ? 3 AC1 4 HOH E . ? HOH A 358 . ? 1_555 ? 4 AC1 4 HOH E . ? HOH A 397 . ? 5_665 ? 5 AC2 5 LYS A 37 ? LYS A 56 . ? 5_675 ? 6 AC2 5 LYS A 37 ? LYS A 56 . ? 1_555 ? 7 AC2 5 GLY A 38 ? GLY A 57 . ? 5_675 ? 8 AC2 5 GLY A 38 ? GLY A 57 . ? 1_555 ? 9 AC2 5 TYR A 58 ? TYR A 77 . ? 1_555 ? 10 AC3 4 ASP A 80 ? ASP A 99 . ? 5_665 ? 11 AC3 4 SER A 100 ? SER A 119 . ? 1_555 ? 12 AC3 4 HOH E . ? HOH A 338 . ? 1_555 ? 13 AC3 4 HOH E . ? HOH A 407 . ? 5_665 ? # _atom_sites.entry_id 4QRL _atom_sites.fract_transf_matrix[1][1] 0.020470 _atom_sites.fract_transf_matrix[1][2] 0.011819 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023637 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012747 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 CYS 2 21 ? ? ? A . n A 1 3 MSE 3 22 ? ? ? A . n A 1 4 ASN 4 23 ? ? ? A . n A 1 5 GLY 5 24 ? ? ? A . n A 1 6 GLY 6 25 ? ? ? A . n A 1 7 GLY 7 26 26 GLY GLY A . n A 1 8 ASP 8 27 27 ASP ASP A . n A 1 9 LEU 9 28 28 LEU LEU A . n A 1 10 ALA 10 29 29 ALA ALA A . n A 1 11 GLY 11 30 30 GLY GLY A . n A 1 12 LYS 12 31 31 LYS LYS A . n A 1 13 TRP 13 32 32 TRP TRP A . n A 1 14 GLN 14 33 33 GLN GLN A . n A 1 15 LEU 15 34 34 LEU LEU A . n A 1 16 ARG 16 35 35 ARG ARG A . n A 1 17 GLN 17 36 36 GLN GLN A . n A 1 18 TYR 18 37 37 TYR TYR A . n A 1 19 GLN 19 38 38 GLN GLN A . n A 1 20 TYR 20 39 39 TYR TYR A . n A 1 21 ALA 21 40 40 ALA ALA A . n A 1 22 ASP 22 41 41 ASP ASP A . n A 1 23 GLY 23 42 42 GLY GLY A . n A 1 24 THR 24 43 43 THR THR A . n A 1 25 SER 25 44 44 SER SER A . n A 1 26 GLU 26 45 45 GLU GLU A . n A 1 27 LYS 27 46 46 LYS LYS A . n A 1 28 VAL 28 47 47 VAL VAL A . n A 1 29 ASP 29 48 48 ASP ASP A . n A 1 30 SER 30 49 49 SER SER A . n A 1 31 VAL 31 50 50 VAL VAL A . n A 1 32 PHE 32 51 51 PHE PHE A . n A 1 33 TYR 33 52 52 TYR TYR A . n A 1 34 ASN 34 53 53 ASN ASN A . n A 1 35 PHE 35 54 54 PHE PHE A . n A 1 36 GLN 36 55 55 GLN GLN A . n A 1 37 LYS 37 56 56 LYS LYS A . n A 1 38 GLY 38 57 57 GLY GLY A . n A 1 39 SER 39 58 58 SER SER A . n A 1 40 PHE 40 59 59 PHE PHE A . n A 1 41 SER 41 60 60 SER SER A . n A 1 42 ALA 42 61 61 ALA ALA A . n A 1 43 ILE 43 62 62 ILE ILE A . n A 1 44 CYS 44 63 63 CYS CYS A . n A 1 45 LEU 45 64 64 LEU LEU A . n A 1 46 LEU 46 65 65 LEU LEU A . n A 1 47 LYS 47 66 66 LYS LYS A . n A 1 48 ASP 48 67 67 ASP ASP A . n A 1 49 GLY 49 68 68 GLY GLY A . n A 1 50 GLY 50 69 69 GLY GLY A . n A 1 51 LEU 51 70 70 LEU LEU A . n A 1 52 THR 52 71 71 THR THR A . n A 1 53 THR 53 72 72 THR THR A . n A 1 54 PHE 54 73 73 PHE PHE A . n A 1 55 PHE 55 74 74 PHE PHE A . n A 1 56 GLY 56 75 75 GLY GLY A . n A 1 57 ASN 57 76 76 ASN ASN A . n A 1 58 TYR 58 77 77 TYR TYR A . n A 1 59 SER 59 78 78 SER SER A . n A 1 60 LEU 60 79 79 LEU LEU A . n A 1 61 LYS 61 80 80 LYS LYS A . n A 1 62 GLY 62 81 81 GLY GLY A . n A 1 63 ALA 63 82 82 ALA ALA A . n A 1 64 GLU 64 83 83 GLU GLU A . n A 1 65 ILE 65 84 84 ILE ILE A . n A 1 66 SER 66 85 85 SER SER A . n A 1 67 ILE 67 86 86 ILE ILE A . n A 1 68 ILE 68 87 87 ILE ILE A . n A 1 69 LEU 69 88 88 LEU LEU A . n A 1 70 LEU 70 89 89 LEU LEU A . n A 1 71 PRO 71 90 90 PRO PRO A . n A 1 72 GLU 72 91 91 GLU GLU A . n A 1 73 SER 73 92 92 SER SER A . n A 1 74 VAL 74 93 93 VAL VAL A . n A 1 75 ASN 75 94 94 ASN ASN A . n A 1 76 ASP 76 95 95 ASP ASP A . n A 1 77 LYS 77 96 96 LYS LYS A . n A 1 78 ASN 78 97 97 ASN ASN A . n A 1 79 TYR 79 98 98 TYR TYR A . n A 1 80 ASP 80 99 99 ASP ASP A . n A 1 81 THR 81 100 100 THR THR A . n A 1 82 TYR 82 101 101 TYR TYR A . n A 1 83 PHE 83 102 102 PHE PHE A . n A 1 84 GLY 84 103 103 GLY GLY A . n A 1 85 TRP 85 104 104 TRP TRP A . n A 1 86 PRO 86 105 105 PRO PRO A . n A 1 87 GLU 87 106 106 GLU GLU A . n A 1 88 GLY 88 107 107 GLY GLY A . n A 1 89 LYS 89 108 108 LYS LYS A . n A 1 90 CYS 90 109 109 CYS CYS A . n A 1 91 THR 91 110 110 THR THR A . n A 1 92 PHE 92 111 111 PHE PHE A . n A 1 93 LYS 93 112 112 LYS LYS A . n A 1 94 VAL 94 113 113 VAL VAL A . n A 1 95 GLU 95 114 114 GLU GLU A . n A 1 96 ASP 96 115 115 ASP ASP A . n A 1 97 LEU 97 116 116 LEU LEU A . n A 1 98 SER 98 117 117 SER SER A . n A 1 99 TYR 99 118 118 TYR TYR A . n A 1 100 SER 100 119 119 SER SER A . n A 1 101 SER 101 120 120 SER SER A . n A 1 102 LEU 102 121 121 LEU LEU A . n A 1 103 ARG 103 122 122 ARG ARG A . n A 1 104 LEU 104 123 123 LEU LEU A . n A 1 105 GLU 105 124 124 GLU GLU A . n A 1 106 TYR 106 125 125 TYR TYR A . n A 1 107 GLU 107 126 126 GLU GLU A . n A 1 108 GLY 108 127 127 GLY GLY A . n A 1 109 THR 109 128 128 THR THR A . n A 1 110 LYS 110 129 129 LYS LYS A . n A 1 111 SER 111 130 130 SER SER A . n A 1 112 ILE 112 131 131 ILE ILE A . n A 1 113 PHE 113 132 132 PHE PHE A . n A 1 114 ARG 114 133 133 ARG ARG A . n A 1 115 LYS 115 134 134 LYS LYS A . n A 1 116 PHE 116 135 135 PHE PHE A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG _pdbx_SG_project.id 1 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 201 141 EDO EDO A . C 2 EDO 1 202 142 EDO EDO A . D 2 EDO 1 203 143 EDO EDO A . E 3 HOH 1 301 144 HOH HOH A . E 3 HOH 2 302 145 HOH HOH A . E 3 HOH 3 303 146 HOH HOH A . E 3 HOH 4 304 147 HOH HOH A . E 3 HOH 5 305 148 HOH HOH A . E 3 HOH 6 306 149 HOH HOH A . E 3 HOH 7 307 150 HOH HOH A . E 3 HOH 8 308 151 HOH HOH A . E 3 HOH 9 309 152 HOH HOH A . E 3 HOH 10 310 153 HOH HOH A . E 3 HOH 11 311 154 HOH HOH A . E 3 HOH 12 312 155 HOH HOH A . E 3 HOH 13 313 156 HOH HOH A . E 3 HOH 14 314 157 HOH HOH A . E 3 HOH 15 315 158 HOH HOH A . E 3 HOH 16 316 159 HOH HOH A . E 3 HOH 17 317 160 HOH HOH A . E 3 HOH 18 318 161 HOH HOH A . E 3 HOH 19 319 162 HOH HOH A . E 3 HOH 20 320 163 HOH HOH A . E 3 HOH 21 321 164 HOH HOH A . E 3 HOH 22 322 165 HOH HOH A . E 3 HOH 23 323 166 HOH HOH A . E 3 HOH 24 324 167 HOH HOH A . E 3 HOH 25 325 168 HOH HOH A . E 3 HOH 26 326 169 HOH HOH A . E 3 HOH 27 327 170 HOH HOH A . E 3 HOH 28 328 171 HOH HOH A . E 3 HOH 29 329 172 HOH HOH A . E 3 HOH 30 330 173 HOH HOH A . E 3 HOH 31 331 174 HOH HOH A . E 3 HOH 32 332 175 HOH HOH A . E 3 HOH 33 333 176 HOH HOH A . E 3 HOH 34 334 177 HOH HOH A . E 3 HOH 35 335 178 HOH HOH A . E 3 HOH 36 336 179 HOH HOH A . E 3 HOH 37 337 180 HOH HOH A . E 3 HOH 38 338 181 HOH HOH A . E 3 HOH 39 339 182 HOH HOH A . E 3 HOH 40 340 183 HOH HOH A . E 3 HOH 41 341 184 HOH HOH A . E 3 HOH 42 342 185 HOH HOH A . E 3 HOH 43 343 186 HOH HOH A . E 3 HOH 44 344 187 HOH HOH A . E 3 HOH 45 345 188 HOH HOH A . E 3 HOH 46 346 189 HOH HOH A . E 3 HOH 47 347 190 HOH HOH A . E 3 HOH 48 348 191 HOH HOH A . E 3 HOH 49 349 192 HOH HOH A . E 3 HOH 50 350 193 HOH HOH A . E 3 HOH 51 351 194 HOH HOH A . E 3 HOH 52 352 195 HOH HOH A . E 3 HOH 53 353 196 HOH HOH A . E 3 HOH 54 354 197 HOH HOH A . E 3 HOH 55 355 198 HOH HOH A . E 3 HOH 56 356 199 HOH HOH A . E 3 HOH 57 357 200 HOH HOH A . E 3 HOH 58 358 201 HOH HOH A . E 3 HOH 59 359 202 HOH HOH A . E 3 HOH 60 360 203 HOH HOH A . E 3 HOH 61 361 204 HOH HOH A . E 3 HOH 62 362 205 HOH HOH A . E 3 HOH 63 363 206 HOH HOH A . E 3 HOH 64 364 207 HOH HOH A . E 3 HOH 65 365 208 HOH HOH A . E 3 HOH 66 366 209 HOH HOH A . E 3 HOH 67 367 210 HOH HOH A . E 3 HOH 68 368 211 HOH HOH A . E 3 HOH 69 369 212 HOH HOH A . E 3 HOH 70 370 213 HOH HOH A . E 3 HOH 71 371 214 HOH HOH A . E 3 HOH 72 372 215 HOH HOH A . E 3 HOH 73 373 216 HOH HOH A . E 3 HOH 74 374 217 HOH HOH A . E 3 HOH 75 375 218 HOH HOH A . E 3 HOH 76 376 219 HOH HOH A . E 3 HOH 77 377 220 HOH HOH A . E 3 HOH 78 378 221 HOH HOH A . E 3 HOH 79 379 222 HOH HOH A . E 3 HOH 80 380 223 HOH HOH A . E 3 HOH 81 381 224 HOH HOH A . E 3 HOH 82 382 225 HOH HOH A . E 3 HOH 83 383 226 HOH HOH A . E 3 HOH 84 384 227 HOH HOH A . E 3 HOH 85 385 228 HOH HOH A . E 3 HOH 86 386 229 HOH HOH A . E 3 HOH 87 387 230 HOH HOH A . E 3 HOH 88 388 231 HOH HOH A . E 3 HOH 89 389 232 HOH HOH A . E 3 HOH 90 390 233 HOH HOH A . E 3 HOH 91 391 234 HOH HOH A . E 3 HOH 92 392 235 HOH HOH A . E 3 HOH 93 393 236 HOH HOH A . E 3 HOH 94 394 237 HOH HOH A . E 3 HOH 95 395 238 HOH HOH A . E 3 HOH 96 396 239 HOH HOH A . E 3 HOH 97 397 240 HOH HOH A . E 3 HOH 98 398 241 HOH HOH A . E 3 HOH 99 399 242 HOH HOH A . E 3 HOH 100 400 243 HOH HOH A . E 3 HOH 101 401 244 HOH HOH A . E 3 HOH 102 402 245 HOH HOH A . E 3 HOH 103 403 246 HOH HOH A . E 3 HOH 104 404 247 HOH HOH A . E 3 HOH 105 405 248 HOH HOH A . E 3 HOH 106 406 249 HOH HOH A . E 3 HOH 107 407 250 HOH HOH A . E 3 HOH 108 408 251 HOH HOH A . E 3 HOH 109 409 252 HOH HOH A . E 3 HOH 110 410 253 HOH HOH A . E 3 HOH 111 411 254 HOH HOH A . E 3 HOH 112 412 255 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 301 ? E HOH . 2 1 A HOH 308 ? E HOH . 3 1 A HOH 350 ? E HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-08-27 2 'Structure model' 1 1 2014-12-24 3 'Structure model' 1 2 2017-11-22 4 'Structure model' 1 3 2018-01-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' citation_author 3 5 'Structure model' database_2 4 5 'Structure model' struct_ref_seq_dif 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_citation_author.name' 4 5 'Structure model' '_database_2.pdbx_DOI' 5 5 'Structure model' '_database_2.pdbx_database_accession' 6 5 'Structure model' '_struct_ref_seq_dif.details' 7 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 9.5385 _pdbx_refine_tls.origin_y 27.6457 _pdbx_refine_tls.origin_z 12.1177 _pdbx_refine_tls.T[1][1] -0.0563 _pdbx_refine_tls.T[2][2] -0.0561 _pdbx_refine_tls.T[3][3] -0.0058 _pdbx_refine_tls.T[1][2] -0.0036 _pdbx_refine_tls.T[1][3] 0.0256 _pdbx_refine_tls.T[2][3] 0.0013 _pdbx_refine_tls.L[1][1] 1.8105 _pdbx_refine_tls.L[2][2] 1.8675 _pdbx_refine_tls.L[3][3] 1.0840 _pdbx_refine_tls.L[1][2] 0.2281 _pdbx_refine_tls.L[1][3] -0.0593 _pdbx_refine_tls.L[2][3] -0.4246 _pdbx_refine_tls.S[1][1] 0.0150 _pdbx_refine_tls.S[2][2] -0.0087 _pdbx_refine_tls.S[3][3] -0.0063 _pdbx_refine_tls.S[1][2] -0.1303 _pdbx_refine_tls.S[1][3] 0.0333 _pdbx_refine_tls.S[2][3] 0.0265 _pdbx_refine_tls.S[2][1] 0.0115 _pdbx_refine_tls.S[3][1] -0.0227 _pdbx_refine_tls.S[3][2] -0.0767 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 26 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 135 _pdbx_refine_tls_group.selection_details '{A|26 - 135}' _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 PHASER 2.3.0 ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 BUSTER-TNT 2.10.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 BUSTER 2.10.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.compound_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (21-135) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.entry_id 4QRL _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id PHE _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 102 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -132.66 _pdbx_validate_torsion.psi -80.44 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A CYS 21 ? A CYS 2 3 1 Y 1 A MSE 22 ? A MSE 3 4 1 Y 1 A ASN 23 ? A ASN 4 5 1 Y 1 A GLY 24 ? A GLY 5 6 1 Y 1 A GLY 25 ? A GLY 6 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH #