HEADER HYDROLASE 03-JUL-14 4QSF TITLE CRYSTAL STRUCTURE OF AMIDOHYDROLASE PMI1525 (TARGET EFI-500319) FROM TITLE 2 PROTEUS MIRABILIS HI4320, A COMPLEX WITH BUTYRIC ACID AND MANGANESE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMIDOHYDROLASE PMI1525; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROTEUS MIRABILIS; SOURCE 3 ORGANISM_TAXID: 529507; SOURCE 4 STRAIN: HI4320; SOURCE 5 GENE: PMI1525; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS HYDROLASE, AMIDOHYDROLASE, METAL BINDING SITE, ENZYME FUNCTION KEYWDS 2 INITIATIVE, EFI, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,D.F.XIANG,F.M.RAUSHEL,J.A.GERLT,S.C.ALMO,ENZYME AUTHOR 2 FUNCTION INITIATIVE (EFI) REVDAT 3 20-SEP-23 4QSF 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK REVDAT 2 24-JAN-18 4QSF 1 AUTHOR REVDAT 1 30-JUL-14 4QSF 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,D.F.XIANG,F.M.RAUSHEL,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF AMIDOHYDROLASE PMI1525 FROM PROTEUS JRNL TITL 2 MIRABILIS HI4320 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 45276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1450 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3330 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2740 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 385 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.48000 REMARK 3 B22 (A**2) : -0.48000 REMARK 3 B33 (A**2) : 1.55000 REMARK 3 B12 (A**2) : -0.48000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.572 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2896 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2775 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3916 ; 1.567 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6427 ; 0.848 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 375 ; 5.769 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;37.160 ;25.496 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 520 ;13.469 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;12.269 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 433 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3291 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 626 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4QSF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086454. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46783 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 34.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : 0.66000 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3RHG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, PH 5.5, 200MM LITHIUM REMARK 280 SULFATE, 25% PEG3350; CRYOPROTECTION: 50MM 4-NITRO- REMARK 280 PHENOLBUTYRATE PLUS RESERVOIR SOLUTION; VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.66200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.83100 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 21.83100 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.66200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 686 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 797 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 356 REMARK 465 HIS A 357 REMARK 465 HIS A 358 REMARK 465 TRP A 359 REMARK 465 SER A 360 REMARK 465 HIS A 361 REMARK 465 PRO A 362 REMARK 465 GLN A 363 REMARK 465 PHE A 364 REMARK 465 GLU A 365 REMARK 465 LYS A 366 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 182 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 33 31.53 -142.45 REMARK 500 ASP A 61 68.35 -151.30 REMARK 500 PHE A 173 73.84 23.94 REMARK 500 LYS A 263 -77.34 -91.46 REMARK 500 ASN A 314 -63.22 -96.54 REMARK 500 ILE A 335 -81.33 -124.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 23 NE2 REMARK 620 2 HIS A 25 NE2 123.4 REMARK 620 3 GLU A 166 OE2 92.4 86.0 REMARK 620 4 ASP A 294 OD1 91.2 87.9 173.9 REMARK 620 5 BUA A 403 O1 116.2 119.9 84.0 98.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 166 OE1 REMARK 620 2 HIS A 199 ND1 103.9 REMARK 620 3 HIS A 229 NE2 115.9 97.4 REMARK 620 4 BUA A 403 O2 112.8 91.8 126.3 REMARK 620 5 BUA A 403 O1 95.1 148.2 96.8 57.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BUA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RHG RELATED DB: PDB REMARK 900 RELATED ID: 4QRN RELATED DB: PDB REMARK 900 RELATED ID: 4QRO RELATED DB: PDB REMARK 900 RELATED ID: 4QS5 RELATED DB: PDB REMARK 900 RELATED ID: 4QS6 RELATED DB: PDB REMARK 900 RELATED ID: EFI-500319 RELATED DB: TARGETTRACK DBREF 4QSF A 1 343 UNP B4EXV8 B4EXV8_PROMH 1 343 SEQADV 4QSF ALA A 344 UNP B4EXV8 EXPRESSION TAG SEQADV 4QSF GLU A 345 UNP B4EXV8 EXPRESSION TAG SEQADV 4QSF ASN A 346 UNP B4EXV8 EXPRESSION TAG SEQADV 4QSF LEU A 347 UNP B4EXV8 EXPRESSION TAG SEQADV 4QSF TYR A 348 UNP B4EXV8 EXPRESSION TAG SEQADV 4QSF PHE A 349 UNP B4EXV8 EXPRESSION TAG SEQADV 4QSF GLN A 350 UNP B4EXV8 EXPRESSION TAG SEQADV 4QSF SER A 351 UNP B4EXV8 EXPRESSION TAG SEQADV 4QSF HIS A 353 UNP B4EXV8 EXPRESSION TAG SEQADV 4QSF HIS A 354 UNP B4EXV8 EXPRESSION TAG SEQADV 4QSF HIS A 355 UNP B4EXV8 EXPRESSION TAG SEQADV 4QSF HIS A 356 UNP B4EXV8 EXPRESSION TAG SEQADV 4QSF HIS A 357 UNP B4EXV8 EXPRESSION TAG SEQADV 4QSF HIS A 358 UNP B4EXV8 EXPRESSION TAG SEQADV 4QSF TRP A 359 UNP B4EXV8 EXPRESSION TAG SEQADV 4QSF SER A 360 UNP B4EXV8 EXPRESSION TAG SEQADV 4QSF HIS A 361 UNP B4EXV8 EXPRESSION TAG SEQADV 4QSF PRO A 362 UNP B4EXV8 EXPRESSION TAG SEQADV 4QSF GLN A 363 UNP B4EXV8 EXPRESSION TAG SEQADV 4QSF PHE A 364 UNP B4EXV8 EXPRESSION TAG SEQADV 4QSF GLU A 365 UNP B4EXV8 EXPRESSION TAG SEQADV 4QSF LYS A 366 UNP B4EXV8 EXPRESSION TAG SEQRES 1 A 365 MET LYS GLY TYR ILE GLN THR VAL THR GLY PRO VAL LYS SEQRES 2 A 365 LYS ALA ASP MET GLY LEU THR LEU PRO HIS GLU HIS LEU SEQRES 3 A 365 PHE ASN ASP LEU SER GLY VAL VAL ASP GLU PRO PHE TYR SEQRES 4 A 365 GLU PHE SER HIS VAL LEU VAL ASP LYS LYS VAL SER ALA SEQRES 5 A 365 ASP ILE GLN TRP GLY LEU LYS TYR ASP PRO TYR CYS CYS SEQRES 6 A 365 CYS ASP ASN MET ASP LYS LYS PRO ILE GLU ASP VAL ILE SEQRES 7 A 365 PHE GLU LEU ASN ASN PHE LYS GLU LEU GLY GLY LYS THR SEQRES 8 A 365 ILE VAL ASP ALA THR GLY SER SER SER ILE GLY ARG ASP SEQRES 9 A 365 ILE ARG LYS LEU LYS GLN VAL ALA GLU LEU THR GLY ILE SEQRES 10 A 365 ASN VAL VAL ALA SER SER GLY LEU TYR ILE GLU LYS PHE SEQRES 11 A 365 GLU GLY LYS ARG LEU ALA ASP ASP ILE ASP ALA MET ALA SEQRES 12 A 365 LYS MET ILE ASP ASP GLU LEU ASN ILE GLY ILE ASP GLY SEQRES 13 A 365 THR ASP ILE ARG ALA GLY MET ILE GLY GLU ILE GLY VAL SEQRES 14 A 365 SER PRO PHE PHE THR ASP GLY GLU LYS ASN SER LEU ARG SEQRES 15 A 365 ALA ALA ALA LEU ALA GLN ASN ASN ASN PRO TYR ALA SER SEQRES 16 A 365 MET ASN ILE HIS MET PRO GLY TRP GLN ARG ARG GLY ASP SEQRES 17 A 365 GLU VAL LEU ASP ILE LEU LEU THR GLU MET GLY CYS ASP SEQRES 18 A 365 PRO ALA LYS ILE SER LEU ALA HIS SER ASP PRO SER GLY SEQRES 19 A 365 LYS ASP ILE ASP TYR GLN CYS LYS MET LEU ASP ARG GLY SEQRES 20 A 365 VAL TRP LEU GLU PHE ASP MET ILE GLY LEU ASP ILE SER SEQRES 21 A 365 PHE PRO LYS GLU GLY ALA ALA PRO SER VAL MET ASP THR SEQRES 22 A 365 VAL GLU ALA VAL ALA THR LEU ILE GLU ARG GLY TYR GLY SEQRES 23 A 365 ASN GLN ILE VAL LEU SER HIS ASP VAL PHE LEU LYS GLN SEQRES 24 A 365 MET TRP ALA LYS ASN GLY GLY ASN GLY TRP GLY PHE VAL SEQRES 25 A 365 PRO ASN VAL PHE LEU SER LEU LEU ALA GLN ARG GLY ILE SEQRES 26 A 365 ASP LYS THR ILE ILE ASP LYS LEU CYS ILE ASP ASN PRO SEQRES 27 A 365 ALA ASN LEU LEU ALA ALA GLU ASN LEU TYR PHE GLN SER SEQRES 28 A 365 HIS HIS HIS HIS HIS HIS TRP SER HIS PRO GLN PHE GLU SEQRES 29 A 365 LYS HET MN A 401 1 HET MN A 402 1 HET BUA A 403 6 HET SO4 A 404 5 HET SO4 A 405 5 HETNAM MN MANGANESE (II) ION HETNAM BUA BUTANOIC ACID HETNAM SO4 SULFATE ION FORMUL 2 MN 2(MN 2+) FORMUL 4 BUA C4 H8 O2 FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *385(H2 O) HELIX 1 1 ALA A 15 MET A 17 5 3 HELIX 2 2 LEU A 30 VAL A 34 5 5 HELIX 3 3 PHE A 41 VAL A 46 5 6 HELIX 4 4 SER A 51 ASP A 53 5 3 HELIX 5 5 ILE A 54 LYS A 59 1 6 HELIX 6 6 ASP A 61 CYS A 64 5 4 HELIX 7 7 CYS A 65 ASP A 70 1 6 HELIX 8 8 PRO A 73 LEU A 87 1 15 HELIX 9 9 SER A 98 GLY A 102 5 5 HELIX 10 10 ASP A 104 GLY A 116 1 13 HELIX 11 11 ILE A 127 GLY A 132 1 6 HELIX 12 12 LYS A 133 ASP A 137 5 5 HELIX 13 13 ASP A 138 ILE A 152 1 15 HELIX 14 14 THR A 174 ASN A 189 1 16 HELIX 15 15 ARG A 206 LEU A 215 1 10 HELIX 16 16 ASP A 221 ALA A 223 5 3 HELIX 17 17 SER A 230 GLY A 234 5 5 HELIX 18 18 ASP A 236 ARG A 246 1 11 HELIX 19 19 SER A 269 ARG A 283 1 15 HELIX 20 20 TYR A 285 ASN A 287 5 3 HELIX 21 21 LEU A 297 GLY A 305 5 9 HELIX 22 22 GLY A 310 ARG A 323 1 14 HELIX 23 23 ASP A 326 CYS A 334 1 9 HELIX 24 24 ILE A 335 ALA A 344 1 10 SHEET 1 A 2 TYR A 4 THR A 7 0 SHEET 2 A 2 GLY A 10 LYS A 13 -1 O VAL A 12 N ILE A 5 SHEET 1 B 3 LEU A 19 GLU A 24 0 SHEET 2 B 3 GLY A 89 ASP A 94 1 O LYS A 90 N LEU A 19 SHEET 3 B 3 ASN A 118 VAL A 120 1 O VAL A 120 N ASP A 94 SHEET 1 C 6 SER A 122 SER A 123 0 SHEET 2 C 6 MET A 163 GLY A 168 1 O MET A 163 N SER A 123 SHEET 3 C 6 SER A 195 HIS A 199 1 O ASN A 197 N ILE A 164 SHEET 4 C 6 ILE A 225 LEU A 227 1 O SER A 226 N MET A 196 SHEET 5 C 6 TRP A 249 PHE A 252 1 O TRP A 249 N LEU A 227 SHEET 6 C 6 ILE A 289 LEU A 291 1 O VAL A 290 N PHE A 252 SHEET 1 D 2 SER A 260 PHE A 261 0 SHEET 2 D 2 GLY A 265 ALA A 266 -1 O GLY A 265 N PHE A 261 LINK NE2 HIS A 23 MN MN A 401 1555 1555 2.15 LINK NE2 HIS A 25 MN MN A 401 1555 1555 2.15 LINK OE2 GLU A 166 MN MN A 401 1555 1555 2.17 LINK OE1 GLU A 166 MN MN A 402 1555 1555 2.10 LINK ND1 HIS A 199 MN MN A 402 1555 1555 2.09 LINK NE2 HIS A 229 MN MN A 402 1555 1555 2.16 LINK OD1 ASP A 294 MN MN A 401 1555 1555 2.21 LINK MN MN A 401 O1 BUA A 403 1555 1555 2.11 LINK MN MN A 402 O2 BUA A 403 1555 1555 2.15 LINK MN MN A 402 O1 BUA A 403 1555 1555 2.20 CISPEP 1 GLY A 165 GLU A 166 0 -10.09 SITE 1 AC1 5 HIS A 23 HIS A 25 GLU A 166 ASP A 294 SITE 2 AC1 5 BUA A 403 SITE 1 AC2 4 GLU A 166 HIS A 199 HIS A 229 BUA A 403 SITE 1 AC3 10 HIS A 23 HIS A 25 ASN A 28 TYR A 126 SITE 2 AC3 10 GLU A 166 HIS A 199 HIS A 229 ASP A 294 SITE 3 AC3 10 MN A 401 MN A 402 SITE 1 AC4 4 ARG A 323 HIS A 354 HIS A 355 HOH A 682 SITE 1 AC5 10 MET A 1 LYS A 2 GLY A 3 LYS A 14 SITE 2 AC5 10 ALA A 344 GLU A 345 HOH A 536 HOH A 617 SITE 3 AC5 10 HOH A 661 HOH A 870 CRYST1 101.269 101.269 65.493 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009875 0.005701 0.000000 0.00000 SCALE2 0.000000 0.011402 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015269 0.00000